Guide to the Human Genome
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Name: RDH12 Sequence: fasta or formatted (316aa) NCBI GI: 186928839
Description:

retinol dehydrogenase 12

Referenced in:

Alcohol and Aldehyde Dehydrogenases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         27           2
 C cysteine            2.5          8           1
 D aspartate           2.2          7           1
 E glutamate           5.7         18           2
 F phenylalanine       4.7         15           2
 G glycine             7.3         23           2
 H histidine           3.5         11           2
 I isoleucine          3.5         11           1
 K lysine              5.7         18           1
 L leucine            12.7         40           3
 M methionine          1.3          4           2
 N asparagine          3.5         11           2
 P proline             2.8          9           1
 Q glutamine           1.9          6           1
 R arginine            7.6         24           1
 S serine              7.9         25           2
 T threonine           6.0         19           2
 V valine              8.9         28           3
 W tryptophan          1.3          4           1
 Y tyrosine            2.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinol dehydrogenase 12 
RDH11                 0.716   retinol dehydrogenase 11 
RDH13                 0.431   retinol dehydrogenase 13 isoform 1 
RDH14                 0.404   retinol dehydrogenase 14 (all-trans and 9-cis) [Homo...
DHRS13                0.358   dehydrogenase/reductase (SDR family) member 13 [Hom...
RDH13                 0.330   retinol dehydrogenase 13 isoform 2 
WWOX                  0.309   WW domain-containing oxidoreductase isoform 1 
DHRSX                 0.287   dehydrogenase/reductase (SDR family) X-linked [Homo...
DHRS12                0.094   dehydrogenase/reductase (SDR family) member 12 isofo...
RDH16                 0.087   retinol dehydrogenase 16 
DHRS12                0.086   dehydrogenase/reductase (SDR family) member 12 isofo...
HSD17B11              0.081   estradiol 17-beta-dehydrogenase 11 
HSD17B13              0.078   hydroxysteroid (17-beta) dehydrogenase 13 isoform A...
HSD17B6               0.074   hydroxysteroid (17-beta) dehydrogenase 6 
DHRS7                 0.073   dehydrogenase/reductase (SDR family) member 7 
SDR9C7                0.071   short chain dehydrogenase/reductase family 9C, membe...
RDH5                  0.068   retinol dehydrogenase 5 (11-cis and 9-cis) 
DHRS9                 0.066   NADP-dependent retinol dehydrogenase/reductase [Homo...
DHRS9                 0.066   NADP-dependent retinol dehydrogenase/reductase [Hom...
DHRS9                 0.066   NADP-dependent retinol dehydrogenase/reductase [Hom...
DHRS9                 0.066   NADP-dependent retinol dehydrogenase/reductase [Homo...
HSD17B14              0.064   dehydrogenase/reductase (SDR family) member 10 [Homo...
KDSR                  0.061   3-ketodihydrosphingosine reductase precursor 
HPGD                  0.061   hydroxyprostaglandin dehydrogenase 15-(NAD) isoform ...
CBR3                  0.061   carbonyl reductase 3 
HSD17B13              0.058   hydroxysteroid (17-beta) dehydrogenase 13 isoform B...
DHRS7B                0.058   dehydrogenase/reductase (SDR family) member 7B [Homo...
HSD17B7               0.056   hydroxysteroid (17-beta) dehydrogenase 7 
CBR1                  0.051   carbonyl reductase 1 
PECR                  0.051   peroxisomal trans-2-enoyl-CoA reductase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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