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Search of human proteins with 210032390
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|210032390 SEC13 protein isoform 2 [Homo sapiens]
(308 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|210032390 SEC13 protein isoform 2 [Homo sapiens] 659 0.0
gi|34335134 SEC13 protein isoform 1 [Homo sapiens] 659 0.0
gi|61743971 sec13-like protein isoform 1 [Homo sapiens] 151 8e-37
gi|61743969 sec13-like protein isoform 2 [Homo sapiens] 151 8e-37
gi|4757988 WD repeat domain 39 [Homo sapiens] 103 1e-22
gi|4557741 platelet-activating factor acetylhydrolase, isoform I... 68 1e-11
gi|115298668 WD repeat domain 57 (U5 snRNP specific) [Homo sapiens] 64 1e-10
gi|32483361 apoptotic peptidase activating factor 1 isoform d [H... 64 2e-10
gi|4502123 apoptotic peptidase activating factor 1 isoform b [Ho... 64 2e-10
gi|19913367 transducin beta-like 1Y [Homo sapiens] 63 4e-10
gi|19913365 transducin beta-like 1Y [Homo sapiens] 63 4e-10
gi|15150805 transducin beta-like 1Y [Homo sapiens] 63 4e-10
gi|32483359 apoptotic peptidase activating factor 1 isoform c [H... 60 2e-09
gi|7108333 apoptotic peptidase activating factor 1 isoform a [Ho... 60 2e-09
gi|7657439 PCAF associated factor 65 beta isoform a [Homo sapiens] 59 4e-09
gi|19913369 transducin beta-like 3 [Homo sapiens] 58 9e-09
gi|4506439 retinoblastoma binding protein 7 [Homo sapiens] 58 1e-08
gi|23199987 WD repeat domain 5B [Homo sapiens] 55 8e-08
gi|14150171 THO complex 3 [Homo sapiens] 54 2e-07
gi|237820620 glutamate-rich WD repeat containing 1 [Homo sapiens] 53 4e-07
gi|223029510 echinoderm microtubule associated protein like 4 is... 53 4e-07
gi|19923497 echinoderm microtubule associated protein like 4 iso... 53 4e-07
gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo s... 53 4e-07
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 53 4e-07
gi|89026256 PREDICTED: similar to actin related protein 2/3 comp... 52 5e-07
gi|5031601 actin related protein 2/3 complex subunit 1B [Homo sa... 52 5e-07
gi|213021190 transducin beta-like 1X isoform b [Homo sapiens] 52 7e-07
gi|213021188 transducin beta-like 1X isoform b [Homo sapiens] 52 7e-07
gi|213021186 transducin beta-like 1X isoform a [Homo sapiens] 52 7e-07
gi|5032159 transducin beta-like 1X isoform a [Homo sapiens] 52 7e-07
>gi|210032390 SEC13 protein isoform 2 [Homo sapiens]
Length = 308
Score = 659 bits (1699), Expect = 0.0
Identities = 308/308 (100%), Positives = 308/308 (100%)
Query: 1 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL 60
MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL
Sbjct: 1 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL 60
Query: 61 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 120
ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY
Sbjct: 61 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 120
Query: 121 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW 180
TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW
Sbjct: 121 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW 180
Query: 181 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS 240
KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS
Sbjct: 181 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS 240
Query: 241 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV 300
PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV
Sbjct: 241 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV 300
Query: 301 TEGQQNEQ 308
TEGQQNEQ
Sbjct: 301 TEGQQNEQ 308
>gi|34335134 SEC13 protein isoform 1 [Homo sapiens]
Length = 322
Score = 659 bits (1699), Expect = 0.0
Identities = 308/308 (100%), Positives = 308/308 (100%)
Query: 1 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL 60
MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL
Sbjct: 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL 74
Query: 61 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 120
ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY
Sbjct: 75 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 134
Query: 121 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW 180
TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW
Sbjct: 135 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW 194
Query: 181 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS 240
KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS
Sbjct: 195 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS 254
Query: 241 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV 300
PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV
Sbjct: 255 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV 314
Query: 301 TEGQQNEQ 308
TEGQQNEQ
Sbjct: 315 TEGQQNEQ 322
>gi|61743971 sec13-like protein isoform 1 [Homo sapiens]
Length = 421
Score = 151 bits (381), Expect = 8e-37
Identities = 103/338 (30%), Positives = 156/338 (46%), Gaps = 47/338 (13%)
Query: 1 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNI 59
+IHD D++G R+ATCSSD+SVK++D G A + H G VW+V WAHP +G +
Sbjct: 14 LIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQV 73
Query: 60 LASCSYDRKVIIWREENGT----------WEKSHEHAGHDSSVNSVCWAPHDYGLILACG 109
LASCS+DR +W E G W K +SV V +AP GL+LA
Sbjct: 74 LASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
Query: 110 SSDGAISLL---TYTGEGQWEVKKINNAHTIGCNAVSW--------APAVVPGSLIDHPS 158
S+DG + + QW ++ + + C+ +SW +P + GS P+
Sbjct: 134 SADGIVRIYEAPDVMNLSQWSLQH-EISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPN 192
Query: 159 GQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 218
I + E ++ + + L +D V D+A+AP++G +A
Sbjct: 193 AMAKVQIFEY-------------NENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILA 239
Query: 219 SCSQDGRVFIW------TCDDASSNTWSPKLLHKF---NDVVWHVSWSITANILAVSGGD 269
++D R+F + ++ +F N VW VSW+IT +LA SG D
Sbjct: 240 IATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDD 299
Query: 270 NKVTLWKESVDGQWVCISDVNKGQGS-VSASVTEGQQN 306
V LWK + W C + + KG GS V+ S +G N
Sbjct: 300 GCVRLWKANYMDNWKC-TGILKGNGSPVNGSSQQGTSN 336
Score = 31.6 bits (70), Expect = 0.93
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 249 DVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSV 296
D++ VS+ +A D V +W +S G W C + GSV
Sbjct: 13 DLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSV 60
>gi|61743969 sec13-like protein isoform 2 [Homo sapiens]
Length = 360
Score = 151 bits (381), Expect = 8e-37
Identities = 103/338 (30%), Positives = 156/338 (46%), Gaps = 47/338 (13%)
Query: 1 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNI 59
+IHD D++G R+ATCSSD+SVK++D G A + H G VW+V WAHP +G +
Sbjct: 14 LIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQV 73
Query: 60 LASCSYDRKVIIWREENGT----------WEKSHEHAGHDSSVNSVCWAPHDYGLILACG 109
LASCS+DR +W E G W K +SV V +AP GL+LA
Sbjct: 74 LASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
Query: 110 SSDGAISLL---TYTGEGQWEVKKINNAHTIGCNAVSW--------APAVVPGSLIDHPS 158
S+DG + + QW ++ + + C+ +SW +P + GS P+
Sbjct: 134 SADGIVRIYEAPDVMNLSQWSLQH-EISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPN 192
Query: 159 GQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 218
I + E ++ + + L +D V D+A+AP++G +A
Sbjct: 193 AMAKVQIFEY-------------NENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILA 239
Query: 219 SCSQDGRVFIW------TCDDASSNTWSPKLLHKF---NDVVWHVSWSITANILAVSGGD 269
++D R+F + ++ +F N VW VSW+IT +LA SG D
Sbjct: 240 IATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDD 299
Query: 270 NKVTLWKESVDGQWVCISDVNKGQGS-VSASVTEGQQN 306
V LWK + W C + + KG GS V+ S +G N
Sbjct: 300 GCVRLWKANYMDNWKC-TGILKGNGSPVNGSSQQGTSN 336
Score = 31.6 bits (70), Expect = 0.93
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 249 DVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSV 296
D++ VS+ +A D V +W +S G W C + GSV
Sbjct: 13 DLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSV 60
>gi|4757988 WD repeat domain 39 [Homo sapiens]
Length = 339
Score = 103 bits (258), Expect = 1e-22
Identities = 83/280 (29%), Positives = 126/280 (45%), Gaps = 39/280 (13%)
Query: 11 GTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKV 69
GT LA+C DR ++I+ I + L GH+ V +VAW+ GN LAS S+D
Sbjct: 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP--CGNYLASASFDATT 85
Query: 70 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 129
IW++ +E GH++ V SV WAP G +LA S D ++ + E ++E
Sbjct: 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPS--GNLLATCSRDKSVWVWEVDEEDEYECV 143
Query: 130 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK 189
+ N+HT V W HPS + AS D+ +KL++EEED W
Sbjct: 144 SVLNSHTQDVKHVVW-----------HPSQE------LLASASYDDTVKLYREEED-DWV 185
Query: 190 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW-----------TCDDASSNT 238
LE H V +A+ PS +ASCS D V IW C + +
Sbjct: 186 CCATLEGHESTVWSLAFDPS----GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241
Query: 239 WSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKE 277
L F+ ++ ++W LA + GD+ + +++E
Sbjct: 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281
Score = 75.1 bits (183), Expect = 7e-14
Identities = 66/251 (26%), Positives = 113/251 (45%), Gaps = 32/251 (12%)
Query: 34 ILIADLRGH-EGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSS 91
+L+ + H + W +AW +P G +LASC DR++ IW E +W KS GH +
Sbjct: 6 VLLGRVPAHPDSRCWFLAW-NPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRT 63
Query: 92 VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG 151
V V W+P G LA S D A + + + +E H +V+WAP+ G
Sbjct: 64 VRKVAWSP--CGNYLASASFD-ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS---G 117
Query: 152 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 211
+L+ A+ D + +W+ +E+ +++ L +H+ V+ V W PS
Sbjct: 118 NLL--------------ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163
Query: 212 LPTSTIASCSQDGRVFIWTCDDASSNTW-SPKLLHKFNDVVWHVSWSITANILAVSGGDN 270
L +AS S D V ++ ++ + W L VW +++ + LA D
Sbjct: 164 L----LASASYDDTVKLYREEE---DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216
Query: 271 KVTLWKESVDG 281
V +W++ + G
Sbjct: 217 TVRIWRQYLPG 227
Score = 64.7 bits (156), Expect = 1e-10
Identities = 69/237 (29%), Positives = 99/237 (41%), Gaps = 40/237 (16%)
Query: 11 GTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 69
G LATCS D+SV +++V + ++ L H V V W HP +LAS SYD V
Sbjct: 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW-HPSQ-ELLASASYDDTV 174
Query: 70 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 129
++REE W GH+S+V S+ + P G LA S D + + W
Sbjct: 175 KLYREEEDDWVCCATLEGHESTVWSLAFDPS--GQRLASCSDDRTVRI--------WRQY 224
Query: 130 KINNAHTIGCNAV--SWAPAVVPGSLIDHPSGQKPNYIKRFA--------SGGC-DNLIK 178
N + C+ SW I SG I A + C D+ I+
Sbjct: 225 LPGNEQGVACSGSDPSW-------KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIR 277
Query: 179 LWKEEEDGQWKEE------QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 229
+++E+ + ++ +AHS V VAW P +ASCS DG V W
Sbjct: 278 VFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK---EPGLLASCSDDGEVAFW 331
Score = 52.8 bits (125), Expect = 4e-07
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 169 ASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 228
AS G D I++W E D + E H VR VAW+P + +AS S D I
Sbjct: 32 ASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC----GNYLASASFDATTCI 87
Query: 229 W--TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCI 286
W DD T L + V V+W+ + N+LA D V +W+ + ++ C+
Sbjct: 88 WKKNQDDFECVT----TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143
Query: 287 SDVN 290
S +N
Sbjct: 144 SVLN 147
Score = 50.4 bits (119), Expect = 2e-06
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 22/133 (16%)
Query: 8 DYYGTRLATCSSDRSVKIFDVRNGGQI-------------LIADLRG-HEGPVWQVAWAH 53
D G RLA+CS DR+V+I+ G I L G H ++ +AW
Sbjct: 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262
Query: 54 PMYGNILASCSYDRKVIIWREENGTWEK------SHEHAGHDSSVNSVCWAPHDYGLILA 107
+ G + +C D + + N ++ +H H H VN V W P + GL+ +
Sbjct: 263 -LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321
Query: 108 CGSSDGAISLLTY 120
C S DG ++ Y
Sbjct: 322 C-SDDGEVAFWKY 333
Score = 35.8 bits (81), Expect = 0.049
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 252 WHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKG 292
W ++W+ +LA GGD ++ +W D W+C S +++G
Sbjct: 20 WFLAWNPAGTLLASCGGDRRIRIWGTEGD-SWICKSVLSEG 59
>gi|4557741 platelet-activating factor acetylhydrolase, isoform Ib,
alpha subunit [Homo sapiens]
Length = 410
Score = 67.8 bits (164), Expect = 1e-11
Identities = 71/279 (25%), Positives = 119/279 (42%), Gaps = 27/279 (9%)
Query: 2 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILA 61
+ D D+ G LA+CS+D ++K++D + G I + GH+ V VA G+ +
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLWDFQ--GFECIRTMHGHDHNVSSVAIM--PNGDHIV 208
Query: 62 SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL-LTY 120
S S D+ + +W + G K+ GH V V P+ G ++A S+D + + +
Sbjct: 209 SASRDKTIKMWEVQTGYCVKT--FTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVA 264
Query: 121 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR---FASGGCDNLI 177
T E + E+++ + H + C +SWAP S+ + + K SG D I
Sbjct: 265 TKECKAELRE--HEHVVEC--ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320
Query: 178 KLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN 237
K+W + G L H +WVR V + I SC+ D + +W N
Sbjct: 321 KMW-DVSTGMCL--MTLVGHDNWVRGVLFHSG----GKFILSCADDKTLRVWD----YKN 369
Query: 238 TWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 276
K L+ V + + TA + D V +W+
Sbjct: 370 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 54.3 bits (129), Expect = 1e-07
Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 37/228 (16%)
Query: 39 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA 98
L GH PV +V + HP++ +++ S S D + +W E G +E++ + GH SV + +
Sbjct: 104 LSGHRSPVTRVIF-HPVF-SVMVSASEDATIKVWDYETGDFERTLK--GHTDSVQDISF- 158
Query: 99 PHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPS 158
G +LA S+D I L + G +E + + H ++V A++P DH
Sbjct: 159 -DHSGKLLASCSADMTIKLWDFQG---FECIRTMHGHDHNVSSV----AIMPNG--DH-- 206
Query: 159 GQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 218
S D IK+W E + G + H +WVR V + IA
Sbjct: 207 ---------IVSASRDKTIKMW-EVQTGYC--VKTFTGHREWVRMV----RPNQDGTLIA 250
Query: 219 SCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 266
SCS D V +W L + VV +SW+ ++ ++S
Sbjct: 251 SCSNDQTVRVWVVATKECKA----ELREHEHVVECISWAPESSYSSIS 294
>gi|115298668 WD repeat domain 57 (U5 snRNP specific) [Homo sapiens]
Length = 357
Score = 64.3 bits (155), Expect = 1e-10
Identities = 69/269 (25%), Positives = 109/269 (40%), Gaps = 38/269 (14%)
Query: 11 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 70
G+ LA+ DR + +++V G A L+GH G V ++ + G++L S S D+ V
Sbjct: 78 GSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD--GSMLFSASTDKTVA 134
Query: 71 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 130
+W E G E+ GH S VNS C+ ++ GS DG + L W+++K
Sbjct: 135 VWDSETG--ERVKRLKGHTSFVNS-CYPARRGPQLVCTGSDDGTVKL--------WDIRK 183
Query: 131 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 190
T AV D + SGG DN IK+W ++ K
Sbjct: 184 KAAIQTF--QNTYQVLAVTFNDTSD-----------QIISGGIDNDIKVWDLRQN---KL 227
Query: 191 EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL----LHK 246
+ H+D V + S+ S + S + D V +W + K+ +H
Sbjct: 228 TYTMRGHADSVTGL----SLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHN 283
Query: 247 FNDVVWHVSWSITANILAVSGGDNKVTLW 275
F + SWS + +A D V +W
Sbjct: 284 FEKNLLRCSWSPDGSKIAAGSADRFVYVW 312
>gi|32483361 apoptotic peptidase activating factor 1 isoform d [Homo
sapiens]
Length = 1205
Score = 63.9 bits (154), Expect = 2e-10
Identities = 66/282 (23%), Positives = 105/282 (37%), Gaps = 57/282 (20%)
Query: 11 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 70
G R+A+C +D+++++F G ++L +++ HE V A++ +A+CS D+KV
Sbjct: 627 GQRIASCGADKTLQVFKAETGEKLL--EIKAHEDEVLCCAFSTD--DRFIATCSVDKKVK 682
Query: 71 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 130
IW G E H + H VN + + L+LA GSSD + L Q E +
Sbjct: 683 IWNSMTG--ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL---NQKECRN 737
Query: 131 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 190
HT N ++P K AS D +KLW + K
Sbjct: 738 TMFGHTNSVNHCRFSPD-----------------DKLLASCSADGTLKLWDATSANERKS 780
Query: 191 ----------EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS 240
E E V+ +W+ + ++F+W D S
Sbjct: 781 INVKQFFLNLEDPQEDMEVIVKCCSWSAD-----GARIMVAAKNKIFLWNTDSRS----- 830
Query: 241 PKLLHKFNDVVWHVSW------SITANILAVSGGDNKVTLWK 276
K D H+SW S + S D + LW+
Sbjct: 831 -----KVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE 867
>gi|4502123 apoptotic peptidase activating factor 1 isoform b [Homo
sapiens]
Length = 1194
Score = 63.9 bits (154), Expect = 2e-10
Identities = 66/282 (23%), Positives = 105/282 (37%), Gaps = 57/282 (20%)
Query: 11 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 70
G R+A+C +D+++++F G ++L +++ HE V A++ +A+CS D+KV
Sbjct: 616 GQRIASCGADKTLQVFKAETGEKLL--EIKAHEDEVLCCAFSTD--DRFIATCSVDKKVK 671
Query: 71 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 130
IW G E H + H VN + + L+LA GSSD + L Q E +
Sbjct: 672 IWNSMTG--ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL---NQKECRN 726
Query: 131 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 190
HT N ++P K AS D +KLW + K
Sbjct: 727 TMFGHTNSVNHCRFSPD-----------------DKLLASCSADGTLKLWDATSANERKS 769
Query: 191 ----------EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS 240
E E V+ +W+ + ++F+W D S
Sbjct: 770 INVKQFFLNLEDPQEDMEVIVKCCSWSAD-----GARIMVAAKNKIFLWNTDSRS----- 819
Query: 241 PKLLHKFNDVVWHVSW------SITANILAVSGGDNKVTLWK 276
K D H+SW S + S D + LW+
Sbjct: 820 -----KVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE 856
>gi|19913367 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 62.8 bits (151), Expect = 4e-10
Identities = 74/308 (24%), Positives = 114/308 (37%), Gaps = 83/308 (26%)
Query: 11 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 70
GT LA S D +I+ NG L + L H+GP++ + W GN + S D+ I
Sbjct: 247 GTLLAMGSYDGFARIW-TENGN--LASTLGQHKGPIFALKWNKK--GNYVLSAGVDKTTI 301
Query: 71 IWREENGT----------------WEKSHEHA-----------------------GHDSS 91
IW G W+ + A GH +
Sbjct: 302 IWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNE 361
Query: 92 VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA-----VSWAP 146
VN++ W P G++LA S D + + W +K+ H + ++ + W+P
Sbjct: 362 VNAIKWDPS--GMLLASCSDDMTLKI--------WSMKQDACVHDLQAHSKEIYTIKWSP 411
Query: 147 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 206
P+ PN AS D+ ++LW E Q L H + V VA+
Sbjct: 412 T--------GPATSNPNSSIMLASASFDSTVRLWDVE---QGVCTHTLMKHQEPVYSVAF 460
Query: 207 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV--VWHVSWSITANILA 264
+P +AS S D V IW NT S L+H + ++ V W+ + +
Sbjct: 461 SPD----GKYLASGSFDKYVHIW-------NTQSGSLVHSYQGTGGIFEVCWNARGDKVG 509
Query: 265 VSGGDNKV 272
S D V
Sbjct: 510 ASASDGSV 517
Score = 51.2 bits (121), Expect = 1e-06
Identities = 71/265 (26%), Positives = 102/265 (38%), Gaps = 56/265 (21%)
Query: 39 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR-EENGTWEKSH-------EHAGHD- 89
LRGHE V+ AW +P+ ++LAS S D IW EN + GHD
Sbjct: 175 LRGHESEVFICAW-NPV-SDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV 232
Query: 90 ---SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 146
V S+ W + G +LA GS DG + T G N A T+G +
Sbjct: 233 PSNKDVTSLDW--NSDGTLLAMGSYDGFARIWTENG---------NLASTLGQH------ 275
Query: 147 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 206
G + +K NY+ S G D +W + G+ K Q+ HS DV W
Sbjct: 276 ---KGPIFALKWNKKGNYV---LSAGVDKTTIIW-DAHTGEAK--QQFPFHSAPALDVDW 326
Query: 207 APSIGLPTSTIASCSQDGRVFIWT--CDDASSNTWSPKLLHKFNDVVWHVSWSITANILA 264
++ T ASCS D + + CD K + V + W + +LA
Sbjct: 327 QNNM-----TFASCSTDMCIHVCRLGCDH------PVKTFQGHTNEVNAIKWDPSGMLLA 375
Query: 265 VSGGDNKVTLWKESVDGQWVCISDV 289
D + +W D C+ D+
Sbjct: 376 SCSDDMTLKIWSMKQD---ACVHDL 397
Score = 51.2 bits (121), Expect = 1e-06
Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 14 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 73
LA+ S D +V+++DV G + L H+ PV+ VA++ G LAS S+D+ V IW
Sbjct: 425 LASASFDSTVRLWDVEQG--VCTHTLMKHQEPVYSVAFSPD--GKYLASGSFDKYVHIWN 480
Query: 74 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 118
++G+ S++ G + VCW + G + +SDG++ +L
Sbjct: 481 TQSGSLVHSYQGTG---GIFEVCW--NARGDKVGASASDGSVCVL 520
Score = 50.1 bits (118), Expect = 3e-06
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 2 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWA-------HP 54
++ + D G LA+CS D ++KI+ ++ + DL+ H ++ + W+ +P
Sbjct: 362 VNAIKWDPSGMLLASCSDDMTLKIWSMKQDA--CVHDLQAHSKEIYTIKWSPTGPATSNP 419
Query: 55 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 112
+LAS S+D V +W E G +H H V SV ++P G LA GS D
Sbjct: 420 NSSIMLASASFDSTVRLWDVEQGVC--THTLMKHQEPVYSVAFSPD--GKYLASGSFD 473
Score = 43.9 bits (102), Expect = 2e-04
Identities = 76/302 (25%), Positives = 115/302 (38%), Gaps = 56/302 (18%)
Query: 14 LATCSSDRSVKIFDVR---NGGQILIADLR------GHEGP----VWQVAWAHPMYGNIL 60
LA+ S D + +I+++ NGG + LR GH+ P V + W G +L
Sbjct: 194 LASGSGDSTARIWNLNENSNGGSTQLV-LRHCIREGGHDVPSNKDVTSLDWNSD--GTLL 250
Query: 61 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 120
A SYD IW E +H G + ++ W +L+ G I +
Sbjct: 251 AMGSYDGFARIWTENGNLASTLGQHKG---PIFALKWNKKG-NYVLSAGVDKTTIIWDAH 306
Query: 121 TGEGQ----------WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP------SGQKPNY 164
TGE + +V NN C+ G DHP + N
Sbjct: 307 TGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLG--CDHPVKTFQGHTNEVNA 364
Query: 165 IKRFASG----GC--DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA---PSIGLPTS 215
IK SG C D +K+W ++D + L+AHS + + W+ P+ P S
Sbjct: 365 IKWDPSGMLLASCSDDMTLKIWSMKQDACVHD---LQAHSKEIYTIKWSPTGPATSNPNS 421
Query: 216 TI--ASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT 273
+I AS S D V +W + L K + V+ V++S LA D V
Sbjct: 422 SIMLASASFDSTVRLWDVEQGVCT----HTLMKHQEPVYSVAFSPDGKYLASGSFDKYVH 477
Query: 274 LW 275
+W
Sbjct: 478 IW 479
>gi|19913365 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 62.8 bits (151), Expect = 4e-10
Identities = 74/308 (24%), Positives = 114/308 (37%), Gaps = 83/308 (26%)
Query: 11 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 70
GT LA S D +I+ NG L + L H+GP++ + W GN + S D+ I
Sbjct: 247 GTLLAMGSYDGFARIW-TENGN--LASTLGQHKGPIFALKWNKK--GNYVLSAGVDKTTI 301
Query: 71 IWREENGT----------------WEKSHEHA-----------------------GHDSS 91
IW G W+ + A GH +
Sbjct: 302 IWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNE 361
Query: 92 VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA-----VSWAP 146
VN++ W P G++LA S D + + W +K+ H + ++ + W+P
Sbjct: 362 VNAIKWDPS--GMLLASCSDDMTLKI--------WSMKQDACVHDLQAHSKEIYTIKWSP 411
Query: 147 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 206
P+ PN AS D+ ++LW E Q L H + V VA+
Sbjct: 412 T--------GPATSNPNSSIMLASASFDSTVRLWDVE---QGVCTHTLMKHQEPVYSVAF 460
Query: 207 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV--VWHVSWSITANILA 264
+P +AS S D V IW NT S L+H + ++ V W+ + +
Sbjct: 461 SPD----GKYLASGSFDKYVHIW-------NTQSGSLVHSYQGTGGIFEVCWNARGDKVG 509
Query: 265 VSGGDNKV 272
S D V
Sbjct: 510 ASASDGSV 517
Score = 51.2 bits (121), Expect = 1e-06
Identities = 71/265 (26%), Positives = 102/265 (38%), Gaps = 56/265 (21%)
Query: 39 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR-EENGTWEKSH-------EHAGHD- 89
LRGHE V+ AW +P+ ++LAS S D IW EN + GHD
Sbjct: 175 LRGHESEVFICAW-NPV-SDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV 232
Query: 90 ---SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 146
V S+ W + G +LA GS DG + T G N A T+G +
Sbjct: 233 PSNKDVTSLDW--NSDGTLLAMGSYDGFARIWTENG---------NLASTLGQH------ 275
Query: 147 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 206
G + +K NY+ S G D +W + G+ K Q+ HS DV W
Sbjct: 276 ---KGPIFALKWNKKGNYV---LSAGVDKTTIIW-DAHTGEAK--QQFPFHSAPALDVDW 326
Query: 207 APSIGLPTSTIASCSQDGRVFIWT--CDDASSNTWSPKLLHKFNDVVWHVSWSITANILA 264
++ T ASCS D + + CD K + V + W + +LA
Sbjct: 327 QNNM-----TFASCSTDMCIHVCRLGCDH------PVKTFQGHTNEVNAIKWDPSGMLLA 375
Query: 265 VSGGDNKVTLWKESVDGQWVCISDV 289
D + +W D C+ D+
Sbjct: 376 SCSDDMTLKIWSMKQD---ACVHDL 397
Score = 51.2 bits (121), Expect = 1e-06
Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 14 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 73
LA+ S D +V+++DV G + L H+ PV+ VA++ G LAS S+D+ V IW
Sbjct: 425 LASASFDSTVRLWDVEQG--VCTHTLMKHQEPVYSVAFSPD--GKYLASGSFDKYVHIWN 480
Query: 74 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 118
++G+ S++ G + VCW + G + +SDG++ +L
Sbjct: 481 TQSGSLVHSYQGTG---GIFEVCW--NARGDKVGASASDGSVCVL 520
Score = 50.1 bits (118), Expect = 3e-06
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 2 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWA-------HP 54
++ + D G LA+CS D ++KI+ ++ + DL+ H ++ + W+ +P
Sbjct: 362 VNAIKWDPSGMLLASCSDDMTLKIWSMKQDA--CVHDLQAHSKEIYTIKWSPTGPATSNP 419
Query: 55 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 112
+LAS S+D V +W E G +H H V SV ++P G LA GS D
Sbjct: 420 NSSIMLASASFDSTVRLWDVEQGVC--THTLMKHQEPVYSVAFSPD--GKYLASGSFD 473
Score = 43.9 bits (102), Expect = 2e-04
Identities = 76/302 (25%), Positives = 115/302 (38%), Gaps = 56/302 (18%)
Query: 14 LATCSSDRSVKIFDVR---NGGQILIADLR------GHEGP----VWQVAWAHPMYGNIL 60
LA+ S D + +I+++ NGG + LR GH+ P V + W G +L
Sbjct: 194 LASGSGDSTARIWNLNENSNGGSTQLV-LRHCIREGGHDVPSNKDVTSLDWNSD--GTLL 250
Query: 61 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 120
A SYD IW E +H G + ++ W +L+ G I +
Sbjct: 251 AMGSYDGFARIWTENGNLASTLGQHKG---PIFALKWNKKG-NYVLSAGVDKTTIIWDAH 306
Query: 121 TGEGQ----------WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP------SGQKPNY 164
TGE + +V NN C+ G DHP + N
Sbjct: 307 TGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLG--CDHPVKTFQGHTNEVNA 364
Query: 165 IKRFASG----GC--DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA---PSIGLPTS 215
IK SG C D +K+W ++D + L+AHS + + W+ P+ P S
Sbjct: 365 IKWDPSGMLLASCSDDMTLKIWSMKQDACVHD---LQAHSKEIYTIKWSPTGPATSNPNS 421
Query: 216 TI--ASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT 273
+I AS S D V +W + L K + V+ V++S LA D V
Sbjct: 422 SIMLASASFDSTVRLWDVEQGVCT----HTLMKHQEPVYSVAFSPDGKYLASGSFDKYVH 477
Query: 274 LW 275
+W
Sbjct: 478 IW 479
>gi|15150805 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 62.8 bits (151), Expect = 4e-10
Identities = 74/308 (24%), Positives = 114/308 (37%), Gaps = 83/308 (26%)
Query: 11 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 70
GT LA S D +I+ NG L + L H+GP++ + W GN + S D+ I
Sbjct: 247 GTLLAMGSYDGFARIW-TENGN--LASTLGQHKGPIFALKWNKK--GNYVLSAGVDKTTI 301
Query: 71 IWREENGT----------------WEKSHEHA-----------------------GHDSS 91
IW G W+ + A GH +
Sbjct: 302 IWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNE 361
Query: 92 VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA-----VSWAP 146
VN++ W P G++LA S D + + W +K+ H + ++ + W+P
Sbjct: 362 VNAIKWDPS--GMLLASCSDDMTLKI--------WSMKQDACVHDLQAHSKEIYTIKWSP 411
Query: 147 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 206
P+ PN AS D+ ++LW E Q L H + V VA+
Sbjct: 412 T--------GPATSNPNSSIMLASASFDSTVRLWDVE---QGVCTHTLMKHQEPVYSVAF 460
Query: 207 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV--VWHVSWSITANILA 264
+P +AS S D V IW NT S L+H + ++ V W+ + +
Sbjct: 461 SPD----GKYLASGSFDKYVHIW-------NTQSGSLVHSYQGTGGIFEVCWNARGDKVG 509
Query: 265 VSGGDNKV 272
S D V
Sbjct: 510 ASASDGSV 517
Score = 51.2 bits (121), Expect = 1e-06
Identities = 71/265 (26%), Positives = 102/265 (38%), Gaps = 56/265 (21%)
Query: 39 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR-EENGTWEKSH-------EHAGHD- 89
LRGHE V+ AW +P+ ++LAS S D IW EN + GHD
Sbjct: 175 LRGHESEVFICAW-NPV-SDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV 232
Query: 90 ---SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 146
V S+ W + G +LA GS DG + T G N A T+G +
Sbjct: 233 PSNKDVTSLDW--NSDGTLLAMGSYDGFARIWTENG---------NLASTLGQH------ 275
Query: 147 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 206
G + +K NY+ S G D +W + G+ K Q+ HS DV W
Sbjct: 276 ---KGPIFALKWNKKGNYV---LSAGVDKTTIIW-DAHTGEAK--QQFPFHSAPALDVDW 326
Query: 207 APSIGLPTSTIASCSQDGRVFIWT--CDDASSNTWSPKLLHKFNDVVWHVSWSITANILA 264
++ T ASCS D + + CD K + V + W + +LA
Sbjct: 327 QNNM-----TFASCSTDMCIHVCRLGCDH------PVKTFQGHTNEVNAIKWDPSGMLLA 375
Query: 265 VSGGDNKVTLWKESVDGQWVCISDV 289
D + +W D C+ D+
Sbjct: 376 SCSDDMTLKIWSMKQD---ACVHDL 397
Score = 51.2 bits (121), Expect = 1e-06
Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 14 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 73
LA+ S D +V+++DV G + L H+ PV+ VA++ G LAS S+D+ V IW
Sbjct: 425 LASASFDSTVRLWDVEQG--VCTHTLMKHQEPVYSVAFSPD--GKYLASGSFDKYVHIWN 480
Query: 74 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 118
++G+ S++ G + VCW + G + +SDG++ +L
Sbjct: 481 TQSGSLVHSYQGTG---GIFEVCW--NARGDKVGASASDGSVCVL 520
Score = 50.1 bits (118), Expect = 3e-06
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 2 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWA-------HP 54
++ + D G LA+CS D ++KI+ ++ + DL+ H ++ + W+ +P
Sbjct: 362 VNAIKWDPSGMLLASCSDDMTLKIWSMKQDA--CVHDLQAHSKEIYTIKWSPTGPATSNP 419
Query: 55 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 112
+LAS S+D V +W E G +H H V SV ++P G LA GS D
Sbjct: 420 NSSIMLASASFDSTVRLWDVEQGVC--THTLMKHQEPVYSVAFSPD--GKYLASGSFD 473
Score = 43.9 bits (102), Expect = 2e-04
Identities = 76/302 (25%), Positives = 115/302 (38%), Gaps = 56/302 (18%)
Query: 14 LATCSSDRSVKIFDVR---NGGQILIADLR------GHEGP----VWQVAWAHPMYGNIL 60
LA+ S D + +I+++ NGG + LR GH+ P V + W G +L
Sbjct: 194 LASGSGDSTARIWNLNENSNGGSTQLV-LRHCIREGGHDVPSNKDVTSLDWNSD--GTLL 250
Query: 61 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 120
A SYD IW E +H G + ++ W +L+ G I +
Sbjct: 251 AMGSYDGFARIWTENGNLASTLGQHKG---PIFALKWNKKG-NYVLSAGVDKTTIIWDAH 306
Query: 121 TGEGQ----------WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP------SGQKPNY 164
TGE + +V NN C+ G DHP + N
Sbjct: 307 TGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLG--CDHPVKTFQGHTNEVNA 364
Query: 165 IKRFASG----GC--DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA---PSIGLPTS 215
IK SG C D +K+W ++D + L+AHS + + W+ P+ P S
Sbjct: 365 IKWDPSGMLLASCSDDMTLKIWSMKQDACVHD---LQAHSKEIYTIKWSPTGPATSNPNS 421
Query: 216 TI--ASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT 273
+I AS S D V +W + L K + V+ V++S LA D V
Sbjct: 422 SIMLASASFDSTVRLWDVEQGVCT----HTLMKHQEPVYSVAFSPDGKYLASGSFDKYVH 477
Query: 274 LW 275
+W
Sbjct: 478 IW 479
>gi|32483359 apoptotic peptidase activating factor 1 isoform c [Homo
sapiens]
Length = 1248
Score = 60.1 bits (144), Expect = 2e-09
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 26/170 (15%)
Query: 11 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 70
G R+A+C +D+++++F G ++L +++ HE V A++ +A+CS D+KV
Sbjct: 627 GQRIASCGADKTLQVFKAETGEKLL--EIKAHEDEVLCCAFSTD--DRFIATCSVDKKVK 682
Query: 71 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 130
IW G E H + H VN + + L+LA GSSD + L Q E +
Sbjct: 683 IWNSMTG--ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL---NQKECRN 737
Query: 131 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW 180
HT N ++P K AS D +KLW
Sbjct: 738 TMFGHTNSVNHCRFSPD-----------------DKLLASCSADGTLKLW 770
Score = 33.1 bits (74), Expect = 0.32
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 166 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 225
+R AS G D ++++K E + E ++AH D V A++ IA+CS D +
Sbjct: 628 QRIASCGADKTLQVFKAETGEKLLE---IKAHEDEVLCCAFSTD----DRFIATCSVDKK 680
Query: 226 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-----ILAVSGGDNKVTLW 275
V IW N+ + +L+H +++ V+ N +LA D + LW
Sbjct: 681 VKIW-------NSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 728
Score = 32.7 bits (73), Expect = 0.42
Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 35/199 (17%)
Query: 39 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA 98
+R H V+ ++ G +ASC D+ + +++ E G EK E H+ V +C A
Sbjct: 611 VRPHTDAVYHACFSED--GQRIASCGADKTLQVFKAETG--EKLLEIKAHEDEV--LCCA 664
Query: 99 PHDYGLILACGSSDGAISLL-TYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP 157
+A S D + + + TGE + + H+ N + +
Sbjct: 665 FSTDDRFIATCSVDKKVKIWNSMTGE----LVHTYDEHSEQVNCCHFTNS---------- 710
Query: 158 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE-EQKLEAHSDWVRDVAWAPSIGLPTST 216
++ A+G D +KLW D KE + H++ V ++P L
Sbjct: 711 -----SHHLLLATGSSDCFLKLW----DLNQKECRNTMFGHTNSVNHCRFSPDDKL---- 757
Query: 217 IASCSQDGRVFIWTCDDAS 235
+ASCS DG + +W A+
Sbjct: 758 LASCSADGTLKLWDATSAN 776
>gi|7108333 apoptotic peptidase activating factor 1 isoform a [Homo
sapiens]
Length = 1237
Score = 60.1 bits (144), Expect = 2e-09
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 26/170 (15%)
Query: 11 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 70
G R+A+C +D+++++F G ++L +++ HE V A++ +A+CS D+KV
Sbjct: 616 GQRIASCGADKTLQVFKAETGEKLL--EIKAHEDEVLCCAFSTD--DRFIATCSVDKKVK 671
Query: 71 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 130
IW G E H + H VN + + L+LA GSSD + L Q E +
Sbjct: 672 IWNSMTG--ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL---NQKECRN 726
Query: 131 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW 180
HT N ++P K AS D +KLW
Sbjct: 727 TMFGHTNSVNHCRFSPD-----------------DKLLASCSADGTLKLW 759
Score = 33.1 bits (74), Expect = 0.32
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 166 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 225
+R AS G D ++++K E + E ++AH D V A++ IA+CS D +
Sbjct: 617 QRIASCGADKTLQVFKAETGEKLLE---IKAHEDEVLCCAFSTD----DRFIATCSVDKK 669
Query: 226 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-----ILAVSGGDNKVTLW 275
V IW N+ + +L+H +++ V+ N +LA D + LW
Sbjct: 670 VKIW-------NSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 717
Score = 32.7 bits (73), Expect = 0.42
Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 35/199 (17%)
Query: 39 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA 98
+R H V+ ++ G +ASC D+ + +++ E G EK E H+ V +C A
Sbjct: 600 VRPHTDAVYHACFSED--GQRIASCGADKTLQVFKAETG--EKLLEIKAHEDEV--LCCA 653
Query: 99 PHDYGLILACGSSDGAISLL-TYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP 157
+A S D + + + TGE + + H+ N + +
Sbjct: 654 FSTDDRFIATCSVDKKVKIWNSMTGE----LVHTYDEHSEQVNCCHFTNS---------- 699
Query: 158 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE-EQKLEAHSDWVRDVAWAPSIGLPTST 216
++ A+G D +KLW D KE + H++ V ++P L
Sbjct: 700 -----SHHLLLATGSSDCFLKLW----DLNQKECRNTMFGHTNSVNHCRFSPDDKL---- 746
Query: 217 IASCSQDGRVFIWTCDDAS 235
+ASCS DG + +W A+
Sbjct: 747 LASCSADGTLKLWDATSAN 765
>gi|7657439 PCAF associated factor 65 beta isoform a [Homo sapiens]
Length = 589
Score = 59.3 bits (142), Expect = 4e-09
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 41/219 (18%)
Query: 14 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 73
L +CS D S++ +D+ + ++ +GH PVW + + Y AS S+DR +W
Sbjct: 357 LLSCSEDMSIRYWDLGSFTNTVL--YQGHAYPVWDLDISP--YSLYFASGSHDRTARLW- 411
Query: 74 EENGTWEKSHE---HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 130
++++++ +AGH + V+ V + P+ LA GS+D + L W ++
Sbjct: 412 ----SFDRTYPLRIYAGHLADVDCVKFHPNSN--YLATGSTDKTVRL--------WSAQQ 457
Query: 131 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 190
N+ + P + SL P+G K AS G D +KLW +KE
Sbjct: 458 GNSVRLFTGHR---GPVL---SLAFSPNG------KYLASAGEDQRLKLWDLASGTLYKE 505
Query: 191 EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 229
L H+D + + ++P GL IAS S D V +W
Sbjct: 506 ---LRGHTDNITSLTFSPDSGL----IASASMDNSVRVW 537
Score = 52.8 bits (125), Expect = 4e-07
Identities = 60/237 (25%), Positives = 101/237 (42%), Gaps = 37/237 (15%)
Query: 39 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA 98
LRGH GPV+ + G L SCS D + W + G++ + + GH V + +
Sbjct: 338 LRGHCGPVYSTRFLADSSG--LLSCSEDMSIRYW--DLGSFTNTVLYQGHAYPVWDLDIS 393
Query: 99 PHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPS 158
P Y L A GS D L ++ + +I H + V + HP+
Sbjct: 394 P--YSLYFASGSHDRTARLWSFD---RTYPLRIYAGHLADVDCVKF-----------HPN 437
Query: 159 GQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 218
NY+ A+G D ++LW + Q + H V +A++P+ +A
Sbjct: 438 S---NYL---ATGSTDKTVRLWSAQ---QGNSVRLFTGHRGPVLSLAFSPN----GKYLA 484
Query: 219 SCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 275
S +D R+ +W D +S T K L D + +++S + ++A + DN V +W
Sbjct: 485 SAGEDQRLKLW---DLASGTLY-KELRGHTDNITSLTFSPDSGLIASASMDNSVRVW 537
>gi|19913369 transducin beta-like 3 [Homo sapiens]
Length = 808
Score = 58.2 bits (139), Expect = 9e-09
Identities = 69/286 (24%), Positives = 110/286 (38%), Gaps = 48/286 (16%)
Query: 11 GTRLATCSSDRSVKIFDVRNGGQIL-IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 69
G A+C+ D+SV+I+ + GQ++ +A GH V V + + + L + S D V
Sbjct: 388 GWLFASCAKDQSVRIWRMNKAGQVMCVAQGSGHTHSVGTVCCSR-LKESFLVTGSQDCTV 446
Query: 70 IIW-----------REENG--TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS 116
+W +NG + HD +NSV AP+D +LA GS D
Sbjct: 447 KLWPLPKALLSKNTAPDNGPILLQAQTTQRCHDKDINSVAIAPND--KLLATGSQDRTAK 504
Query: 117 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL 176
L Q ++ + + H G V ++P + A+ D
Sbjct: 505 LWALP---QCQLLGVFSGHRRGLWCVQFSP-----------------MDQVLATASADGT 544
Query: 177 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS 236
IKLW ++ K E H V VA+ + + S DG V +WT
Sbjct: 545 IKLWALQDFSCLK---TFEGHDASVLKVAFVSR----GTQLLSSGSDGLVKLWTI----K 593
Query: 237 NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQ 282
N + L D VW + S + D++V LWK+ + +
Sbjct: 594 NNECVRTLDAHEDKVWGLHCSRLDDHALTGASDSRVILWKDVTEAE 639
Score = 43.5 bits (101), Expect = 2e-04
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 30/180 (16%)
Query: 14 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 73
LAT S DR+ K++ + L+ GH +W V ++ PM +LA+ S D + +W
Sbjct: 494 LATGSQDRTAKLWALPQCQ--LLGVFSGHRRGLWCVQFS-PM-DQVLATASADGTIKLWA 549
Query: 74 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN 133
++ + K+ E GHD+SV V + G L SDG + L W +K
Sbjct: 550 LQDFSCLKTFE--GHDASVLKVAFVSR--GTQLLSSGSDGLVKL--------WTIKNNEC 597
Query: 134 AHTIGCNAVS-WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQ 192
T+ + W + L DH +G D+ + LWK+ + + EEQ
Sbjct: 598 VRTLDAHEDKVWG--LHCSRLDDHA-----------LTGASDSRVILWKDVTEAEQAEEQ 644
>gi|4506439 retinoblastoma binding protein 7 [Homo sapiens]
Length = 425
Score = 57.8 bits (138), Expect = 1e-08
Identities = 58/239 (24%), Positives = 100/239 (41%), Gaps = 52/239 (21%)
Query: 14 LATCSSDRSVKIFDVRNG---GQILIAD--LRGHEGPVWQVAWAHPMYGNILASCSYDRK 68
L + S D +V ++D+ G G+I+ A GH V VAW H ++ ++ S + D+K
Sbjct: 192 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW-HLLHESLFGSVADDQK 250
Query: 69 VIIWREENGTWEK-SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE 127
++IW + T K SH H + VN + + P+ ILA GS+D ++L W+
Sbjct: 251 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS-EFILATGSADKTVAL--------WD 301
Query: 128 VKKIN------NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK 181
++ + +H V W+ P+ AS G D + +W
Sbjct: 302 LRNLKLKLHTFESHKDEIFQVHWS----------------PHNETILASSGTDRRLNVWD 345
Query: 182 EEEDGQWKEEQKLE-----------AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 229
+ G+ + + E H+ + D +W P+ I S S+D + IW
Sbjct: 346 LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPN---EPWVICSVSEDNIMQIW 401
Score = 40.4 bits (93), Expect = 0.002
Identities = 61/288 (21%), Positives = 107/288 (37%), Gaps = 58/288 (20%)
Query: 39 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA-----GHDSSVN 93
LRGH+ + ++W + G++L S S D V +W G E A GH + V
Sbjct: 172 LRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 230
Query: 94 SVCW-APHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 152
V W H+ + + D + + + + +AHT N +S+ P
Sbjct: 231 DVAWHLLHE--SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP------ 282
Query: 153 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL 212
+I A+G D + LW + + E+H D + V W+P
Sbjct: 283 --------YSEFI--LATGSADKTVALW--DLRNLKLKLHTFESHKDEIFQVHWSPH--- 327
Query: 213 PTSTIASCSQDGRVFIW---------TCDDASSNTWSPKLLH-----KFNDVVWHVS--W 256
+ +AS D R+ +W + +DA +H K +D W+ + W
Sbjct: 328 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 387
Query: 257 SITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQ 304
++ DN + +W+ + + N + V+ S EGQ
Sbjct: 388 -----VICSVSEDNIMQIWQ-------MAENIYNDEESDVTTSELEGQ 423
>gi|23199987 WD repeat domain 5B [Homo sapiens]
Length = 330
Score = 55.1 bits (131), Expect = 8e-08
Identities = 71/249 (28%), Positives = 101/249 (40%), Gaps = 36/249 (14%)
Query: 30 NGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD 89
N L L GH V V ++ G LAS S DR +IIW +G +EK+ GH+
Sbjct: 28 NPNYALKCTLVGHTEAVSSVKFSPN--GEWLASSSADRLIIIWGAYDGKYEKT--LYGHN 83
Query: 90 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 149
++ V W+ L+ A S D + L + K ++ + CN + P
Sbjct: 84 LEISDVAWSSDSSRLVSA--SDDKTLKLWDVRSGKCLKTLKGHSNYVFCCN---FNP--- 135
Query: 150 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPS 209
P +LI SG D +K+W+ + K + L AHSD V V + S
Sbjct: 136 PSNLI--------------ISGSFDETVKIWEVKTG---KCLKTLSAHSDPVSAVHFNCS 178
Query: 210 IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGD 269
S I S S DG IW DA+S L+ N V V +S + + D
Sbjct: 179 ----GSLIVSGSYDGLCRIW---DAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLD 231
Query: 270 NKVTLWKES 278
N + LW S
Sbjct: 232 NTLKLWDYS 240
Score = 47.0 bits (110), Expect = 2e-05
Identities = 67/258 (25%), Positives = 110/258 (42%), Gaps = 47/258 (18%)
Query: 2 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILA 61
I D +RL + S D+++K++DVR+G + L+GH V+ + P N++
Sbjct: 86 ISDVAWSSDSSRLVSASDDKTLKLWDVRSGK--CLKTLKGHSNYVFCCNFNPP--SNLII 141
Query: 62 SCSYDRKVIIWREENGTWEKS-HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 120
S S+D V IW + G K+ H+ S+V+ C G ++ GS DG + +
Sbjct: 142 SGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNC-----SGSLIVSGSYDG-LCRIWD 195
Query: 121 TGEGQWEVKKINNAHTIGCNAVSWAP-------AVVPGSL----------IDHPSGQKPN 163
GQ +K + + + V ++P A + +L + +G K
Sbjct: 196 AASGQC-LKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNE 254
Query: 164 YIKRFA-----------SGGCDNLIKLWKEEEDGQWKE-EQKLEAHSDWVRDVAWAPSIG 211
FA SG DNL+ +W + Q KE QKL+ H+D V A P+
Sbjct: 255 KYCIFANFSVTGGKWIVSGSEDNLVYIW----NLQTKEIVQKLQGHTDVVISAACHPTEN 310
Query: 212 LPTSTIASCSQDGRVFIW 229
L S A+ D + +W
Sbjct: 311 LIAS--AALENDKTIKLW 326
>gi|14150171 THO complex 3 [Homo sapiens]
Length = 351
Score = 53.9 bits (128), Expect = 2e-07
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 27/204 (13%)
Query: 2 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILA 61
+H G RLA+ S D++ +F + + + RGH V Q+ W HP ++
Sbjct: 58 VHSVAWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSVDQLCW-HPSNPDLFV 116
Query: 62 SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL--- 118
+ S D+ + IW + G + ++CW+P G +A G+ D ++ +
Sbjct: 117 TASGDKTIRIWDVRTTKCIATVNTKGENI---NICWSPD--GQTIAVGNKDDVVTFIDAK 171
Query: 119 TYTGEGQ----WEVKKI--NNAHTI-------GCNAVSWAPAVVPGSLID-HPSG----Q 160
T+ + + +EV +I NN + + GC + P + P I+ HPS +
Sbjct: 172 THRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIK 231
Query: 161 KPNYIKRFASGGCDNLIKLWKEEE 184
K FA+G D L+ LW +E
Sbjct: 232 FDPMGKYFATGSADALVSLWDVDE 255
Score = 42.4 bits (98), Expect = 5e-04
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 42 HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD 101
H V VAW+ G LAS S+D+ ++ E K + + GH SV+ +CW P +
Sbjct: 54 HSAKVHSVAWSCD--GRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSVDQLCWHPSN 111
Query: 102 YGLILACGSSDGAISLLTYTGEGQWEV---KKINNAHTIGCNA-VSWAP 146
L + S D I + W+V K I +T G N + W+P
Sbjct: 112 PDLFVT-ASGDKTIRI--------WDVRTTKCIATVNTKGENINICWSP 151
>gi|237820620 glutamate-rich WD repeat containing 1 [Homo sapiens]
Length = 446
Score = 52.8 bits (125), Expect = 4e-07
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 162 PNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK-LEAHSDWVRDVAWAPSIGLPTSTIASC 220
P R +G C I LW + G W +Q+ H+ V D+ W+P+ + ASC
Sbjct: 224 PRVTGRLLTGDCQKNIHLWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPT---ENTVFASC 280
Query: 221 SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 275
S D + IW A S + V +SWS L G D + +W
Sbjct: 281 SADASIRIWDIRAAPSKACMLTTATAHDGDVNVISWSRREPFLLSGGDDGALKIW 335
Score = 42.0 bits (97), Expect = 7e-04
Identities = 42/205 (20%), Positives = 76/205 (37%), Gaps = 41/205 (20%)
Query: 36 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE-ENGTWEKSHE-HAGHDSSVN 93
I GH G + + W+ + G +L + + +W + G+W GH SV
Sbjct: 207 IFSFAGHMGEGFALDWSPRVTGRLLTG-DCQKNIHLWTPTDGGSWHVDQRPFVGHTRSVE 265
Query: 94 SVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN---------AHTIGCNAVSW 144
+ W+P + + +C S+D +I + W+++ + AH N +SW
Sbjct: 266 DLQWSPTENTVFASC-SADASIRI--------WDIRAAPSKACMLTTATAHDGDVNVISW 316
Query: 145 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDV 204
S ++P + SGG D +K+W + + H V V
Sbjct: 317 -------------SRREPFLL----SGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSV 359
Query: 205 AWAPSIGLPTSTIASCSQDGRVFIW 229
W P + A+ D ++ W
Sbjct: 360 EWHPQ---DSGVFAASGADHQITQW 381
Score = 41.6 bits (96), Expect = 9e-04
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 27/174 (15%)
Query: 13 RLATCSSDRSVKIFDVRNGGQILIADLR---GHEGPVWQVAWAHPMYGNILASCSYDRKV 69
RL T +++ ++ +GG + D R GH V + W+ P + ASCS D +
Sbjct: 229 RLLTGDCQKNIHLWTPTDGGSWHV-DQRPFVGHTRSVEDLQWS-PTENTVFASCSADASI 286
Query: 70 IIW--REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE 127
IW R HD VN + W+ + L G DGA+ + W+
Sbjct: 287 RIWDIRAAPSKACMLTTATAHDGDVNVISWSRRE--PFLLSGGDDGALKI--------WD 336
Query: 128 VKKINNAHTIGCNAVSWAPAVVPGSLID-HPSGQKPNYIKRFASGGCDNLIKLW 180
+++ + G ++ V P + ++ HP FA+ G D+ I W
Sbjct: 337 LRQFKS----GSPVATFKQHVAPVTSVEWHPQDSGV-----FAASGADHQITQW 381
Score = 38.1 bits (87), Expect = 0.010
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 12 TRLATCSSDRSVKIFDVRNGGQ--ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 69
T A+CS+D S++I+D+R ++ H+G V ++W+ L S D +
Sbjct: 275 TVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVISWSR--REPFLLSGGDDGAL 332
Query: 70 IIW---REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGS 110
IW + ++G+ + + H + V SV W P D G+ A G+
Sbjct: 333 KIWDLRQFKSGSPVATFKQ--HVAPVTSVEWHPQDSGVFAASGA 374
>gi|223029510 echinoderm microtubule associated protein like 4
isoform b [Homo sapiens]
Length = 923
Score = 52.8 bits (125), Expect = 4e-07
Identities = 56/247 (22%), Positives = 98/247 (39%), Gaps = 47/247 (19%)
Query: 38 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR--EENGTWEKSHEHAGHDSSVNSV 95
+++GH +W +A HP + ++L +C+ DR+V +W E W + + GH
Sbjct: 529 EVQGHTDELWGLA-THP-FKDLLLTCAQDRQVCLWNSMEHRLEWTRLVDEPGH------- 579
Query: 96 CWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID 155
C H G ++A G+ G +L E + + + HT G +S + G+ +
Sbjct: 580 CADFHPSGTVVAIGTHSGRWFVL------DAETRDLVSIHTDGNEQLSVMRYSIDGTFL- 632
Query: 156 HPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPT 214
A G DN I L+ E+G ++ + HS ++ + W+P
Sbjct: 633 -------------AVGSHDNFIYLYVVSENGRKYSRYGRCTGHSSYITHLDWSPD----N 675
Query: 215 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL 274
I S S D + W + KL+ +D + W+ +L G +
Sbjct: 676 KYIMSNSGDYEILYWDIPNGC------KLIRNRSDCK-DIDWTTYTCVL----GFQVFGV 724
Query: 275 WKESVDG 281
W E DG
Sbjct: 725 WPEGSDG 731
>gi|19923497 echinoderm microtubule associated protein like 4
isoform a [Homo sapiens]
Length = 981
Score = 52.8 bits (125), Expect = 4e-07
Identities = 56/247 (22%), Positives = 98/247 (39%), Gaps = 47/247 (19%)
Query: 38 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR--EENGTWEKSHEHAGHDSSVNSV 95
+++GH +W +A HP + ++L +C+ DR+V +W E W + + GH
Sbjct: 587 EVQGHTDELWGLA-THP-FKDLLLTCAQDRQVCLWNSMEHRLEWTRLVDEPGH------- 637
Query: 96 CWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID 155
C H G ++A G+ G +L E + + + HT G +S + G+ +
Sbjct: 638 CADFHPSGTVVAIGTHSGRWFVL------DAETRDLVSIHTDGNEQLSVMRYSIDGTFL- 690
Query: 156 HPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPT 214
A G DN I L+ E+G ++ + HS ++ + W+P
Sbjct: 691 -------------AVGSHDNFIYLYVVSENGRKYSRYGRCTGHSSYITHLDWSPD----N 733
Query: 215 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL 274
I S S D + W + KL+ +D + W+ +L G +
Sbjct: 734 KYIMSNSGDYEILYWDIPNGC------KLIRNRSDCK-DIDWTTYTCVL----GFQVFGV 782
Query: 275 WKESVDG 281
W E DG
Sbjct: 783 WPEGSDG 789
>gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo
sapiens]
Length = 514
Score = 52.8 bits (125), Expect = 4e-07
Identities = 73/263 (27%), Positives = 102/263 (38%), Gaps = 52/263 (19%)
Query: 39 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR-EENGTWEKSH-------EHAGHD- 89
LRGHE V+ AW +P+ ++LAS S D IW EN T + G D
Sbjct: 165 LRGHESEVFICAW-NPV-SDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDV 222
Query: 90 ---SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 146
V S+ W + G +LA GS DG + T G N A T+G +
Sbjct: 223 PSNKDVTSLDW--NSEGTLLATGSYDGFARIWTKDG---------NLASTLGQH------ 265
Query: 147 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 206
G + +K N+I S G D +W + G+ K Q+ HS DV W
Sbjct: 266 ---KGPIFALKWNKKGNFI---LSAGVDKTTIIW-DAHTGEAK--QQFPFHSAPALDVDW 316
Query: 207 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 266
+ +T ASCS D + I C K + V + W T N+LA
Sbjct: 317 QSN-----NTFASCSTD--MCIHVCKLGQDR--PIKTFQGHTNEVNAIKWDPTGNLLASC 367
Query: 267 GGDNKVTLWKESVDGQWVCISDV 289
D + +W D C+ D+
Sbjct: 368 SDDMTLKIWSMKQDN---CVHDL 387
Score = 50.8 bits (120), Expect = 1e-06
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 14 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 73
LA+ S D +V+++DV G I I L H+ PV+ VA++ G LAS S+D+ V IW
Sbjct: 415 LASASFDSTVRLWDVDRG--ICIHTLTKHQEPVYSVAFSPD--GRYLASGSFDKCVHIWN 470
Query: 74 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 118
+ G S+ G + VCW + G + +SDG++ +L
Sbjct: 471 TQTGALVHSYRGTG---GIFEVCW--NAAGDKVGASASDGSVCVL 510
Score = 43.9 bits (102), Expect = 2e-04
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 37/178 (20%)
Query: 15 ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW-- 72
A+CS+D + + + G I +GH V + W GN+LASCS D + IW
Sbjct: 323 ASCSTDMCIHVCKL--GQDRPIKTFQGHTNEVNAIKWDPT--GNLLASCSDDMTLKIWSM 378
Query: 73 REENGTWEKSHEHAGHDSSVNSVCWAPHDYG-------LILACGSSDGAISLLTYTGEGQ 125
+++N H+ H+ + ++ W+P G L+LA S D + L
Sbjct: 379 KQDNCV----HDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRL-------- 426
Query: 126 WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE 183
W+V + HT+ P S+ P G + ASG D + +W +
Sbjct: 427 WDVDRGICIHTL---TKHQEPVY---SVAFSPDG------RYLASGSFDKCVHIWNTQ 472
Score = 43.1 bits (100), Expect = 3e-04
Identities = 69/291 (23%), Positives = 113/291 (38%), Gaps = 56/291 (19%)
Query: 15 ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 74
+T S + V +R GGQ D+ ++ V + W G +LA+ SYD IW +
Sbjct: 202 STSGSTQLVLRHCIREGGQ----DVPSNKD-VTSLDWNSE--GTLLATGSYDGFARIWTK 254
Query: 75 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA 134
+ +H G + ++ W IL+ G I +TGE + +
Sbjct: 255 DGNLASTLGQHKG---PIFALKWNKKG-NFILSAGVDKTTIIWDAHTGEAKQQFP----F 306
Query: 135 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL 194
H+ V W Q N ++ C ++ KL GQ + +
Sbjct: 307 HSAPALDVDW---------------QSNNTFASCSTDMCIHVCKL------GQDRPIKTF 345
Query: 195 EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHV 254
+ H++ V + W P+ L +ASCS D + IW+ + L N ++ +
Sbjct: 346 QGHTNEVNAIKWDPTGNL----LASCSDDMTLKIWSMKQDN----CVHDLQAHNKEIYTI 397
Query: 255 SWSIT--------ANILAVSGG-DNKVTLWKESVDGQWVCISDVNKGQGSV 296
WS T AN++ S D+ V LW VD + +CI + K Q V
Sbjct: 398 KWSPTGPGTNNPNANLMLASASFDSTVRLW--DVD-RGICIHTLTKHQEPV 445
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 52.8 bits (125), Expect = 4e-07
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 28/200 (14%)
Query: 2 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILA 61
+ + +++ G L T S D K+FD+RN + L RGH+ VAW HP++ + A
Sbjct: 291 VMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQV-FRGHKKEATAVAW-HPVHEGLFA 348
Query: 62 SCSYDRKVIIW----REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 117
S D ++ W +E G E +HE + S+ W H G IL GS+D
Sbjct: 349 SGGSDGSLLFWHVGVEKEVGGMEMAHE-----GMIWSLAW--HPLGHILCSGSNDHTSKF 401
Query: 118 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID--HPSGQKPNYIKRFASGGCDN 175
T G K+ + + + ++PG D +PN + G
Sbjct: 402 WTRNRPGD----KMRDRYNLN---------LLPGMSEDGVEYDDLEPNSLAVIPGMGIPE 448
Query: 176 LIKLWKEEEDGQWKEEQKLE 195
+KL E+E E ++E
Sbjct: 449 QLKLAMEQEQMGKDESNEIE 468
Score = 39.7 bits (91), Expect = 0.003
Identities = 58/227 (25%), Positives = 77/227 (33%), Gaps = 65/227 (28%)
Query: 2 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILA 61
I +A + ATCS D +V+I+D + I LRGH V V W HP G +++
Sbjct: 205 IREASFSPTDNKFATCSDDGTVRIWDFLRCHEERI--LRGHGADVKCVDW-HPTKGLVVS 261
Query: 62 SCSYDRKVI-IWREE----------------------NGTW------------------- 79
++ I W + NG W
Sbjct: 262 GSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLK 321
Query: 80 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGC 139
E+ GH +V W P GL A G SDG SLL + + EV + AH
Sbjct: 322 EELQVFRGHKKEATAVAWHPVHEGL-FASGGSDG--SLLFWHVGVEKEVGGMEMAH---- 374
Query: 140 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG 186
+ W SL HP G SG D+ K W G
Sbjct: 375 EGMIW-------SLAWHPLGH------ILCSGSNDHTSKFWTRNRPG 408
Score = 34.7 bits (78), Expect = 0.11
Identities = 51/228 (22%), Positives = 85/228 (37%), Gaps = 38/228 (16%)
Query: 58 NILASCSYDRKVIIWREENGTWEKSHEHA---GHDSSVNSVCWAPHDYGLILACGSSDGA 114
N A+CS D V IW + + HE GH + V V W P GL+++ GS D
Sbjct: 215 NKFATCSDDGTVRIW-----DFLRCHEERILRGHGADVKCVDWHPTK-GLVVS-GSKDSQ 267
Query: 115 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD 174
+ W+ K + T+ + ++++ N++ + D
Sbjct: 268 QPIKF------WDPKTGQSLATLHAHK---------NTVMEVKLNLNGNWL---LTASRD 309
Query: 175 NLIKLWKEEEDGQWKEE-QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 233
+L KL+ + KEE Q H VAW P + AS DG + W
Sbjct: 310 HLCKLF---DIRNLKEELQVFRGHKKEATAVAWHP---VHEGLFASGGSDGSLLFWHVG- 362
Query: 234 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG 281
++ H+ ++W ++W +IL D+ W + G
Sbjct: 363 VEKEVGGMEMAHE--GMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPG 408
>gi|89026256 PREDICTED: similar to actin related protein 2/3 complex
subunit 1B [Homo sapiens]
Length = 370
Score = 52.4 bits (124), Expect = 5e-07
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 12 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 71
T++A C ++ V I++ + +L+ H G V + WA N + +C DR +
Sbjct: 19 TQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDWAPE--SNRIVTCGTDRNAYV 76
Query: 72 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 130
W + TW+ + + + V WAP++ A GS IS+ + E W V K
Sbjct: 77 WTLKGRTWKPTLVILRINRAARCVRWAPNENK--FAVGSGSRVISICYFEQENDWWVCK 133
Score = 50.1 bits (118), Expect = 3e-06
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 182 EEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSP 241
E+ +W + +L+ H+ V + WAP ++ I +C D ++WT TW P
Sbjct: 34 EKSGAKWTKVHELKEHNGQVTGIDWAPE----SNRIVTCGTDRNAYVWT---LKGRTWKP 86
Query: 242 KL-LHKFNDVVWHVSWSITANILAVSGGDNKVTL-WKESVDGQWVC 285
L + + N V W+ N AV G +++ + E + WVC
Sbjct: 87 TLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVC 132
Score = 40.4 bits (93), Expect = 0.002
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 24/131 (18%)
Query: 60 LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI--SL 117
+A C + +V I+ + W K HE H+ V + WAP + I+ CG+ A +L
Sbjct: 21 IAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDWAP-ESNRIVTCGTDRNAYVWTL 79
Query: 118 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLI 177
T + + +IN A V WAP +FA G +I
Sbjct: 80 KGRTWKPTLVILRINRA----ARCVRWAPNE-----------------NKFAVGSGSRVI 118
Query: 178 KLWKEEEDGQW 188
+ E++ W
Sbjct: 119 SICYFEQENDW 129
>gi|5031601 actin related protein 2/3 complex subunit 1B [Homo
sapiens]
Length = 372
Score = 52.4 bits (124), Expect = 5e-07
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 12 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 71
T++A C ++ V I++ + +L+ H G V + WA N + +C DR +
Sbjct: 21 TQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDWAPE--SNRIVTCGTDRNAYV 78
Query: 72 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 130
W + TW+ + + + V WAP++ A GS IS+ + E W V K
Sbjct: 79 WTLKGRTWKPTLVILRINRAARCVRWAPNENK--FAVGSGSRVISICYFEQENDWWVCK 135
Score = 50.1 bits (118), Expect = 3e-06
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 182 EEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSP 241
E+ +W + +L+ H+ V + WAP ++ I +C D ++WT TW P
Sbjct: 36 EKSGAKWTKVHELKEHNGQVTGIDWAPE----SNRIVTCGTDRNAYVWT---LKGRTWKP 88
Query: 242 KL-LHKFNDVVWHVSWSITANILAVSGGDNKVTL-WKESVDGQWVC 285
L + + N V W+ N AV G +++ + E + WVC
Sbjct: 89 TLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVC 134
Score = 40.4 bits (93), Expect = 0.002
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 24/131 (18%)
Query: 60 LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI--SL 117
+A C + +V I+ + W K HE H+ V + WAP + I+ CG+ A +L
Sbjct: 23 IAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDWAP-ESNRIVTCGTDRNAYVWTL 81
Query: 118 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLI 177
T + + +IN A V WAP +FA G +I
Sbjct: 82 KGRTWKPTLVILRINRA----ARCVRWAPNE-----------------NKFAVGSGSRVI 120
Query: 178 KLWKEEEDGQW 188
+ E++ W
Sbjct: 121 SICYFEQENDW 131
>gi|213021190 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 52.0 bits (123), Expect = 7e-07
Identities = 74/265 (27%), Positives = 103/265 (38%), Gaps = 56/265 (21%)
Query: 39 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR-EENGTWEKSH-------EHAGHD- 89
LRGHE V+ AW +P+ ++LAS S D IW EN + GHD
Sbjct: 177 LRGHESEVFICAW-NPV-SDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV 234
Query: 90 ---SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 146
V S+ W + G +LA GS DG + T G N A T+G +
Sbjct: 235 PSNKDVTSLDW--NTNGTLLATGSYDGFARIWTEDG---------NLASTLGQH------ 277
Query: 147 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 206
G + +K NYI S G D +W + G+ K Q+ HS DV W
Sbjct: 278 ---KGPIFALKWNRKGNYI---LSAGVDKTTIIW-DAHTGEAK--QQFPFHSAPALDVDW 328
Query: 207 APSIGLPTSTIASCSQDGRVFIWT--CDDASSNTWSPKLLHKFNDVVWHVSWSITANILA 264
+ +T ASCS D + + CD K + V + W + +LA
Sbjct: 329 QNN-----TTFASCSTDMCIHVCRLGCDR------PVKTFQGHTNEVNAIKWDPSGMLLA 377
Query: 265 VSGGDNKVTLWKESVDGQWVCISDV 289
D + +W Q VCI D+
Sbjct: 378 SCSDDMTLKIWSMK---QEVCIHDL 399
Score = 49.3 bits (116), Expect = 4e-06
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 14 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 73
LA+ S D +V+++D+ G + L H+ PV+ VA++ G LAS S+D+ V IW
Sbjct: 427 LASASFDSTVRLWDIERG--VCTHTLTKHQEPVYSVAFSPD--GKYLASGSFDKCVHIWN 482
Query: 74 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 118
++G S+ G + VCW + G + +SDG++ +L
Sbjct: 483 TQSGNLVHSYRGTG---GIFEVCW--NARGDKVGASASDGSVCVL 522
Score = 38.9 bits (89), Expect = 0.006
Identities = 73/318 (22%), Positives = 116/318 (36%), Gaps = 88/318 (27%)
Query: 14 LATCSSDRSVKIFDVR---NGGQILIADLR------GHEGP----VWQVAWAHPMYGNIL 60
LA+ S D + +I+++ NGG + LR GH+ P V + W G +L
Sbjct: 196 LASGSGDSTARIWNLNENSNGGSTQLV-LRHCIREGGHDVPSNKDVTSLDWN--TNGTLL 252
Query: 61 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 120
A+ SYD IW E+ +H G + ++ W IL+ G I +
Sbjct: 253 ATGSYDGFARIWTEDGNLASTLGQHKG---PIFALKW-NRKGNYILSAGVDKTTIIWDAH 308
Query: 121 TGEGQ--------------WEVK-----------------------KINNAHTIGCNAVS 143
TGE + W+ K HT NA+
Sbjct: 309 TGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIK 368
Query: 144 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD 203
W P+ G L+ AS D +K+W +++ + L+AH+ +
Sbjct: 369 WDPS---GMLL--------------ASCSDDMTLKIWSMKQEVCIHD---LQAHNKEIYT 408
Query: 204 VAWAPSIGLPTST------IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWS 257
+ W+P+ G TS +AS S D V +W + L K + V+ V++S
Sbjct: 409 IKWSPT-GPATSNPNSNIMLASASFDSTVRLWDIERGVCT----HTLTKHQEPVYSVAFS 463
Query: 258 ITANILAVSGGDNKVTLW 275
LA D V +W
Sbjct: 464 PDGKYLASGSFDKCVHIW 481
>gi|213021188 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 52.0 bits (123), Expect = 7e-07
Identities = 74/265 (27%), Positives = 103/265 (38%), Gaps = 56/265 (21%)
Query: 39 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR-EENGTWEKSH-------EHAGHD- 89
LRGHE V+ AW +P+ ++LAS S D IW EN + GHD
Sbjct: 177 LRGHESEVFICAW-NPV-SDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV 234
Query: 90 ---SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 146
V S+ W + G +LA GS DG + T G N A T+G +
Sbjct: 235 PSNKDVTSLDW--NTNGTLLATGSYDGFARIWTEDG---------NLASTLGQH------ 277
Query: 147 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 206
G + +K NYI S G D +W + G+ K Q+ HS DV W
Sbjct: 278 ---KGPIFALKWNRKGNYI---LSAGVDKTTIIW-DAHTGEAK--QQFPFHSAPALDVDW 328
Query: 207 APSIGLPTSTIASCSQDGRVFIWT--CDDASSNTWSPKLLHKFNDVVWHVSWSITANILA 264
+ +T ASCS D + + CD K + V + W + +LA
Sbjct: 329 QNN-----TTFASCSTDMCIHVCRLGCDR------PVKTFQGHTNEVNAIKWDPSGMLLA 377
Query: 265 VSGGDNKVTLWKESVDGQWVCISDV 289
D + +W Q VCI D+
Sbjct: 378 SCSDDMTLKIWSMK---QEVCIHDL 399
Score = 49.3 bits (116), Expect = 4e-06
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 14 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 73
LA+ S D +V+++D+ G + L H+ PV+ VA++ G LAS S+D+ V IW
Sbjct: 427 LASASFDSTVRLWDIERG--VCTHTLTKHQEPVYSVAFSPD--GKYLASGSFDKCVHIWN 482
Query: 74 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 118
++G S+ G + VCW + G + +SDG++ +L
Sbjct: 483 TQSGNLVHSYRGTG---GIFEVCW--NARGDKVGASASDGSVCVL 522
Score = 38.9 bits (89), Expect = 0.006
Identities = 73/318 (22%), Positives = 116/318 (36%), Gaps = 88/318 (27%)
Query: 14 LATCSSDRSVKIFDVR---NGGQILIADLR------GHEGP----VWQVAWAHPMYGNIL 60
LA+ S D + +I+++ NGG + LR GH+ P V + W G +L
Sbjct: 196 LASGSGDSTARIWNLNENSNGGSTQLV-LRHCIREGGHDVPSNKDVTSLDWN--TNGTLL 252
Query: 61 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 120
A+ SYD IW E+ +H G + ++ W IL+ G I +
Sbjct: 253 ATGSYDGFARIWTEDGNLASTLGQHKG---PIFALKW-NRKGNYILSAGVDKTTIIWDAH 308
Query: 121 TGEGQ--------------WEVK-----------------------KINNAHTIGCNAVS 143
TGE + W+ K HT NA+
Sbjct: 309 TGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIK 368
Query: 144 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD 203
W P+ G L+ AS D +K+W +++ + L+AH+ +
Sbjct: 369 WDPS---GMLL--------------ASCSDDMTLKIWSMKQEVCIHD---LQAHNKEIYT 408
Query: 204 VAWAPSIGLPTST------IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWS 257
+ W+P+ G TS +AS S D V +W + L K + V+ V++S
Sbjct: 409 IKWSPT-GPATSNPNSNIMLASASFDSTVRLWDIERGVCT----HTLTKHQEPVYSVAFS 463
Query: 258 ITANILAVSGGDNKVTLW 275
LA D V +W
Sbjct: 464 PDGKYLASGSFDKCVHIW 481
>gi|213021186 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 52.0 bits (123), Expect = 7e-07
Identities = 74/265 (27%), Positives = 103/265 (38%), Gaps = 56/265 (21%)
Query: 39 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR-EENGTWEKSH-------EHAGHD- 89
LRGHE V+ AW +P+ ++LAS S D IW EN + GHD
Sbjct: 228 LRGHESEVFICAW-NPV-SDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV 285
Query: 90 ---SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 146
V S+ W + G +LA GS DG + T G N A T+G +
Sbjct: 286 PSNKDVTSLDW--NTNGTLLATGSYDGFARIWTEDG---------NLASTLGQH------ 328
Query: 147 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 206
G + +K NYI S G D +W + G+ K Q+ HS DV W
Sbjct: 329 ---KGPIFALKWNRKGNYI---LSAGVDKTTIIW-DAHTGEAK--QQFPFHSAPALDVDW 379
Query: 207 APSIGLPTSTIASCSQDGRVFIWT--CDDASSNTWSPKLLHKFNDVVWHVSWSITANILA 264
+ +T ASCS D + + CD K + V + W + +LA
Sbjct: 380 QNN-----TTFASCSTDMCIHVCRLGCDR------PVKTFQGHTNEVNAIKWDPSGMLLA 428
Query: 265 VSGGDNKVTLWKESVDGQWVCISDV 289
D + +W Q VCI D+
Sbjct: 429 SCSDDMTLKIWSMK---QEVCIHDL 450
Score = 49.3 bits (116), Expect = 4e-06
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 14 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 73
LA+ S D +V+++D+ G + L H+ PV+ VA++ G LAS S+D+ V IW
Sbjct: 478 LASASFDSTVRLWDIERG--VCTHTLTKHQEPVYSVAFSPD--GKYLASGSFDKCVHIWN 533
Query: 74 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 118
++G S+ G + VCW + G + +SDG++ +L
Sbjct: 534 TQSGNLVHSYRGTG---GIFEVCW--NARGDKVGASASDGSVCVL 573
Score = 38.9 bits (89), Expect = 0.006
Identities = 73/318 (22%), Positives = 116/318 (36%), Gaps = 88/318 (27%)
Query: 14 LATCSSDRSVKIFDVR---NGGQILIADLR------GHEGP----VWQVAWAHPMYGNIL 60
LA+ S D + +I+++ NGG + LR GH+ P V + W G +L
Sbjct: 247 LASGSGDSTARIWNLNENSNGGSTQLV-LRHCIREGGHDVPSNKDVTSLDWN--TNGTLL 303
Query: 61 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 120
A+ SYD IW E+ +H G + ++ W IL+ G I +
Sbjct: 304 ATGSYDGFARIWTEDGNLASTLGQHKG---PIFALKW-NRKGNYILSAGVDKTTIIWDAH 359
Query: 121 TGEGQ--------------WEVK-----------------------KINNAHTIGCNAVS 143
TGE + W+ K HT NA+
Sbjct: 360 TGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIK 419
Query: 144 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD 203
W P+ G L+ AS D +K+W +++ + L+AH+ +
Sbjct: 420 WDPS---GMLL--------------ASCSDDMTLKIWSMKQEVCIHD---LQAHNKEIYT 459
Query: 204 VAWAPSIGLPTST------IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWS 257
+ W+P+ G TS +AS S D V +W + L K + V+ V++S
Sbjct: 460 IKWSPT-GPATSNPNSNIMLASASFDSTVRLWDIERGVCT----HTLTKHQEPVYSVAFS 514
Query: 258 ITANILAVSGGDNKVTLW 275
LA D V +W
Sbjct: 515 PDGKYLASGSFDKCVHIW 532
>gi|5032159 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 52.0 bits (123), Expect = 7e-07
Identities = 74/265 (27%), Positives = 103/265 (38%), Gaps = 56/265 (21%)
Query: 39 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR-EENGTWEKSH-------EHAGHD- 89
LRGHE V+ AW +P+ ++LAS S D IW EN + GHD
Sbjct: 228 LRGHESEVFICAW-NPV-SDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV 285
Query: 90 ---SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 146
V S+ W + G +LA GS DG + T G N A T+G +
Sbjct: 286 PSNKDVTSLDW--NTNGTLLATGSYDGFARIWTEDG---------NLASTLGQH------ 328
Query: 147 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 206
G + +K NYI S G D +W + G+ K Q+ HS DV W
Sbjct: 329 ---KGPIFALKWNRKGNYI---LSAGVDKTTIIW-DAHTGEAK--QQFPFHSAPALDVDW 379
Query: 207 APSIGLPTSTIASCSQDGRVFIWT--CDDASSNTWSPKLLHKFNDVVWHVSWSITANILA 264
+ +T ASCS D + + CD K + V + W + +LA
Sbjct: 380 QNN-----TTFASCSTDMCIHVCRLGCDR------PVKTFQGHTNEVNAIKWDPSGMLLA 428
Query: 265 VSGGDNKVTLWKESVDGQWVCISDV 289
D + +W Q VCI D+
Sbjct: 429 SCSDDMTLKIWSMK---QEVCIHDL 450
Score = 49.3 bits (116), Expect = 4e-06
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 14 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 73
LA+ S D +V+++D+ G + L H+ PV+ VA++ G LAS S+D+ V IW
Sbjct: 478 LASASFDSTVRLWDIERG--VCTHTLTKHQEPVYSVAFSPD--GKYLASGSFDKCVHIWN 533
Query: 74 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 118
++G S+ G + VCW + G + +SDG++ +L
Sbjct: 534 TQSGNLVHSYRGTG---GIFEVCW--NARGDKVGASASDGSVCVL 573
Score = 38.9 bits (89), Expect = 0.006
Identities = 73/318 (22%), Positives = 116/318 (36%), Gaps = 88/318 (27%)
Query: 14 LATCSSDRSVKIFDVR---NGGQILIADLR------GHEGP----VWQVAWAHPMYGNIL 60
LA+ S D + +I+++ NGG + LR GH+ P V + W G +L
Sbjct: 247 LASGSGDSTARIWNLNENSNGGSTQLV-LRHCIREGGHDVPSNKDVTSLDWN--TNGTLL 303
Query: 61 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 120
A+ SYD IW E+ +H G + ++ W IL+ G I +
Sbjct: 304 ATGSYDGFARIWTEDGNLASTLGQHKG---PIFALKW-NRKGNYILSAGVDKTTIIWDAH 359
Query: 121 TGEGQ--------------WEVK-----------------------KINNAHTIGCNAVS 143
TGE + W+ K HT NA+
Sbjct: 360 TGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIK 419
Query: 144 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD 203
W P+ G L+ AS D +K+W +++ + L+AH+ +
Sbjct: 420 WDPS---GMLL--------------ASCSDDMTLKIWSMKQEVCIHD---LQAHNKEIYT 459
Query: 204 VAWAPSIGLPTST------IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWS 257
+ W+P+ G TS +AS S D V +W + L K + V+ V++S
Sbjct: 460 IKWSPT-GPATSNPNSNIMLASASFDSTVRLWDIERGVCT----HTLTKHQEPVYSVAFS 514
Query: 258 ITANILAVSGGDNKVTLW 275
LA D V +W
Sbjct: 515 PDGKYLASGSFDKCVHIW 532
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,785,675
Number of Sequences: 37866
Number of extensions: 643257
Number of successful extensions: 2569
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 186
Number of HSP's that attempted gapping in prelim test: 1813
Number of HSP's gapped (non-prelim): 625
length of query: 308
length of database: 18,247,518
effective HSP length: 102
effective length of query: 206
effective length of database: 14,385,186
effective search space: 2963348316
effective search space used: 2963348316
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.