Guide to the Human Genome
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Name: HSD17B13 Sequence: fasta or formatted (300aa) NCBI GI: 210032110
Description:

hydroxysteroid (17-beta) dehydrogenase 13 isoform A

Referenced in:

Alcohol and Aldehyde Dehydrogenases
Steroid Hormones

Other entries for this name:
alt prot [264aa] hydroxysteroid (17-beta) dehydrogenase 13 isoform B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         17           2
 C cysteine            2.0          6           1
 D aspartate           2.3          7           1
 E glutamate           6.7         20           2
 F phenylalanine       4.3         13           2
 G glycine             6.7         20           1
 H histidine           2.7          8           1
 I isoleucine          9.7         29           2
 K lysine              6.7         20           2
 L leucine            10.0         30           4
 M methionine          2.0          6           2
 N asparagine          4.7         14           2
 P proline             3.3         10           1
 Q glutamine           2.7          8           1
 R arginine            5.0         15           2
 S serine              5.7         17           2
 T threonine           7.0         21           2
 V valine              9.0         27           2
 W tryptophan          1.0          3           1
 Y tyrosine            3.0          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hydroxysteroid (17-beta) dehydrogenase 13 isoform A... 
HSD17B13              0.841   hydroxysteroid (17-beta) dehydrogenase 13 isoform B...
HSD17B11              0.638   estradiol 17-beta-dehydrogenase 11 
SDR16C5               0.362   epidermal retinal dehydrogenase 2 
SDR16C6               0.334   short chain dehydrogenase/reductase family 16C, mem...
RDH10                 0.327   retinol dehydrogenase 10 
DHRS3                 0.266   dehydrogenase/reductase (SDR family) member 3 
DHRS7                 0.121   dehydrogenase/reductase (SDR family) member 7 
DHRS11                0.117   short-chain dehydrogenase/reductase 
DHRS7B                0.115   dehydrogenase/reductase (SDR family) member 7B [Homo...
CBR4                  0.100   carbonic reductase 4 
RDH8                  0.098   retinol dehydrogenase 8 (all-trans) 
HSD11B1               0.096   11-beta-hydroxysteroid dehydrogenase 1 
HSD11B1               0.096   11-beta-hydroxysteroid dehydrogenase 1 
DHRS4                 0.096   peroxisomal short-chain alcohol dehydrogenase 
BDH2                  0.087   3-hydroxybutyrate dehydrogenase, type 2 
HSDL1                 0.084   hydroxysteroid dehydrogenase like 1 isoform a [Homo...
RDH12                 0.082   retinol dehydrogenase 12 
HSD11B1L              0.082   short-chain dehydrogenase/reductase 10 isoform b [Ho...
DHRS7C                0.080   dehydrogenase/reductase (SDR family) member 7C [Hom...
HSD11B1L              0.080   short-chain dehydrogenase/reductase 10 isoform e [Ho...
DHRS4L2               0.080   dehydrogenase/reductase (SDR family) member 4 like ...
RDH13                 0.079   retinol dehydrogenase 13 isoform 1 
HSD17B12              0.077   hydroxysteroid (17-beta) dehydrogenase 12 
HSD17B4               0.073   hydroxysteroid (17-beta) dehydrogenase 4 
HPGD                  0.073   hydroxyprostaglandin dehydrogenase 15-(NAD) isoform ...
HSD17B14              0.073   dehydrogenase/reductase (SDR family) member 10 [Homo...
HSD17B6               0.070   hydroxysteroid (17-beta) dehydrogenase 6 
HSD17B8               0.070   estradiol 17 beta-dehydrogenase 8 
KDSR                  0.066   3-ketodihydrosphingosine reductase precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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