Guide to the Human Genome
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Name: GRPEL1 Sequence: fasta or formatted (217aa) NCBI GI: 24308295
Description:

GrpE-like 1, mitochondrial

Referenced in:

Heat-Shock Proteins and Chaperonins
Mitochondria

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         19           2
 C cysteine            1.8          4           1
 D aspartate           3.7          8           2
 E glutamate          11.1         24           2
 F phenylalanine       1.8          4           1
 G glycine             5.1         11           1
 H histidine           2.3          5           1
 I isoleucine          1.4          3           1
 K lysine             11.1         24           1
 L leucine            13.8         30           2
 M methionine          1.4          3           1
 N asparagine          2.8          6           1
 P proline             5.5         12           2
 Q glutamine           5.5         12           1
 R arginine            4.6         10           2
 S serine              3.2          7           1
 T threonine           5.5         12           1
 V valine              8.3         18           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GrpE-like 1, mitochondrial 
GRPEL2                0.381   GrpE-like 2, mitochondrial 
UBC                   0.030   ubiquitin C 
CCDC147               0.030   coiled-coil domain containing 147 
UBB                   0.030   ubiquitin B precursor 
CCDC41                0.030   NY-REN-58 antigen 
CCDC41                0.030   NY-REN-58 antigen 
SMC3                  0.027   structural maintenance of chromosomes 3 
CENPE                 0.027   centromere protein E 
MYH13                 0.027   myosin, heavy polypeptide 13, skeletal muscle [Homo...
LOC645202             0.025   PREDICTED: hypothetical protein LOC645202 
MYH11                 0.025   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.025   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.025   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.025   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
C6orf204              0.025   chromosome 6 open reading frame 204 isoform a [Homo...
RASAL2                0.022   RAS protein activator like 2 isoform 2 
RASAL2                0.022   RAS protein activator like 2 isoform 1 
MYH3                  0.022   myosin, heavy chain 3, skeletal muscle, embryonic [H...
DST                   0.022   dystonin isoform 4 
DST                   0.022   dystonin isoform 3 
DST                   0.022   dystonin isoform 2 
DST                   0.022   dystonin isoform 1 
DST                   0.022   dystonin isoform 1eA precursor 
HOOK1                 0.022   hook homolog 1 
C2orf86               0.022   hypothetical protein LOC51057 isoform 2 
SMC1A                 0.022   structural maintenance of chromosomes 1A 
DDX23                 0.022   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
PLEKHH1               0.022   pleckstrin homology domain containing, family H (wit...
MYH9                  0.020   myosin, heavy polypeptide 9, non-muscle 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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