Guide to the Human Genome
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Name: LOC283710 Sequence: fasta or formatted (134aa) NCBI GI: 169208029
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         14           2
 C cysteine            2.2          3           2
 D aspartate           3.0          4           2
 E glutamate           4.5          6           1
 F phenylalanine       3.0          4           1
 G glycine            10.4         14           2
 H histidine           6.0          8           1
 I isoleucine          3.0          4           1
 K lysine              1.5          2           1
 L leucine             3.7          5           1
 M methionine          3.7          5           1
 N asparagine          0.7          1           1
 P proline            17.9         24           4
 Q glutamine           6.0          8           2
 R arginine            6.7          9           2
 S serine              7.5         10           1
 T threonine           6.7          9           2
 V valine              1.5          2           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
FOXJ2                 0.063   forkhead box J2 
SYN1                  0.056   synapsin I isoform Ib 
FLJ22184              0.052   PREDICTED: hypothetical protein FLJ22184 
SYN1                  0.052   synapsin I isoform Ia 
HCN4                  0.049   hyperpolarization activated cyclic nucleotide-gated p...
CASKIN2               0.045   cask-interacting protein 2 isoform b 
CASKIN2               0.045   cask-interacting protein 2 isoform a 
ZFPM1                 0.045   zinc finger protein, multitype 1 
CPSF6                 0.045   cleavage and polyadenylation specific factor 6, 68 ...
WIPF1                 0.045   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.045   WAS/WASL interacting protein family, member 1 
NACA                  0.045   nascent polypeptide-associated complex alpha subuni...
SFPQ                  0.045   splicing factor proline/glutamine rich (polypyrimidin...
CEL                   0.041   carboxyl ester lipase precursor 
LCP2                  0.041   lymphocyte cytosolic protein 2 
LOC100288963          0.041   PREDICTED: hypothetical protein XP_002342546 
MAPK1IP1L             0.041   MAPK-interacting and spindle-stabilizing protein [Ho...
CCDC85A               0.041   coiled-coil domain containing 85A 
FLJ22184              0.037   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.037   PREDICTED: hypothetical protein LOC80164 
LOC100128398          0.037   PREDICTED: hypothetical protein 
LOC100134017          0.037   PREDICTED: hypothetical protein 
LOC100128398          0.037   PREDICTED: hypothetical protein 
LOC100128398          0.037   PREDICTED: hypothetical protein 
WASF2                 0.037   WAS protein family, member 2 
SAMD1                 0.037   sterile alpha motif domain containing 1 
DAZAP1                0.037   DAZ associated protein 1 isoform b 
TTBK2                 0.037   tau tubulin kinase 2 
WAS                   0.034   Wiskott-Aldrich syndrome protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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