Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RDH13 Sequence: fasta or formatted (331aa) NCBI GI: 225579078
Description:

retinol dehydrogenase 13 isoform 1

Referenced in:

Alcohol and Aldehyde Dehydrogenases

Other entries for this name:
alt prot [260aa] retinol dehydrogenase 13 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         39           3
 C cysteine            1.5          5           1
 D aspartate           3.9         13           2
 E glutamate           6.9         23           4
 F phenylalanine       2.7          9           1
 G glycine             7.9         26           2
 H histidine           3.3         11           2
 I isoleucine          5.1         17           2
 K lysine              5.4         18           1
 L leucine            12.4         41           3
 M methionine          1.2          4           1
 N asparagine          3.6         12           2
 P proline             4.2         14           1
 Q glutamine           2.4          8           1
 R arginine            6.0         20           2
 S serine              6.0         20           2
 T threonine           6.3         21           2
 V valine              6.0         20           1
 W tryptophan          1.2          4           1
 Y tyrosine            1.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinol dehydrogenase 13 isoform 1 
RDH13                 0.783   retinol dehydrogenase 13 isoform 2 
RDH12                 0.413   retinol dehydrogenase 12 
RDH11                 0.411   retinol dehydrogenase 11 
RDH14                 0.402   retinol dehydrogenase 14 (all-trans and 9-cis) [Homo...
DHRS13                0.329   dehydrogenase/reductase (SDR family) member 13 [Hom...
DHRSX                 0.280   dehydrogenase/reductase (SDR family) X-linked [Homo...
WWOX                  0.256   WW domain-containing oxidoreductase isoform 1 
HSD17B11              0.081   estradiol 17-beta-dehydrogenase 11 
DHRS12                0.078   dehydrogenase/reductase (SDR family) member 12 isofo...
DHRS12                0.071   dehydrogenase/reductase (SDR family) member 12 isofo...
HPGD                  0.071   hydroxyprostaglandin dehydrogenase 15-(NAD) isoform ...
HSD17B13              0.071   hydroxysteroid (17-beta) dehydrogenase 13 isoform A...
RDH5                  0.068   retinol dehydrogenase 5 (11-cis and 9-cis) 
HSD17B7               0.066   hydroxysteroid (17-beta) dehydrogenase 7 
HSD17B6               0.066   hydroxysteroid (17-beta) dehydrogenase 6 
BDH2                  0.066   3-hydroxybutyrate dehydrogenase, type 2 
SDR9C7                0.063   short chain dehydrogenase/reductase family 9C, membe...
HSDL2                 0.063   hydroxysteroid dehydrogenase like 2 
HSD17B14              0.062   dehydrogenase/reductase (SDR family) member 10 [Homo...
KDSR                  0.062   3-ketodihydrosphingosine reductase precursor 
CBR4                  0.059   carbonic reductase 4 
CBR3                  0.059   carbonyl reductase 3 
SDR16C5               0.059   epidermal retinal dehydrogenase 2 
DCXR                  0.059   dicarbonyl/L-xylulose reductase 
DHRS2                 0.057   dehydrogenase/reductase member 2 isoform 1 
RDH16                 0.055   retinol dehydrogenase 16 
DHRS2                 0.055   dehydrogenase/reductase member 2 isoform 2 
DHRS4                 0.055   peroxisomal short-chain alcohol dehydrogenase 
CBR1                  0.054   carbonyl reductase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press