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Search of human proteins with 209954781
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209954781 neurotrophic factor artemin isoform 1 precursor
[Homo sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 460 e-130
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 460 e-130
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 453 e-128
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 453 e-128
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 418 e-117
gi|4758826 neurturin preproprotein [Homo sapiens] 95 5e-20
gi|4758974 persephin precursor [Homo sapiens] 94 7e-20
gi|40549413 glial cell derived neurotrophic factor isoform 3 [Ho... 70 2e-12
gi|40549411 glial cell derived neurotrophic factor isoform 2 pre... 69 4e-12
gi|4503975 glial cell derived neurotrophic factor isoform 1 prep... 69 4e-12
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 52 3e-07
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 48 6e-06
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 48 6e-06
gi|39812378 RAN binding protein 9 [Homo sapiens] 48 7e-06
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 48 7e-06
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 48 7e-06
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 47 1e-05
gi|38788260 bromodomain PHD finger transcription factor isoform ... 47 1e-05
gi|38788274 bromodomain PHD finger transcription factor isoform ... 47 1e-05
gi|154146199 sal-like 3 [Homo sapiens] 47 1e-05
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 46 2e-05
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 46 3e-05
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 45 4e-05
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 45 4e-05
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 45 4e-05
gi|33356148 formin-like 1 [Homo sapiens] 45 6e-05
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 44 8e-05
gi|157168329 formin 1 [Homo sapiens] 44 1e-04
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 44 1e-04
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 460 bits (1184), Expect = e-130
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MELGLGGLSTLSHCPWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLAS 60
MELGLGGLSTLSHCPWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLAS
Sbjct: 1 MELGLGGLSTLSHCPWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLAS 60
Query: 61 PAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGA 120
PAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGA
Sbjct: 61 PAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGA 120
Query: 121 RGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGS 180
RGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGS
Sbjct: 121 RGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGS 180
Query: 181 RPVSQPCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG 220
RPVSQPCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG
Sbjct: 181 RPVSQPCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG 220
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 460 bits (1184), Expect = e-130
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MELGLGGLSTLSHCPWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLAS 60
MELGLGGLSTLSHCPWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLAS
Sbjct: 1 MELGLGGLSTLSHCPWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLAS 60
Query: 61 PAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGA 120
PAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGA
Sbjct: 61 PAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGA 120
Query: 121 RGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGS 180
RGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGS
Sbjct: 121 RGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGS 180
Query: 181 RPVSQPCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG 220
RPVSQPCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG
Sbjct: 181 RPVSQPCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG 220
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 453 bits (1165), Expect = e-128
Identities = 220/228 (96%), Positives = 220/228 (96%), Gaps = 8/228 (3%)
Query: 1 MELGLGGLSTLSHCPWPRQQ--------PALWPTLAALALLSSVAEASLGSAPRSPAPRE 52
MELGLGGLSTLSHCPWPRQQ PALWPTLAALALLSSVAEASLGSAPRSPAPRE
Sbjct: 1 MELGLGGLSTLSHCPWPRQQAPLGLSAQPALWPTLAALALLSSVAEASLGSAPRSPAPRE 60
Query: 53 GPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPG 112
GPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPG
Sbjct: 61 GPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPG 120
Query: 113 SRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAG 172
SRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAG
Sbjct: 121 SRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAG 180
Query: 173 ALRPPPGSRPVSQPCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG 220
ALRPPPGSRPVSQPCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG
Sbjct: 181 ALRPPPGSRPVSQPCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG 228
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 453 bits (1165), Expect = e-128
Identities = 220/228 (96%), Positives = 220/228 (96%), Gaps = 8/228 (3%)
Query: 1 MELGLGGLSTLSHCPWPRQQ--------PALWPTLAALALLSSVAEASLGSAPRSPAPRE 52
MELGLGGLSTLSHCPWPRQQ PALWPTLAALALLSSVAEASLGSAPRSPAPRE
Sbjct: 1 MELGLGGLSTLSHCPWPRQQAPLGLSAQPALWPTLAALALLSSVAEASLGSAPRSPAPRE 60
Query: 53 GPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPG 112
GPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPG
Sbjct: 61 GPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPG 120
Query: 113 SRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAG 172
SRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAG
Sbjct: 121 SRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAG 180
Query: 173 ALRPPPGSRPVSQPCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG 220
ALRPPPGSRPVSQPCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG
Sbjct: 181 ALRPPPGSRPVSQPCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG 228
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 418 bits (1075), Expect = e-117
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 20 QPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRAR 79
QPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRAR
Sbjct: 37 QPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRAR 96
Query: 80 RPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGH 139
RPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGH
Sbjct: 97 RPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGH 156
Query: 140 RSDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRYEAVSFM 199
RSDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRYEAVSFM
Sbjct: 157 RSDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRYEAVSFM 216
Query: 200 DVNSTWRTVDRLSATACGCLG 220
DVNSTWRTVDRLSATACGCLG
Sbjct: 217 DVNSTWRTVDRLSATACGCLG 237
>gi|4758826 neurturin preproprotein [Homo sapiens]
Length = 197
Score = 94.7 bits (234), Expect = 5e-20
Identities = 61/127 (48%), Positives = 72/127 (56%), Gaps = 6/127 (4%)
Query: 95 PPSALPRGGRAARAGGPGSRARAA-GARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGS 153
P + P G R RAG RARA GAR C LR V V LGLG+ SDE V FR+C+G+
Sbjct: 75 PWAGRPPGPRR-RAGPRRRRARARLGARPCGLRELEVRVSELGLGYASDETVLFRYCAGA 133
Query: 154 CRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRYE-AVSFMDVNSTWRTVDRLS 212
C A +DL L L LR R +QPCCRPT YE VSF+D +S + TV LS
Sbjct: 134 CEAAARVYDLGLRRLRQRRRLR---RERVRAQPCCRPTAYEDEVSFLDAHSRYHTVHELS 190
Query: 213 ATACGCL 219
A C C+
Sbjct: 191 ARECACV 197
>gi|4758974 persephin precursor [Homo sapiens]
Length = 156
Score = 94.4 bits (233), Expect = 7e-20
Identities = 56/125 (44%), Positives = 73/125 (58%), Gaps = 16/125 (12%)
Query: 104 RAARAGG-------PGSRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSC-R 155
+ A+AGG P +R R A + C+L S + V LGLG+ S+E V FR+C+GSC R
Sbjct: 40 QVAKAGGTWLGTHRPLARLRRALSGPCQLWSLTLSVAELGLGYASEEKVIFRYCAGSCPR 99
Query: 156 RARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRYEAVSFMDVNSTWRTVDRLSATA 215
AR+ H L+LA L G G R PCCRPTRY V+F+D W+ + +LSA A
Sbjct: 100 GARTQHGLALARLQGQG--------RAHGGPCCRPTRYTDVAFLDDRHRWQRLPQLSAAA 151
Query: 216 CGCLG 220
CGC G
Sbjct: 152 CGCGG 156
>gi|40549413 glial cell derived neurotrophic factor isoform 3 [Homo
sapiens]
Length = 133
Score = 69.7 bits (169), Expect = 2e-12
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 89 APPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFR 148
AP P+A P R G G R + RGC L + + V LGLG+ + E + FR
Sbjct: 11 APHRVRLPAANPENSR-----GKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFR 65
Query: 149 FCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRY-EAVSFMDVNSTWRT 207
+CSGSC A + +D L +L L S V Q CCRP + + +SF+D N +
Sbjct: 66 YCSGSCDAAETTYDKILKNLSRNRRL----VSDKVGQACCRPIAFDDDLSFLDDNLVYHI 121
Query: 208 VDRLSATACGCL 219
+ + SA CGC+
Sbjct: 122 LRKHSAKRCGCI 133
>gi|40549411 glial cell derived neurotrophic factor isoform 2
precursor [Homo sapiens]
Length = 185
Score = 68.6 bits (166), Expect = 4e-12
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 92 PPAPPSALPRGGRAARAG--------GPGSRARAAGARGCRLRSQLVPVRALGLGHRSDE 143
P + LPR R +A G G R + RGC L + + V LGLG+ + E
Sbjct: 53 PDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKE 112
Query: 144 LVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRY-EAVSFMDVN 202
+ FR+CSGSC A + +D L +L L S V Q CCRP + + +SF+D N
Sbjct: 113 ELIFRYCSGSCDAAETTYDKILKNLSRNRRL----VSDKVGQACCRPIAFDDDLSFLDDN 168
Query: 203 STWRTVDRLSATACGCL 219
+ + + SA CGC+
Sbjct: 169 LVYHILRKHSAKRCGCI 185
>gi|4503975 glial cell derived neurotrophic factor isoform 1
preproprotein [Homo sapiens]
Length = 211
Score = 68.6 bits (166), Expect = 4e-12
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 92 PPAPPSALPRGGRAARAG--------GPGSRARAAGARGCRLRSQLVPVRALGLGHRSDE 143
P + LPR R +A G G R + RGC L + + V LGLG+ + E
Sbjct: 79 PDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKE 138
Query: 144 LVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRY-EAVSFMDVN 202
+ FR+CSGSC A + +D L +L L S V Q CCRP + + +SF+D N
Sbjct: 139 ELIFRYCSGSCDAAETTYDKILKNLSRNRRL----VSDKVGQACCRPIAFDDDLSFLDDN 194
Query: 203 STWRTVDRLSATACGCL 219
+ + + SA CGC+
Sbjct: 195 LVYHILRKHSAKRCGCI 211
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 52.4 bits (124), Expect = 3e-07
Identities = 66/203 (32%), Positives = 75/203 (36%), Gaps = 40/203 (19%)
Query: 15 PWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPRE------------GPPPVLASPA 62
P P P P AA + A A+ +AP SP P + PPP A+P
Sbjct: 129 PTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPP 188
Query: 63 GHLP--GGRTARWCSGRARRPP-------PQPSRPAPPPPAPPSALPRGGRAARAGGPGS 113
P G R A + AR PP P P + PPP P P GG A RAGG
Sbjct: 189 AVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGG-AVRAGG--- 244
Query: 114 RARAAGARGCRLRSQLVPVRAL-GLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAG 172
AR LR VR L G G L R R A + L L G
Sbjct: 245 -----AARPVSLRE---VVRYLGGSGGAGGRLTRGRVQGLLEEEAAARGRLERTRL---G 293
Query: 173 ALRPPPGSRPVSQP---CCRPTR 192
AL P G RP P RP+R
Sbjct: 294 ALALPRGDRPGRAPPAASARPSR 316
Score = 39.7 bits (91), Expect = 0.002
Identities = 33/106 (31%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 29 ALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRP 88
A+ +S S +A R PR G P A P G A + A PPP P+ P
Sbjct: 81 AVLRVSYKGSISYRNAARVQPPRRGATPPAPPRA---PRGAPA---AAAAAAPPPTPAPP 134
Query: 89 APPPP---APPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVP 131
PP P A P+ PR AA P G R R P
Sbjct: 135 PPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAP 180
Score = 37.0 bits (84), Expect = 0.013
Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 37 AEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPP-PQPSRPAP----- 90
A A+ +A P P PPP +P R R + A PP P P++P P
Sbjct: 118 APAAAAAAAPPPTPAPPPPP---APVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRA 174
Query: 91 -----PPP---APPSALPRGGRAARAGGPGSRAR 116
PPP APP+ P G RA P AR
Sbjct: 175 APLAAPPPAPAAPPAVAPPAG-PRRAPPPAVAAR 207
Score = 28.1 bits (61), Expect = 6.1
Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 46 RSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRA 105
R PAP G V + A + GG TA +G P PS P P PP P ALP G
Sbjct: 393 RGPAPGSGTRQVFSMAAMNKEGG-TASVATG-----PDSPS-PVPLPPGKP-ALP-GADG 443
Query: 106 ARAGGPGSR 114
G P R
Sbjct: 444 TPFGCPPGR 452
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 48.1 bits (113), Expect = 6e-06
Identities = 44/125 (35%), Positives = 49/125 (39%), Gaps = 19/125 (15%)
Query: 15 PWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPG--GRTAR 72
PW R + P AA LS+ + G A R P P G G G R
Sbjct: 87 PWGRWDWSPSPRFAAR--LSTSSPFPQGRAQRPQRGGVDLPATPGGPRGQCAGRSGDVLR 144
Query: 73 WCSGRARRPPPQPSRPAP-----------PPPAPPSALPRG--GRAARAGGPGSRA--RA 117
R RPPP P PAP P P+PP+ P G GRAA PG A RA
Sbjct: 145 RAGRRRARPPPVPRLPAPRAPRRPRGPATPDPSPPAGRPHGPAGRAAPGRRPGCTAQLRA 204
Query: 118 AGARG 122
G RG
Sbjct: 205 PGRRG 209
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 48.1 bits (113), Expect = 6e-06
Identities = 56/167 (33%), Positives = 62/167 (37%), Gaps = 37/167 (22%)
Query: 43 SAPRSPAPREGP---PPVLASPAGHLPGGRTARWCSGRARRPPPQPSRP----------- 88
S RSP+P G P +G G R G A PP +PS P
Sbjct: 295 SGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGR--PGSAHSPPDKPSSPSPRVRDKAAAA 352
Query: 89 APPPPA----------PPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLG 138
AP PPA PS+ RGGRA AGG G R R R S P R G
Sbjct: 353 APTPPARGKESPSPRSAPSSQGRGGRA--AGGAGRRRRRRRRRRRSRSSASAPRRR---G 407
Query: 139 HRSDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQ 185
R R S S RARS D G+G P PG P S+
Sbjct: 408 RRRPRPAPPRGSSRSLSRARSSSD------SGSGRGAPGPGPEPGSE 448
Score = 34.3 bits (77), Expect = 0.086
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 15/115 (13%)
Query: 18 RQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGR 77
R++P P + LS +S + R AP GP P S GH G+ R
Sbjct: 408 RRRPRPAPPRGSSRSLSRARSSSDSGSGRG-APGPGPEP--GSERGHGGHGK-------R 457
Query: 78 ARRPPPQPSRPAPPPPAPPSALPRGG----RAARAGGPGSRARAAGARGCRLRSQ 128
A+ PP+ +RPA P+P + RGG ++R+ GP R+ ++ + RS+
Sbjct: 458 AKERPPR-ARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSR 511
Score = 33.5 bits (75), Expect = 0.15
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 36 VAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTA----RWCSGRARRPPPQPSRPAP- 90
V + + +AP PA + P ++P+ GGR A R R RR + S AP
Sbjct: 345 VRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPR 404
Query: 91 ------PPPAPPSALPRGGRAARAGGPGSRARAAGARG 122
P PAPP R AR+ R A G
Sbjct: 405 RRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPG 442
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 47.8 bits (112), Expect = 7e-06
Identities = 38/108 (35%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 18 RQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGR 77
+QQ P AALA +S V P PA G +SPAG GG
Sbjct: 15 QQQQLSPPPPAALAPVSGVV------LPAPPAVSAG-----SSPAGSPGGGAGGEGLGAA 63
Query: 78 ARR------PPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAG 119
A PPP P+ APPPP PP P A +G P AAG
Sbjct: 64 AAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAG 111
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 47.8 bits (112), Expect = 7e-06
Identities = 51/165 (30%), Positives = 64/165 (38%), Gaps = 30/165 (18%)
Query: 39 ASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPP--PAPP 96
A L AP + AP E P++ + A PG R PPP P P PPP PA P
Sbjct: 747 ADLPMAPPASAPPEFLDPLMGAAAPQYPG-----------RGPPPAPPPPPPPPRAPADP 795
Query: 97 SALPRGGRAARAGGPG--SRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSC 154
+A P A + G G S G G + P A G ++E
Sbjct: 796 AASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGGGAAEE--------EGV 847
Query: 155 RRARSPHDLSLASLLGAGALRPP--PGSRPVSQPCCRPTRYEAVS 197
R R+P + GA RPP PG P+ P +PT VS
Sbjct: 848 PRPRAPPEPP-----DPGAPRPPPDPGPLPLPGPREKPTFVVQVS 887
Score = 38.1 bits (87), Expect = 0.006
Identities = 31/93 (33%), Positives = 33/93 (35%), Gaps = 22/93 (23%)
Query: 42 GSAPRSPAPRE------GPPPVLASPAGHLPGG-------RTARWCSGRARRPPPQPSRP 88
G APR+P G PV G PGG A W +PPP P P
Sbjct: 1125 GGAPRAPGAGRLDLGSGGRAPV---GTGTAPGGGPGSGVDAKAGWVDNTRPQPPPPPLPP 1181
Query: 89 APPP------PAPPSALPRGGRAARAGGPGSRA 115
P PAPP A P G P SRA
Sbjct: 1182 PPEAQPRRLEPAPPRARPEVAPEGEPGAPDSRA 1214
Score = 29.6 bits (65), Expect = 2.1
Identities = 29/88 (32%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 15 PWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLA----SPAGHLPGGRT 70
P P P P A + A AS GS SP P+ G SP G PGG
Sbjct: 782 PPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGGGA 841
Query: 71 ARWCSGRARRPPPQPSRPAPPPPAPPSA 98
A P+P APP P P A
Sbjct: 842 AE------EEGVPRPR--APPEPPDPGA 861
Score = 29.3 bits (64), Expect = 2.8
Identities = 26/92 (28%), Positives = 29/92 (31%), Gaps = 15/92 (16%)
Query: 35 SVAEASLGSAPRSPAPREGPPPVLASPAGHLPG-----GRTARWCSGRARRPPPQPSRPA 89
SV G S P PP A+P P G + W P
Sbjct: 1401 SVQAPPEGDTDPSTPPAPPTPPHPATPGDGFPSNDSGFGGSFEWAE----------DFPL 1450
Query: 90 PPPPAPPSALPRGGRAARAGGPGSRARAAGAR 121
PPP PP R + PG ARA AR
Sbjct: 1451 LPPPGPPLCFSRFSVSPALETPGPPARAPDAR 1482
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 47.8 bits (112), Expect = 7e-06
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 45 PRSPAPR-----EGPPPVLASPAGHLPGG---RTARWCSGRARRPPPQ----PSRPAPPP 92
P+ P P+ +GPPP P G P G R+ R G+ + PPPQ P P PPP
Sbjct: 118 PQGPPPQGGNRPQGPPPP-GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPP 176
Query: 93 PAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVP 131
P P+GG+ + P + + +G + RS P
Sbjct: 177 GKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSP 215
Score = 46.6 bits (109), Expect = 2e-05
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 45 PRSPAPR-----EGPPPVLASPAGHLPGG---RTARWCSGRARRPPPQ----PSRPAPPP 92
P+ P P+ +GPPP P G P G R+ R G+ + PPPQ P P PPP
Sbjct: 57 PQGPPPQGGNKPQGPPPP-GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPP 115
Query: 93 PAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVP 131
P P+GG + P + + +G + RS P
Sbjct: 116 GKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSP 154
Score = 44.7 bits (104), Expect = 6e-05
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 45 PRSPAPR-----EGPPPVLASPAGHLPGG---RTARWCSGRARRPPPQ----PSRPAPPP 92
P+ P P+ +GPPP P G P G R+++ G+ + PPPQ P P PPP
Sbjct: 179 PQGPPPQGGKKPQGPPPP-GKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPP 237
Query: 93 PAPPSALPRGGRAARAGGPGSRARAAGARG 122
P P+GG + P + + A+G
Sbjct: 238 GKPQGPPPQGGNKPQGPPPPGKPQGPPAQG 267
Score = 36.6 bits (83), Expect = 0.017
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 19/89 (21%)
Query: 45 PRSPAPR-----EGPPPVLASPAGHLPGG---RTARWCSGRARRPPPQ----PSRPAPP- 91
P+ P P+ +GPPP GG ++AR G+ + PP Q P P PP
Sbjct: 240 PQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPA 299
Query: 92 ------PPAPPSALPRGGRAARAGGPGSR 114
P APP+ P+G GG SR
Sbjct: 300 GGNPQQPQAPPAGQPQGPPRPPQGGRPSR 328
Score = 35.4 bits (80), Expect = 0.038
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 16/105 (15%)
Query: 30 LALLSSVAEASLGSAPR---SPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPS 86
L +L SVA +L SA + E P + +P G P G +P
Sbjct: 2 LLILLSVALLALSSAQNLNEDVSQEESPSLIAGNPQGPSPQGGN-------------KPQ 48
Query: 87 RPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVP 131
P PPP P P+GG + P + + +G + RS P
Sbjct: 49 GPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSP 93
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 47.4 bits (111), Expect = 1e-05
Identities = 37/109 (33%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 19 QQPALWPTLA-----ALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARW 73
Q PA+ PT A + LS+ + AP +P GP ASPA G A +
Sbjct: 315 QSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPK---ASPAPSHNSGTPAPY 371
Query: 74 CSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARG 122
A PP PS P+ P PPS P GG +GG GS + + + G
Sbjct: 372 AQAVA---PPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAG 417
Score = 27.7 bits (60), Expect = 8.0
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 42 GSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPR 101
G+ S + P V S +G G A S +A PP P P P PSA
Sbjct: 425 GATSYSSVVADSPAEVALSSSG----GNNA---SSQALGPPSGPHNPPPSTSKEPSAAAP 477
Query: 102 GGRAARAGGPGSRA 115
G A G G+ +
Sbjct: 478 TGAGGVAPGSGNNS 491
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 47.0 bits (110), Expect = 1e-05
Identities = 32/100 (32%), Positives = 38/100 (38%), Gaps = 24/100 (24%)
Query: 47 SPAPREGPPPVLASPAGHLP----GGRTARWCSGRA------------------RRPPPQ 84
+PAP PPP + P G L G RW + +A R+PPP
Sbjct: 21 APAPPPPPPPPTSGPIGGLRSRHRGSSRGRWAAAQAEVAPKTRLSSPRGGSSSRRKPPPP 80
Query: 85 PSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCR 124
P PAPP + P RGG R GG G A R
Sbjct: 81 P--PAPPSTSAPGRGGRGGGGGRTGGGGGGGHLARTTAAR 118
Score = 38.1 bits (87), Expect = 0.006
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Query: 76 GRARRPPPQPSRPA-------PP-PPAPPSALPRGGRAARAGGPGSRARAAGAR 121
GR RPP QP+ PA PP PP PP++ P GG +R G SR R A A+
Sbjct: 3 GRRGRPPKQPAAPAAERCAPAPPPPPPPPTSGPIGGLRSRHRG-SSRGRWAAAQ 55
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 47.0 bits (110), Expect = 1e-05
Identities = 32/100 (32%), Positives = 38/100 (38%), Gaps = 24/100 (24%)
Query: 47 SPAPREGPPPVLASPAGHLP----GGRTARWCSGRA------------------RRPPPQ 84
+PAP PPP + P G L G RW + +A R+PPP
Sbjct: 21 APAPPPPPPPPTSGPIGGLRSRHRGSSRGRWAAAQAEVAPKTRLSSPRGGSSSRRKPPPP 80
Query: 85 PSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCR 124
P PAPP + P RGG R GG G A R
Sbjct: 81 P--PAPPSTSAPGRGGRGGGGGRTGGGGGGGHLARTTAAR 118
Score = 38.1 bits (87), Expect = 0.006
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Query: 76 GRARRPPPQPSRPA-------PP-PPAPPSALPRGGRAARAGGPGSRARAAGAR 121
GR RPP QP+ PA PP PP PP++ P GG +R G SR R A A+
Sbjct: 3 GRRGRPPKQPAAPAAERCAPAPPPPPPPPTSGPIGGLRSRHRG-SSRGRWAAAQ 55
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 47.0 bits (110), Expect = 1e-05
Identities = 38/106 (35%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 17 PRQQPALWPTLAALALLSSVAEASL-GSAPRSPAPREGPPPVLASPAGHLPGGRTARWCS 75
P P+ P LAAL L + A++ GS P +PA EG P+ +G G A +
Sbjct: 251 PGPAPSQLPGLAALPLSAGAPAAAIAGSGPAAPAAFEGAQPLSRPESGASTPGGPAEPSA 310
Query: 76 GRARRPPPQPSRPAPPPPAPPSAL---PRGGRAARAGGPGSRARAA 118
A P P+ PA P PAP SA P+ A PGS AA
Sbjct: 311 PAAPSAAPAPAAPA-PAPAPQSAASSQPQSASTPPALAPGSLLGAA 355
Score = 33.5 bits (75), Expect = 0.15
Identities = 48/183 (26%), Positives = 68/183 (37%), Gaps = 33/183 (18%)
Query: 16 WPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCS 75
+P PA P+ A + + A A P +E P + A PAG
Sbjct: 94 FPEPSPASSPSERAESEAAEEAGAEGAEGEARPVEKEAEP-MDAEPAGD----------- 141
Query: 76 GRARRPPPQPSRPAPPPPA--PPS-------------ALPRGGRAAR-AGGPGSRARAAG 119
R P P P+ PAPP PA PS A+ + + AR AGG G+ A
Sbjct: 142 --TRAPRPPPAAPAPPTPAYGAPSTNVTLEALLSTKVAVAQFSQGARAAGGSGAGGGVAA 199
Query: 120 ARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPG 179
A + QL+ ++ + H+ + + R S R P SL+ A P P
Sbjct: 200 AAVPLILEQLMALQQQQI-HQLQLIEQIR--SQVALMQRPPPRPSLSPAAAPSAPGPAPS 256
Query: 180 SRP 182
P
Sbjct: 257 QLP 259
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 46.2 bits (108), Expect = 2e-05
Identities = 52/153 (33%), Positives = 62/153 (40%), Gaps = 15/153 (9%)
Query: 13 HCPWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTAR 72
H P P + P A + L++ A AP P G P A P G LPGG
Sbjct: 44 HAPPPGRPSCSRPLCAGSSCLATPEPAR---APSIAEPGPGIPVAAAKP-GVLPGGGG-- 97
Query: 73 WCSG-RARRPPPQPSRP---APPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQ 128
C+G R PP P+R P P AP S R GR AR GGP +A AG
Sbjct: 98 -CTGARTENPPLSPTRGDCRVPVPAAPISLRWRSGREARPGGP--QAGRAGDPKADQAMH 154
Query: 129 LVPVRALGLGHRSDELVRFRFCSGSCRRARSPH 161
L P A L + + R + S R SPH
Sbjct: 155 LQPAWAPKL--QPPSVCRQQPPGNSRARPHSPH 185
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 46.2 bits (108), Expect = 2e-05
Identities = 42/118 (35%), Positives = 51/118 (43%), Gaps = 11/118 (9%)
Query: 15 PWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWC 74
P P PA P LA+ A E+ + P SP PP A+P + RT R
Sbjct: 513 PAPAPAPAPAPALASAATKERT-ESEVPPRPASPKVTRSPPET-AAPVEDM-ARRTKRPA 569
Query: 75 SGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGS-RARAAGARGCRLRSQLVP 131
R PPPQ S PPAPP LP G +G PG+ +A G LR+ VP
Sbjct: 570 PARPTMPPPQVSGSRSSPPAPP--LPPG-----SGSPGTPQALPRRLVGSSLRAPTVP 620
Score = 30.4 bits (67), Expect = 1.2
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 21 PALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARR 80
P L P + ++ +GS+ R+P PPP+ +P P R +R
Sbjct: 590 PPLPPGSGSPGTPQALPRRLVGSSLRAPTV---PPPLPPTPPQ--PARRQSRRSPASPSP 644
Query: 81 PPPQPSRPAPPPPAPPSALPRGGRAARAGGP 111
P P+ P+P + P+ + G A G P
Sbjct: 645 ASPGPASPSPVSLSNPAQVDLGAATAEGGAP 675
Score = 29.3 bits (64), Expect = 2.8
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 17 PRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSG 76
P P L PT A S + +P SP P P L++PA G TA +
Sbjct: 617 PTVPPPLPPTPPQPARRQS-RRSPASPSPASPGPASPSPVSLSNPAQVDLGAATAEGGAP 675
Query: 77 RARRPPPQPSRPAPPPPAPPSAL 99
A P P PA PP P +L
Sbjct: 676 EAISGVPTP--PAIPPQPRPRSL 696
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 45.8 bits (107), Expect = 3e-05
Identities = 33/88 (37%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 41 LGSAPRSPAPREGPPPVLASPAGHLPG--GRTARW------CSGRARRPPPQPSRPAP-- 90
LG AP P PR PPP P P GR+ G PPP P P P
Sbjct: 347 LGIAPPPPTPRGPPPPGRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPPPPSS 406
Query: 91 -----PPPAPPSALPRGGRAARAGGPGS 113
PPP PP+ +P GG A GG G+
Sbjct: 407 GNGPAPPPLPPALVPAGG-LAPGGGRGA 433
Score = 35.8 bits (81), Expect = 0.029
Identities = 40/144 (27%), Positives = 47/144 (32%), Gaps = 35/144 (24%)
Query: 7 GLSTLSHCPWPRQQPA----LWPTLAALALLSSVAEASLGSAPRS--------------- 47
G +SH W Q L P L +L + ++EA L A S
Sbjct: 243 GFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETSKLIYDFIEDQGGLEA 302
Query: 48 ---------PAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSA 98
P P PPP + LP GR+ PP P APPPP P
Sbjct: 303 VRQEMRRQEPLP---PPPPPSRGGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPTPRGP 359
Query: 99 LPRGGRAARAGGPGSRARAAGARG 122
P G R G P A G G
Sbjct: 360 PPPG----RGGPPPPPPPATGRSG 379
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 45.4 bits (106), Expect = 4e-05
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 4 GLGGLSTLSHCPWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAG 63
G+ +H P PR++PA A LS++A A RSP P+ G +ASP
Sbjct: 47 GIRPAPAAAHPPAPRERPAA-------ARLSALAAAQ--PRRRSPGPQGGGGGDIASP-- 95
Query: 64 HLPGGRTARWCSG--RARRPPPQPSRPAPPPPAPPS 97
LP R A P P P+RP+ PPP+PPS
Sbjct: 96 -LPPALQPRGAPAVPAAPSPGPLPARPSSPPPSPPS 130
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 45.4 bits (106), Expect = 4e-05
Identities = 38/114 (33%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 46 RSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRA 105
RSP+P P P A+ R R SG A+ S P PPAP S
Sbjct: 497 RSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHR 556
Query: 106 ARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARS 159
+R PGS A ++ R R RS R+ RS R R G RR+RS
Sbjct: 557 SRDRKPGSHASSSARRRSRSRS-----RSRSTRRRSRSTDRRR---GGSRRSRS 602
Score = 38.1 bits (87), Expect = 0.006
Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 30/98 (30%)
Query: 15 PWPRQQPALWPTLAALALLSSVAEAS------------LGSAPRSPAPREGPPPVLASPA 62
P P P+L P L A +V+ S LG+ PAP P +SP+
Sbjct: 139 PIPLPVPSLLPRLRAWRTGKTVSPQSNSSRPTCARHLTLGTGDGGPAPPPAPSSASSSPS 198
Query: 63 GHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALP 100
P P S P+PPPP PP A P
Sbjct: 199 ------------------PSPSSSSPSPPPPPPPPAPP 218
Score = 27.7 bits (60), Expect = 8.0
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 75 SGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQL 129
S + RPP + + + PPP PP + G S + + +R +L+S++
Sbjct: 791 SSKKARPPKESAPSSGPPPKPP--------VSSGSGSSSSSSSCSSRKVKLQSKV 837
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 45.4 bits (106), Expect = 4e-05
Identities = 40/105 (38%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 29 ALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSG-RARRPPP-QPS 86
A LL A G R+PA R GP P A A PG R R G + PPP P
Sbjct: 876 AHGLLLGAPLAGPGVEARTPADR-GPSPAPAPAASPQPGSRGPRDGLGPEPQEPPPGPPP 934
Query: 87 RPA------PPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRL 125
PA PPPPAPPS +G + G P R CRL
Sbjct: 935 SPAAAPEAVPPPPAPPSYSDKGVQTPSKGTPAPLPN-GNHRYCRL 978
Score = 37.7 bits (86), Expect = 0.008
Identities = 28/65 (43%), Positives = 31/65 (47%), Gaps = 16/65 (24%)
Query: 73 WCSGR--------ARRP--PPQPSRPAPPPPAPPSALPR-----GGRAARAGGPGSRARA 117
+CSGR ARRP PP P+R P PA P A PR G R AGG +
Sbjct: 599 YCSGRRAPEDAPAARRPKAPPGPARAPPGQPAEPDA-PRSSPGPGAREEGAGGAATPEDG 657
Query: 118 AGARG 122
AG RG
Sbjct: 658 AGGRG 662
Score = 37.4 bits (85), Expect = 0.010
Identities = 42/151 (27%), Positives = 55/151 (36%), Gaps = 15/151 (9%)
Query: 45 PRSPAPREGPP----PVLASPAGHLPGGRTARWC---SGRARRPPPQPSRPAPPPPAPPS 97
PR PA GPP P SPA + R + + A PPP PAP P P S
Sbjct: 714 PRRPAAPPGPPGPAAPPAPSPAAPVRTRRRRKLYELHAAGAPPPPPPGHAPAPESPRPGS 773
Query: 98 ALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRA 157
G A A PG A + R L G + L + C+ +CR +
Sbjct: 774 GSGSGPGLAPARSPGPAADGPIDLSKKPRRPLP-------GAPAPALADYHECT-ACRVS 825
Query: 158 RSPHDLSLASLLGAGALRPPPGSRPVSQPCC 188
+ LA + PPPG+ + C
Sbjct: 826 FHSLEAYLAHKKYSCPAAPPPGALGLPAAAC 856
Score = 28.1 bits (61), Expect = 6.1
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 73 WCSGRARRPPPQPSRP--APPPPAPPSALPRGGRAARAGGPGSRARAAGA 120
+C+ R PP +P+ P P P APP+ P R AAGA
Sbjct: 705 YCASRHDPPPRRPAAPPGPPGPAAPPAPSPAAPVRTRRRRKLYELHAAGA 754
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 44.7 bits (104), Expect = 6e-05
Identities = 38/112 (33%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 25 PTLAALALLSSVAEASLGSAPRSP-------APREGPP--PVLASPAGHLPGGRTARWCS 75
PT + L+ AE + G+AP P +P+E PP P A P P A
Sbjct: 522 PTGSPSPDLAPAAEPAPGAAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEPPPAPPLP 581
Query: 76 GRARRPPPQP------SRPAPPPPAPPSALPRG-----GRAARAGGPGSRAR 116
G PPP P P PPPP PP P G GR GPG +A+
Sbjct: 582 GDLPPPPPPPPPPPGTDGPVPPPPPPPPPPPGGPPDALGRRDSELGPGVKAK 633
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/72 (38%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 35 SVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAP---P 91
+VA S G AP P P P LA A PG PPP P P+P P
Sbjct: 507 AVATPSGGDAPTPGVPTGSPSPDLAPAAEPAPGAAPP--------PPPPLPGLPSPQEAP 558
Query: 92 PPAPPSALPRGG 103
P APP A P G
Sbjct: 559 PSAPPQAPPLPG 570
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 44.3 bits (103), Expect = 8e-05
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 39 ASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSA 98
A + S PR+P P P P L + T RW S PPP P+ P PP P+PP A
Sbjct: 578 APVPSPPRAPTPPSTPVP-LPEKRRSILREPTFRWTSLTRELPPPPPAPPPPPAPSPPPA 636
Score = 35.4 bits (80), Expect = 0.038
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 35 SVAEASLGSAPRSPAPREGPP--PVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPP 92
+VAE + +A + A PP P SP LP T+ PP P P PPP
Sbjct: 385 AVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPPSTS----------PPPPLCPPPPP 434
Query: 93 PAPPSALP 100
P P LP
Sbjct: 435 PVSPPPLP 442
Score = 32.0 bits (71), Expect = 0.43
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Query: 38 EASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAP-PPPAPP 96
EA L P +P P PPP L P+ P PPP P P P P P PP
Sbjct: 398 EAKLPPPPLTP-PAPSPPPPLPPPSTSPPPPLCP---------PPPPPVSPPPLPSPPPP 447
Query: 97 SA 98
A
Sbjct: 448 PA 449
Score = 31.2 bits (69), Expect = 0.73
Identities = 27/98 (27%), Positives = 33/98 (33%), Gaps = 23/98 (23%)
Query: 44 APRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARR----------PPPQPSRPAPPP- 92
AP++P R P G P GR A C + + P P+P P P
Sbjct: 202 APQAPRSRACEPSTPRRSRGR-PPGRPAGPCRRKQQAVVVAEAAVTIPKPEPPPPVVPVK 260
Query: 93 -----------PAPPSALPRGGRAARAGGPGSRARAAG 119
P P PR G + GG G R R G
Sbjct: 261 HQTGSWKCKEGPGPGPGTPRRGGQSSRGGRGGRGRGRG 298
Score = 31.2 bits (69), Expect = 0.73
Identities = 35/120 (29%), Positives = 40/120 (33%), Gaps = 17/120 (14%)
Query: 4 GLGGLSTLSHCPWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPP-PVLASPA 62
G G+ LS P P + + L V G P P + PP P SP
Sbjct: 2168 GAPGVRVLSLGPAPEPPKPATSKIILVNKLGQVFVKMAGEGEPVPPPVKQPPLPPTISPT 2227
Query: 63 GH----LPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAA 118
LP G P RPAPPPP PP L + GP S R A
Sbjct: 2228 APTSWTLPPGPLL------GVLPVVGVVRPAPPPPPPPLTL------VLSSGPASPPRQA 2275
Score = 30.0 bits (66), Expect = 1.6
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 44 APRSPAPREGPPPVLASPAGHLPGGRTARWC----SGRARRPPPQPSRPAPPPP 93
APR P R PP+ SP +P + SG P P PS PPPP
Sbjct: 1920 APRPPPSRWASPPLKTSPQLRVPPPTSVVTALTPTSGELAPPGPAPS---PPPP 1970
Score = 29.6 bits (65), Expect = 2.1
Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 10/123 (8%)
Query: 9 STLSHCPWPRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGG 68
+T S P + P P+ A L + SV AP +P P PPP SPA P
Sbjct: 638 ATSSRRPLLLRAPQFTPSEAHLKIYESVLTPPPLGAPEAPEPE--PPPADDSPAEPEPR- 694
Query: 69 RTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQ 128
GR P P P G A + GP ++A+ L++Q
Sbjct: 695 -----AVGRTNHLSLPRFAPVVTTPVKAEVSPHGA-PALSNGPQTQAQLLQPLQA-LQTQ 747
Query: 129 LVP 131
L+P
Sbjct: 748 LLP 750
Score = 28.5 bits (62), Expect = 4.7
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 11 LSHCPW-PRQQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGH--LPG 67
L + PW PR++PA L + E + SPAP PP P L
Sbjct: 1781 LEYRPWGPREEPAH---------LEAAEENQ--TIVHSPAPSSEPPGGEDPPLDTDVLVP 1829
Query: 68 GRTARWCSGRARRPPPQPSRPAPPPPAPPS 97
G R + PP +P + PPPAP S
Sbjct: 1830 GAPERHSPIQNLDPPLRPDSGSAPPPAPRS 1859
Score = 28.1 bits (61), Expect = 6.1
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 36 VAEASLGSAPRSPAPRE---GPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPP 92
V+ L S P PA E PPPV+ + GR S RA R + P
Sbjct: 436 VSPPPLPSPPPPPAQEEQEESPPPVVPATCSR-KRGRPPLTPSQRAEREAARAGPEGTSP 494
Query: 93 PAPPSALPRGG 103
P P + GG
Sbjct: 495 PTPTPSTATGG 505
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 43.9 bits (102), Expect = 1e-04
Identities = 38/134 (28%), Positives = 45/134 (33%), Gaps = 12/134 (8%)
Query: 28 AALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSR 87
AAL + +A + P PA PPP+ + P +G PPP P
Sbjct: 629 AALQPMEGMASNQQKALPPPPASIPPPPPLPSGLGSLSPAPPMPPVSAGPPLPPPPPPPP 688
Query: 88 P-------APPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHR 140
P PPPP PP LP GGP G L P GLG
Sbjct: 689 PLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPPAPPPPG-----LAPPPPPGLFFGLGSS 743
Query: 141 SDELVRFRFCSGSC 154
S + R SC
Sbjct: 744 SSQCPRKPAIEPSC 757
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 43.9 bits (102), Expect = 1e-04
Identities = 38/110 (34%), Positives = 49/110 (44%), Gaps = 24/110 (21%)
Query: 17 PRQQPALWPTLAALALLSSVAEASLGSAP----RSPAPREGPP-----PVLASPAGHLPG 67
PR P PT ++E + S P R+P+ GPP P+ A PA LP
Sbjct: 1041 PRTSPCQSPT---------ISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQ 1091
Query: 68 GRTARWCSGRARRPPPQ----PSRPAPPP-PAPPSALPRGGRAARAGGPG 112
A+ + R PPP+ P+RPAPP P PPS + A GPG
Sbjct: 1092 KDPAQPLEPK-RPPPPRPVAPPTRPAPPQRPPPPSGRSQPSPQAGLAGPG 1140
Score = 28.5 bits (62), Expect = 4.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 68 GRTARWCSGRARRPPPQPSRPAPPPPAPP 96
G +C +RRPPP P PP +PP
Sbjct: 1478 GTNVSFCVLPSRRPPPPPVPLLPPGTSPP 1506
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,735,874
Number of Sequences: 37866
Number of extensions: 949668
Number of successful extensions: 26608
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 1623
Number of HSP's that attempted gapping in prelim test: 11007
Number of HSP's gapped (non-prelim): 10268
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.