Guide to the Human Genome
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Name: SMAD9 Sequence: fasta or formatted (467aa) NCBI GI: 187828357
Description:

SMAD family member 9 isoform a

Referenced in:

TGF-beta Family

Other entries for this name:
alt prot [430aa] SMAD family member 9 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         22           1
 C cysteine            3.6         17           2
 D aspartate           3.2         15           1
 E glutamate           6.0         28           3
 F phenylalanine       3.6         17           1
 G glycine             5.1         24           2
 H histidine           5.4         25           2
 I isoleucine          3.0         14           1
 K lysine              4.7         22           4
 L leucine             8.1         38           2
 M methionine          1.3          6           1
 N asparagine          3.9         18           2
 P proline             9.2         43           2
 Q glutamine           4.7         22           2
 R arginine            4.9         23           2
 S serine             11.1         52           2
 T threonine           4.5         21           2
 V valine              7.5         35           2
 W tryptophan          1.7          8           1
 Y tyrosine            3.6         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SMAD family member 9 isoform a 
SMAD9                 0.892   SMAD family member 9 isoform b 
SMAD1                 0.785   Sma- and Mad-related protein 1 
SMAD1                 0.785   Sma- and Mad-related protein 1 
SMAD5                 0.767   SMAD, mothers against DPP homolog 5 
SMAD5                 0.767   SMAD, mothers against DPP homolog 5 
SMAD5                 0.767   SMAD, mothers against DPP homolog 5 
SMAD3                 0.542   mothers against decapentaplegic homolog 3 isoform 1 [...
SMAD2                 0.536   Sma- and Mad-related protein 2 isoform 2 
SMAD2                 0.519   Sma- and Mad-related protein 2 isoform 1 
SMAD2                 0.519   Sma- and Mad-related protein 2 isoform 1 
SMAD3                 0.463   mothers against decapentaplegic homolog 3 isoform 3...
SMAD3                 0.385   mothers against decapentaplegic homolog 3 isoform 2...
SMAD3                 0.321   mothers against decapentaplegic homolog 3 isoform 4...
SMAD4                 0.259   mothers against decapentaplegic homolog 4 
SMAD7                 0.078   SMAD family member 7 
SMAD6                 0.075   SMAD family member 6 isoform 1 
SMAD6                 0.075   SMAD family member 6 isoform 2 
RERE                  0.018   atrophin-1 like protein isoform b 
RERE                  0.018   atrophin-1 like protein isoform a 
RERE                  0.018   atrophin-1 like protein isoform a 
MAGEC1                0.015   melanoma antigen family C, 1 
HCLS1                 0.015   hematopoietic cell-specific Lyn substrate 1 
LATS1                 0.015   LATS homolog 1 
WNK2                  0.015   WNK lysine deficient protein kinase 2 
HIVEP3                0.015   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.015   human immunodeficiency virus type I enhancer bindin...
SIK2                  0.013   SNF1-like kinase 2 
SUPT5H                0.013   suppressor of Ty 5 homolog isoform b 
SUPT5H                0.013   suppressor of Ty 5 homolog isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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