Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KDSR Sequence: fasta or formatted (332aa) NCBI GI: 4503817
Description:

3-ketodihydrosphingosine reductase precursor

Referenced in:

Alcohol and Aldehyde Dehydrogenases
Sphingomyelin, Ceramides, and Glycolipids

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         29           3
 C cysteine            2.1          7           1
 D aspartate           3.6         12           1
 E glutamate           6.0         20           2
 F phenylalanine       4.2         14           1
 G glycine             6.9         23           2
 H histidine           0.6          2           1
 I isoleucine          6.0         20           1
 K lysine              5.7         19           2
 L leucine             9.6         32           3
 M methionine          3.9         13           2
 N asparagine          3.3         11           1
 P proline             3.9         13           2
 Q glutamine           4.8         16           2
 R arginine            3.9         13           2
 S serine              7.8         26           2
 T threonine           5.7         19           2
 V valine              9.6         32           3
 W tryptophan          0.0          0           0
 Y tyrosine            3.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   3-ketodihydrosphingosine reductase precursor 
DHRS7                 0.108   dehydrogenase/reductase (SDR family) member 7 
DHRS7B                0.106   dehydrogenase/reductase (SDR family) member 7B [Homo...
DHRS7C                0.098   dehydrogenase/reductase (SDR family) member 7C [Hom...
RDH8                  0.095   retinol dehydrogenase 8 (all-trans) 
HSD17B4               0.092   hydroxysteroid (17-beta) dehydrogenase 4 
CBR4                  0.090   carbonic reductase 4 
SDR16C5               0.087   epidermal retinal dehydrogenase 2 
HSD11B1               0.082   11-beta-hydroxysteroid dehydrogenase 1 
HSD11B1               0.082   11-beta-hydroxysteroid dehydrogenase 1 
RDH10                 0.077   retinol dehydrogenase 10 
RDH11                 0.073   retinol dehydrogenase 11 
HSD17B10              0.073   hydroxysteroid (17-beta) dehydrogenase 10 isoform 1 [...
SDR16C6               0.071   short chain dehydrogenase/reductase family 16C, mem...
HSD17B12              0.071   hydroxysteroid (17-beta) dehydrogenase 12 
HSD17B14              0.069   dehydrogenase/reductase (SDR family) member 10 [Homo...
HSD17B10              0.069   hydroxysteroid (17-beta) dehydrogenase 10 isoform 2 ...
DHRS4                 0.068   peroxisomal short-chain alcohol dehydrogenase 
DCXR                  0.068   dicarbonyl/L-xylulose reductase 
BDH1                  0.068   3-hydroxybutyrate dehydrogenase, type 1 precursor [H...
BDH1                  0.068   3-hydroxybutyrate dehydrogenase, type 1 precursor [H...
BDH1                  0.068   3-hydroxybutyrate dehydrogenase, type 1 precursor [H...
HSDL2                 0.068   hydroxysteroid dehydrogenase like 2 
HSD17B1               0.065   hydroxysteroid (17-beta) dehydrogenase 1 
HSD11B1L              0.065   short-chain dehydrogenase/reductase 10 isoform e [Ho...
PECR                  0.065   peroxisomal trans-2-enoyl-CoA reductase 
HSD11B1L              0.065   short-chain dehydrogenase/reductase 10 isoform b [Ho...
DHRS2                 0.063   dehydrogenase/reductase member 2 isoform 2 
DHRS2                 0.063   dehydrogenase/reductase member 2 isoform 1 
RDH13                 0.063   retinol dehydrogenase 13 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press