Guide to the Human Genome
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Name: SMAD2 Sequence: fasta or formatted (437aa) NCBI GI: 209693426
Description:

Sma- and Mad-related protein 2 isoform 2

Referenced in:

FOX Family
Myc and Related Functions
TGF-beta Family

Other entries for this name:
alt prot [467aa] Sma- and Mad-related protein 2 isoform 1
alt prot [467aa] Sma- and Mad-related protein 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         20           2
 C cysteine            3.4         15           1
 D aspartate           3.2         14           2
 E glutamate           6.9         30           2
 F phenylalanine       3.0         13           1
 G glycine             6.9         30           3
 H histidine           3.0         13           2
 I isoleucine          4.1         18           1
 K lysine              4.6         20           2
 L leucine             9.2         40           2
 M methionine          1.6          7           1
 N asparagine          5.3         23           2
 P proline             7.8         34           3
 Q glutamine           4.8         21           2
 R arginine            5.0         22           2
 S serine              8.0         35           2
 T threonine           6.6         29           2
 V valine              6.6         29           2
 W tryptophan          2.1          9           1
 Y tyrosine            3.4         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Sma- and Mad-related protein 2 isoform 2 
SMAD2                 0.982   Sma- and Mad-related protein 2 isoform 1 
SMAD2                 0.982   Sma- and Mad-related protein 2 isoform 1 
SMAD3                 0.895   mothers against decapentaplegic homolog 3 isoform 1 [...
SMAD3                 0.755   mothers against decapentaplegic homolog 3 isoform 3...
SMAD3                 0.664   mothers against decapentaplegic homolog 3 isoform 2...
SMAD5                 0.598   SMAD, mothers against DPP homolog 5 
SMAD5                 0.598   SMAD, mothers against DPP homolog 5 
SMAD5                 0.598   SMAD, mothers against DPP homolog 5 
SMAD9                 0.592   SMAD family member 9 isoform b 
SMAD1                 0.589   Sma- and Mad-related protein 1 
SMAD1                 0.589   Sma- and Mad-related protein 1 
SMAD9                 0.578   SMAD family member 9 isoform a 
SMAD3                 0.474   mothers against decapentaplegic homolog 3 isoform 4...
SMAD4                 0.160   mothers against decapentaplegic homolog 4 
SMAD6                 0.131   SMAD family member 6 isoform 1 
SMAD7                 0.120   SMAD family member 7 
SMAD6                 0.089   SMAD family member 6 isoform 2 
SNAI2                 0.011   snail 2 
YLPM1                 0.011   YLP motif containing 1 
FAM22G                0.010   hypothetical protein LOC441457 
NUP214                0.009   nucleoporin 214kDa 
RBM12                 0.009   RNA binding motif protein 12 
RBM12                 0.009   RNA binding motif protein 12 
ASAP1                 0.009   development and differentiation enhancing factor 1 [...
FHAD1                 0.009   forkhead-associated (FHA) phosphopeptide binding do...
SPEN                  0.008   spen homolog, transcriptional regulator 
NFKBIE                0.008   nuclear factor of kappa light polypeptide gene enhan...
USP13                 0.008   ubiquitin thiolesterase 13 
ZFYVE20               0.008   FYVE-finger-containing Rab5 effector protein rabenos...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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