Guide to the Human Genome
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Name: SMAD2 Sequence: fasta or formatted (467aa) NCBI GI: 51173730
Description:

Sma- and Mad-related protein 2 isoform 1

Referenced in:

FOX Family
Myc and Related Functions
TGF-beta Family

Other entries for this name:
alt prot [437aa] Sma- and Mad-related protein 2 isoform 2
alt mRNA [467aa] Sma- and Mad-related protein 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         20           2
 C cysteine            3.4         16           1
 D aspartate           3.4         16           2
 E glutamate           6.9         32           2
 F phenylalanine       3.0         14           1
 G glycine             6.9         32           3
 H histidine           2.8         13           2
 I isoleucine          4.3         20           1
 K lysine              4.3         20           2
 L leucine             9.0         42           2
 M methionine          1.5          7           1
 N asparagine          5.1         24           2
 P proline             7.5         35           3
 Q glutamine           4.9         23           2
 R arginine            4.7         22           2
 S serine              8.6         40           2
 T threonine           7.5         35           2
 V valine              6.2         29           2
 W tryptophan          2.4         11           1
 Y tyrosine            3.4         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Sma- and Mad-related protein 2 isoform 1 
SMAD2                 1.000   Sma- and Mad-related protein 2 isoform 1 
SMAD2                 0.916   Sma- and Mad-related protein 2 isoform 2 
SMAD3                 0.818   mothers against decapentaplegic homolog 3 isoform 1 [...
SMAD3                 0.705   mothers against decapentaplegic homolog 3 isoform 3...
SMAD3                 0.620   mothers against decapentaplegic homolog 3 isoform 2...
SMAD5                 0.542   SMAD, mothers against DPP homolog 5 
SMAD5                 0.542   SMAD, mothers against DPP homolog 5 
SMAD5                 0.542   SMAD, mothers against DPP homolog 5 
SMAD9                 0.535   SMAD family member 9 isoform b 
SMAD1                 0.533   Sma- and Mad-related protein 1 
SMAD1                 0.533   Sma- and Mad-related protein 1 
SMAD9                 0.523   SMAD family member 9 isoform a 
SMAD3                 0.443   mothers against decapentaplegic homolog 3 isoform 4...
SMAD4                 0.149   mothers against decapentaplegic homolog 4 
SMAD6                 0.111   SMAD family member 6 isoform 1 
SMAD7                 0.103   SMAD family member 7 
SMAD6                 0.084   SMAD family member 6 isoform 2 
SNAI2                 0.010   snail 2 
YLPM1                 0.010   YLP motif containing 1 
FAM22G                0.009   hypothetical protein LOC441457 
NUP214                0.008   nucleoporin 214kDa 
RBM12                 0.008   RNA binding motif protein 12 
RBM12                 0.008   RNA binding motif protein 12 
ASAP1                 0.008   development and differentiation enhancing factor 1 [...
FHAD1                 0.008   forkhead-associated (FHA) phosphopeptide binding do...
NFKBIE                0.007   nuclear factor of kappa light polypeptide gene enhan...
USP13                 0.007   ubiquitin thiolesterase 13 
ZFYVE20               0.007   FYVE-finger-containing Rab5 effector protein rabenos...
ITGAX                 0.006   integrin alpha X precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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