Guide to the Human Genome
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Name: TTC5 Sequence: fasta or formatted (440aa) NCBI GI: 226498382
Description:

tetratricopeptide repeat domain 5

Referenced in:

Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         32           3
 C cysteine            1.4          6           1
 D aspartate           4.8         21           1
 E glutamate           7.7         34           4
 F phenylalanine       2.3         10           1
 G glycine             6.1         27           1
 H histidine           3.0         13           2
 I isoleucine          1.8          8           1
 K lysine              6.8         30           2
 L leucine            11.6         51           3
 M methionine          2.3         10           2
 N asparagine          2.7         12           1
 P proline             4.5         20           1
 Q glutamine           7.0         31           2
 R arginine            4.1         18           1
 S serine              9.1         40           3
 T threonine           4.3         19           2
 V valine              8.9         39           2
 W tryptophan          1.1          5           1
 Y tyrosine            3.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetratricopeptide repeat domain 5 
OGT                   0.034   O-linked GlcNAc transferase isoform 2 
OGT                   0.034   O-linked GlcNAc transferase isoform 1 
UNC45A                0.018   smooth muscle cell associated protein-1 isoform 3 [H...
UNC45A                0.018   smooth muscle cell associated protein-1 isoform 2 [H...
FAM184A               0.018   hypothetical protein LOC79632 isoform 2 
FAM184A               0.018   hypothetical protein LOC79632 isoform 1 
TTC28                 0.016   tetratricopeptide repeat domain 28 
TTC7B                 0.015   tetratricopeptide repeat domain 7B 
STIP1                 0.012   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
TRAK2                 0.012   trafficking protein, kinesin binding 2 
TMTC4                 0.012   transmembrane and tetratricopeptide repeat containi...
TMTC4                 0.012   transmembrane and tetratricopeptide repeat containi...
NFKBIL2               0.012   NF-kappa-B inhibitor-like protein 2 
KDM6A                 0.012   ubiquitously transcribed tetratricopeptide repeat, ...
TMTC1                 0.012   transmembrane and tetratricopeptide repeat containin...
TTC7A                 0.011   tetratricopeptide repeat domain 7A 
UTY                   0.011   tetratricopeptide repeat protein isoform 3 
UTY                   0.011   tetratricopeptide repeat protein isoform 1 
UTY                   0.011   tetratricopeptide repeat protein isoform 2 
GOLSYN                0.011   Golgi-localized syntaphilin-related protein isoform...
GOLSYN                0.011   Golgi-localized syntaphilin-related protein isoform...
GOLSYN                0.011   Golgi-localized syntaphilin-related protein isoform...
GOLSYN                0.011   Golgi-localized syntaphilin-related protein isoform...
GOLSYN                0.011   Golgi-localized syntaphilin-related protein isoform...
GOLSYN                0.011   Golgi-localized syntaphilin-related protein isoform...
GOLSYN                0.011   Golgi-localized syntaphilin-related protein isoform...
GOLSYN                0.011   Golgi-localized syntaphilin-related protein isoform...
GOLSYN                0.011   Golgi-localized syntaphilin-related protein isoform...
GOLSYN                0.011   Golgi-localized syntaphilin-related protein isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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