Guide to the Human Genome
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Name: USP13 Sequence: fasta or formatted (863aa) NCBI GI: 215598688
Description:

ubiquitin thiolesterase 13

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         58           2
 C cysteine            1.5         13           2
 D aspartate           6.4         55           3
 E glutamate           7.8         67           3
 F phenylalanine       4.9         42           2
 G glycine             7.1         61           2
 H histidine           2.8         24           1
 I isoleucine          5.1         44           2
 K lysine              5.0         43           2
 L leucine             8.3         72           2
 M methionine          3.2         28           1
 N asparagine          4.8         41           3
 P proline             6.5         56           2
 Q glutamine           3.6         31           2
 R arginine            5.7         49           2
 S serine              7.1         61           2
 T threonine           3.4         29           1
 V valine              5.7         49           2
 W tryptophan          1.2         10           1
 Y tyrosine            3.5         30           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin thiolesterase 13 
USP5                  0.599   ubiquitin specific peptidase 5 isoform 2 
USP5                  0.597   ubiquitin specific peptidase 5 isoform 1 
USP8                  0.033   ubiquitin specific peptidase 8 
USP8                  0.033   ubiquitin specific peptidase 8 
USP8                  0.033   ubiquitin specific peptidase 8 
USP3                  0.027   ubiquitin thiolesterase 3 
UBAC1                 0.023   ubiquitin associated domain containing 1 
USP21                 0.017   ubiquitin-specific protease 21 
USP21                 0.017   ubiquitin-specific protease 21 
USP15                 0.016   ubiquitin specific peptidase 15 
USP44                 0.015   ubiquitin thiolesterase 44 
USP44                 0.015   ubiquitin thiolesterase 44 
USP4                  0.015   ubiquitin specific protease 4 isoform a 
USP4                  0.015   ubiquitin specific protease 4 isoform b 
USP33                 0.015   ubiquitin specific protease 33 isoform 3 
USP33                 0.015   ubiquitin specific protease 33 isoform 1 
USP33                 0.015   ubiquitin specific protease 33 isoform 2 
UBXN1                 0.015   UBX domain protein 1 
USP31                 0.014   ubiquitin specific peptidase 31 
USP20                 0.013   ubiquitin specific protease 20 
USP20                 0.013   ubiquitin specific protease 20 
USP20                 0.013   ubiquitin specific protease 20 
USP51                 0.013   ubiquitin specific protease 51 
USP48                 0.013   ubiquitin specific protease 48 isoform b 
USP48                 0.013   ubiquitin specific protease 48 isoform a 
USP38                 0.013   ubiquitin specific peptidase 38 
USP19                 0.013   ubiquitin thioesterase 19 
USP14                 0.012   ubiquitin specific protease 14 isoform b 
USP14                 0.011   ubiquitin specific protease 14 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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