Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 209413754
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209413754 synapsin III isoform IIIc [Homo sapiens]
(444 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209413754 synapsin III isoform IIIc [Homo sapiens] 896 0.0
gi|209413752 synapsin III isoform IIIa [Homo sapiens] 886 0.0
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 880 0.0
gi|19924103 synapsin II isoform IIa [Homo sapiens] 572 e-163
gi|19924101 synapsin II isoform IIb [Homo sapiens] 571 e-163
gi|19924099 synapsin I isoform Ia [Homo sapiens] 543 e-155
gi|19924097 synapsin I isoform Ib [Homo sapiens] 543 e-155
gi|164663810 ribosomal modification protein rimK-like family mem... 39 0.007
gi|91208420 bassoon protein [Homo sapiens] 38 0.021
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 38 0.021
gi|58530845 zyxin [Homo sapiens] 37 0.028
gi|4508047 zyxin [Homo sapiens] 37 0.028
gi|56549696 E1A binding protein p400 [Homo sapiens] 35 0.10
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 35 0.14
gi|4826964 UV excision repair protein RAD23 homolog A [Homo sapi... 35 0.18
gi|4503493 early growth response 1 [Homo sapiens] 34 0.31
gi|50428940 mediator complex subunit 25 [Homo sapiens] 34 0.31
gi|149363676 hypothetical protein LOC404770 [Homo sapiens] 34 0.31
gi|223468617 family with sequence similarity 75, member C1 [Homo... 33 0.52
gi|166999783 FBJ murine osteosarcoma viral oncogene homolog B is... 33 0.52
gi|166999613 FBJ murine osteosarcoma viral oncogene homolog B is... 33 0.52
gi|164565408 common-site lymphoma/leukemia guanine nucleotide ex... 33 0.52
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 33 0.68
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 33 0.68
gi|239582735 radial spoke head 4 homolog A isoform 2 [Homo sapiens] 32 0.89
gi|58219006 radial spoke head 4 homolog A isoform 1 [Homo sapiens] 32 0.89
gi|169201198 PREDICTED: hypothetical protein [Homo sapiens] 32 0.89
gi|169188531 PREDICTED: hypothetical protein [Homo sapiens] 32 0.89
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 32 0.89
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 32 0.89
>gi|209413754 synapsin III isoform IIIc [Homo sapiens]
Length = 444
Score = 896 bits (2315), Expect = 0.0
Identities = 444/444 (100%), Positives = 444/444 (100%)
Query: 1 MNFLRRRLSDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRHPQPLAASFSSPGSSLF 60
MNFLRRRLSDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRHPQPLAASFSSPGSSLF
Sbjct: 1 MNFLRRRLSDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRHPQPLAASFSSPGSSLF 60
Query: 61 SSLSSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIR 120
SSLSSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIR
Sbjct: 61 SSLSSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIR 120
Query: 121 VEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSL 180
VEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSL
Sbjct: 121 VEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSL 180
Query: 181 VIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTA 240
VIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTA
Sbjct: 181 VIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTA 240
Query: 241 PHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGS 300
PHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGS
Sbjct: 241 PHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGS 300
Query: 301 NYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGR 360
NYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGR
Sbjct: 301 NYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGR 360
Query: 361 DYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPGGTAPSPLRPWAPQIKSAKSP 420
DYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPGGTAPSPLRPWAPQIKSAKSP
Sbjct: 361 DYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPGGTAPSPLRPWAPQIKSAKSP 420
Query: 421 GQAQLGPQLGQPQPRPPPQANLSP 444
GQAQLGPQLGQPQPRPPPQANLSP
Sbjct: 421 GQAQLGPQLGQPQPRPPPQANLSP 444
>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
Length = 580
Score = 886 bits (2290), Expect = 0.0
Identities = 439/439 (100%), Positives = 439/439 (100%)
Query: 1 MNFLRRRLSDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRHPQPLAASFSSPGSSLF 60
MNFLRRRLSDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRHPQPLAASFSSPGSSLF
Sbjct: 1 MNFLRRRLSDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRHPQPLAASFSSPGSSLF 60
Query: 61 SSLSSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIR 120
SSLSSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIR
Sbjct: 61 SSLSSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIR 120
Query: 121 VEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSL 180
VEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSL
Sbjct: 121 VEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSL 180
Query: 181 VIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTA 240
VIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTA
Sbjct: 181 VIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTA 240
Query: 241 PHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGS 300
PHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGS
Sbjct: 241 PHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGS 300
Query: 301 NYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGR 360
NYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGR
Sbjct: 301 NYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGR 360
Query: 361 DYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPGGTAPSPLRPWAPQIKSAKSP 420
DYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPGGTAPSPLRPWAPQIKSAKSP
Sbjct: 361 DYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPGGTAPSPLRPWAPQIKSAKSP 420
Query: 421 GQAQLGPQLGQPQPRPPPQ 439
GQAQLGPQLGQPQPRPPPQ
Sbjct: 421 GQAQLGPQLGQPQPRPPPQ 439
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 880 bits (2274), Expect = 0.0
Identities = 438/439 (99%), Positives = 438/439 (99%), Gaps = 1/439 (0%)
Query: 1 MNFLRRRLSDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRHPQPLAASFSSPGSSLF 60
MNFLRRRLSDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRHPQPLAASFSSPGSSLF
Sbjct: 1 MNFLRRRLSDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRHPQPLAASFSSPGSSLF 60
Query: 61 SSLSSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIR 120
SSLSSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIR
Sbjct: 61 SSLSSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIR 120
Query: 121 VEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSL 180
VEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVV RSFKPDFILVRQHAYSMALGEDYRSL
Sbjct: 121 VEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVV-RSFKPDFILVRQHAYSMALGEDYRSL 179
Query: 181 VIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTA 240
VIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTA
Sbjct: 180 VIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTA 239
Query: 241 PHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGS 300
PHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGS
Sbjct: 240 PHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGS 299
Query: 301 NYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGR 360
NYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGR
Sbjct: 300 NYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGR 359
Query: 361 DYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPGGTAPSPLRPWAPQIKSAKSP 420
DYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPGGTAPSPLRPWAPQIKSAKSP
Sbjct: 360 DYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPGGTAPSPLRPWAPQIKSAKSP 419
Query: 421 GQAQLGPQLGQPQPRPPPQ 439
GQAQLGPQLGQPQPRPPPQ
Sbjct: 420 GQAQLGPQLGQPQPRPPPQ 438
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 572 bits (1473), Expect = e-163
Identities = 293/475 (61%), Positives = 356/475 (74%), Gaps = 33/475 (6%)
Query: 1 MNFLRRRLSDSSFMANLPNGYMTDLQRPD---------------SSTSSP--ASPAMERR 43
MNFLRRRLSDSSF+ANLPNGYMTDLQRP+ S++++P ASP ERR
Sbjct: 2 MNFLRRRLSDSSFIANLPNGYMTDLQRPEPQQPPPPPPPGPGAASASAAPPTASPGPERR 61
Query: 44 HPQ-----PLAASFSSPGSSLFSSLSSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVID 98
P P A S GSS FSSLS A+KQ A++GL++ P P+ ++ ++LLV+D
Sbjct: 62 PPPASAPAPQPAPTPSVGSSFFSSLSQAVKQTA-ASAGLVDAPAPAPAAARKAKVLLVVD 120
Query: 99 DAHTDWSKYFHGKKVNGEIEIRVEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFK 158
+ H DW+K F GKKV G+ +I+VEQAEFSELNL A+ G VDMQV+RNGTKVV RSF+
Sbjct: 121 EPHADWAKCFRGKKVLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVV-RSFR 179
Query: 159 PDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSL 218
PDF+L+RQHA+ MA ED+R L+IG+QY GLP++NSL S+YNFC KPWVF+QL+ I+ +L
Sbjct: 180 PDFVLIRQHAFGMAENEDFRHLIIGMQYAGLPSINSLESIYNFCDKPWVFAQLVAIYKTL 239
Query: 219 GPEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAK 278
G EKFPL+EQT++PNHK M+T P FPVVVK+GHAH+GMGK+KVEN DFQDI SVVA+ +
Sbjct: 240 GGEKFPLIEQTYYPNHKEMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQ 299
Query: 279 TYATTEAFIDSKYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDS 338
TYAT E FIDSKYDIR+QKIG+NYKAYMRTSISGNWK NTGSAMLEQ+AM++RY+LWVD+
Sbjct: 300 TYATAEPFIDSKYDIRVQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDT 359
Query: 339 CSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQL-- 396
CSEMFGGLDICAVKAVH KDG+DYI EVMD SMPLIGEH EDRQL+ +LV+SKM+QL
Sbjct: 360 CSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITELVISKMNQLLS 419
Query: 397 PMPGGTAPSPLRPWAPQIKSAKSPGQAQLGPQL-------GQPQPRPPPQANLSP 444
P + PL PQ + K P ++ PQ GQPQ PP L P
Sbjct: 420 RTPALSPQRPLTTQQPQSGTLKDPDSSKTPPQRPPPQGGPGQPQGMQPPGKVLPP 474
>gi|19924101 synapsin II isoform IIb [Homo sapiens]
Length = 478
Score = 571 bits (1471), Expect = e-163
Identities = 291/466 (62%), Positives = 354/466 (75%), Gaps = 32/466 (6%)
Query: 1 MNFLRRRLSDSSFMANLPNGYMTDLQRPD---------------SSTSSP--ASPAMERR 43
MNFLRRRLSDSSF+ANLPNGYMTDLQRP+ S++++P ASP ERR
Sbjct: 2 MNFLRRRLSDSSFIANLPNGYMTDLQRPEPQQPPPPPPPGPGAASASAAPPTASPGPERR 61
Query: 44 HPQ-----PLAASFSSPGSSLFSSLSSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVID 98
P P A S GSS FSSLS A+KQ A++GL++ P P+ ++ ++LLV+D
Sbjct: 62 PPPASAPAPQPAPTPSVGSSFFSSLSQAVKQTA-ASAGLVDAPAPAPAAARKAKVLLVVD 120
Query: 99 DAHTDWSKYFHGKKVNGEIEIRVEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFK 158
+ H DW+K F GKKV G+ +I+VEQAEFSELNL A+ G VDMQV+RNGTKVV RSF+
Sbjct: 121 EPHADWAKCFRGKKVLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVV-RSFR 179
Query: 159 PDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSL 218
PDF+L+RQHA+ MA ED+R L+IG+QY GLP++NSL S+YNFC KPWVF+QL+ I+ +L
Sbjct: 180 PDFVLIRQHAFGMAENEDFRHLIIGMQYAGLPSINSLESIYNFCDKPWVFAQLVAIYKTL 239
Query: 219 GPEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAK 278
G EKFPL+EQT++PNHK M+T P FPVVVK+GHAH+GMGK+KVEN DFQDI SVVA+ +
Sbjct: 240 GGEKFPLIEQTYYPNHKEMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQ 299
Query: 279 TYATTEAFIDSKYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDS 338
TYAT E FIDSKYDIR+QKIG+NYKAYMRTSISGNWK NTGSAMLEQ+AM++RY+LWVD+
Sbjct: 300 TYATAEPFIDSKYDIRVQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDT 359
Query: 339 CSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQL-- 396
CSEMFGGLDICAVKAVH KDG+DYI EVMD SMPLIGEH EDRQL+ +LV+SKM+QL
Sbjct: 360 CSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITELVISKMNQLLS 419
Query: 397 PMPGGTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQANL 442
P + PL PQ + K P ++ PQ RPPPQ L
Sbjct: 420 RTPALSPQRPLTTQQPQSGTLKDPDSSKTPPQ------RPPPQGCL 459
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 543 bits (1400), Expect = e-155
Identities = 285/481 (59%), Positives = 353/481 (73%), Gaps = 38/481 (7%)
Query: 1 MNFLRRRLSDSSFMANLPNGYMTDLQRPD-----------SSTSSPASPAMERRHPQPLA 49
MN+LRRRLSDS+FMANLPNGYMTDLQRP +T P + ER A
Sbjct: 1 MNYLRRRLSDSNFMANLPNGYMTDLQRPQPPPPPPGAHSPGATPGPGTATAERSSGVAPA 60
Query: 50 ASFSSP------GSSLFSSLSSAMKQAPQATSGLM-EPPGPSTPIVQR----PRILLVID 98
AS ++P G FSSLS+A+KQ A + E G + R R+LLVID
Sbjct: 61 ASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAASRVLLVID 120
Query: 99 DAHTDWSKYFHGKKVNGEIEIRVEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFK 158
+ HTDW+KYF GKK++GEI+I+VEQAEFS+LNL A+ GG VDM+V+RNG KVV RS K
Sbjct: 121 EPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVV-RSLK 179
Query: 159 PDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSL 218
PDF+L+RQHA+SMA DYRSLVIGLQY G+P+VNSL+SVYNFC KPWVF+Q++++ L
Sbjct: 180 PDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKL 239
Query: 219 GPEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAK 278
G E+FPL++QTF+PNHK M+++ +PVVVK+GHAH+GMGK+KV+NQ DFQDI SVVA+ K
Sbjct: 240 GTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTK 299
Query: 279 TYATTEAFIDSKYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDS 338
TYAT E FID+KYD+R+QKIG NYKAYMRTS+SGNWK NTGSAMLEQ+AM++RY+LWVD+
Sbjct: 300 TYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDT 359
Query: 339 CSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQ-LP 397
CSE+FGGLDICAV+A+H KDGRD+IIEV+ SSMPLIG+H +ED+QL+ +LVV+KM+Q LP
Sbjct: 360 CSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMAQALP 419
Query: 398 -------MPG----GTAPSP-LRPWAPQI--KSAKSPGQAQLGPQLGQPQPRPPPQANLS 443
PG G PSP P Q + A P Q + PQ G PQP P PQ
Sbjct: 420 RQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGP 479
Query: 444 P 444
P
Sbjct: 480 P 480
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 543 bits (1400), Expect = e-155
Identities = 285/481 (59%), Positives = 353/481 (73%), Gaps = 38/481 (7%)
Query: 1 MNFLRRRLSDSSFMANLPNGYMTDLQRPD-----------SSTSSPASPAMERRHPQPLA 49
MN+LRRRLSDS+FMANLPNGYMTDLQRP +T P + ER A
Sbjct: 1 MNYLRRRLSDSNFMANLPNGYMTDLQRPQPPPPPPGAHSPGATPGPGTATAERSSGVAPA 60
Query: 50 ASFSSP------GSSLFSSLSSAMKQAPQATSGLM-EPPGPSTPIVQR----PRILLVID 98
AS ++P G FSSLS+A+KQ A + E G + R R+LLVID
Sbjct: 61 ASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAASRVLLVID 120
Query: 99 DAHTDWSKYFHGKKVNGEIEIRVEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFK 158
+ HTDW+KYF GKK++GEI+I+VEQAEFS+LNL A+ GG VDM+V+RNG KVV RS K
Sbjct: 121 EPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVV-RSLK 179
Query: 159 PDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSL 218
PDF+L+RQHA+SMA DYRSLVIGLQY G+P+VNSL+SVYNFC KPWVF+Q++++ L
Sbjct: 180 PDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKL 239
Query: 219 GPEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAK 278
G E+FPL++QTF+PNHK M+++ +PVVVK+GHAH+GMGK+KV+NQ DFQDI SVVA+ K
Sbjct: 240 GTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTK 299
Query: 279 TYATTEAFIDSKYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDS 338
TYAT E FID+KYD+R+QKIG NYKAYMRTS+SGNWK NTGSAMLEQ+AM++RY+LWVD+
Sbjct: 300 TYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDT 359
Query: 339 CSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQ-LP 397
CSE+FGGLDICAV+A+H KDGRD+IIEV+ SSMPLIG+H +ED+QL+ +LVV+KM+Q LP
Sbjct: 360 CSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMAQALP 419
Query: 398 -------MPG----GTAPSP-LRPWAPQI--KSAKSPGQAQLGPQLGQPQPRPPPQANLS 443
PG G PSP P Q + A P Q + PQ G PQP P PQ
Sbjct: 420 RQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGP 479
Query: 444 P 444
P
Sbjct: 480 P 480
>gi|164663810 ribosomal modification protein rimK-like family member
A [Homo sapiens]
Length = 391
Score = 39.3 bits (90), Expect = 0.007
Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 8/211 (3%)
Query: 159 PDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSL 218
PD +LVR S+ D +++ L+ G VN S+ N +K W F +L H +
Sbjct: 67 PDVVLVRVPTPSVQSDSDI-TVLRHLEKLGCRLVNRPQSILNCINKFWTFQELAG--HGV 123
Query: 219 G-PEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA 277
P+ F F +PVVVK H G ++ DI ++
Sbjct: 124 PMPDTFSYGGHEDFSKMIDEAEPLGYPVVVKSTRGHRGKAVFLARDKHHLSDICHLIRHD 183
Query: 278 KTYATTEAFIDSK-YDIRIQKIGSN-YKAYMRTSISGNWKANTG-SAMLEQVAMTERYRL 334
Y + +S DIR+ +G + +R S G ++N + + +TE+ +
Sbjct: 184 VPYLFQKYVKESHGKDIRVVVVGGQVIGSMLRCSTDGRMQSNCSLGGVGVKCPLTEQGKQ 243
Query: 335 WVDSCSEMFGGLDICAVKAVHSKDGRDYIIE 365
S + G+D C + + DG + E
Sbjct: 244 LAIQVSNIL-GMDFCGIDLLIMDDGSFVVCE 273
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 37.7 bits (86), Expect = 0.021
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 15 ANLPNGYMTDLQRPDSSTSSPASPAMERRHPQPLAASFSSPGSSLFSSLSSAMKQAPQAT 74
A LP GYMT PASPA R P P + + S S ++ S + PQA
Sbjct: 1391 AGLPRGYMT-----------PASPAGSERSPSPSSTAHSYGHSPTTANYGSQTEDLPQAP 1439
Query: 75 SGL 77
SGL
Sbjct: 1440 SGL 1442
Score = 30.8 bits (68), Expect = 2.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 399 PGGTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPP 437
PGG P + + S P QA P++G+ P+PP
Sbjct: 269 PGGPQPGSRQAETARATSVPGPAQAAAPPEVGRVSPQPP 307
Score = 30.4 bits (67), Expect = 3.4
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 391 SKMSQLPMPGGTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQANLSP 444
+K S LP PLR P + + P +P P+PPP+ +P
Sbjct: 577 TKASPLPSKASPQAKPLRASEPSKTPSSVQEKKTRVPTKAEPMPKPPPETTPTP 630
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 37.7 bits (86), Expect = 0.021
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 365 EVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPG---GTAPSPLRPWAPQIKSAKSPG 421
E++D + E ED + + +L ++ LP P G P+P RP PQ ++ +
Sbjct: 476 ELLDKMLADDAEAGAEDEKEVEELKKQGINPLPKPPPGVGLLPTPPRPPGPQAPTSPNGR 535
Query: 422 QAQLGPQLGQPQPRPPP 438
Q GP P P PPP
Sbjct: 536 PMQGGPPPPPPPPPPPP 552
>gi|58530845 zyxin [Homo sapiens]
Length = 572
Score = 37.4 bits (85), Expect = 0.028
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 20/63 (31%)
Query: 391 SKMSQLPMPGGTAPSPLRPWAPQIKSAKSPGQAQLGPQLG-----------QPQPRPPPQ 439
SK S P GGTAP P PW KSP +Q PQ+ QPQP+P PQ
Sbjct: 183 SKSSTKPAAGGTAPLP--PW-------KSPSSSQPLPQVPAPAQSQTQFHVQPQPQPKPQ 233
Query: 440 ANL 442
L
Sbjct: 234 VQL 236
>gi|4508047 zyxin [Homo sapiens]
Length = 572
Score = 37.4 bits (85), Expect = 0.028
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 20/63 (31%)
Query: 391 SKMSQLPMPGGTAPSPLRPWAPQIKSAKSPGQAQLGPQLG-----------QPQPRPPPQ 439
SK S P GGTAP P PW KSP +Q PQ+ QPQP+P PQ
Sbjct: 183 SKSSTKPAAGGTAPLP--PW-------KSPSSSQPLPQVPAPAQSQTQFHVQPQPQPKPQ 233
Query: 440 ANL 442
L
Sbjct: 234 VQL 236
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 35.4 bits (80), Expect = 0.10
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 373 LIGEHVEEDRQLMADLVVSK---MSQLPMPGGTAPSPLRPWAPQIKSAKSPG-QAQLGPQ 428
L E + ++++ +AD ++ ++Q P P P P + P + ++ G Q GP
Sbjct: 2480 LRAERIAKEKKALADQQKAQQPAVAQPPPPQPQPPPPPQQPPPPLPQPQAAGSQPPAGPP 2539
Query: 429 LGQPQPRPPPQANLSP 444
QPQP+P PQ P
Sbjct: 2540 AVQPQPQPQPQTQPQP 2555
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 35.0 bits (79), Expect = 0.14
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 28 PDSSTSSPASPAMERRHPQPLAASFS-SPGSSLFSSLSSAMKQAPQ-ATSGLMEP--PGP 83
PDS ++P + RR P+P A S + SP SL + A +Q P+ S L P PGP
Sbjct: 440 PDSPDAAPEARPRPRRRPRPPAGSPARSPAHSLGLNFGDAARQTPRHGLSALSAPGLPGP 499
Query: 84 STP 86
P
Sbjct: 500 GQP 502
>gi|4826964 UV excision repair protein RAD23 homolog A [Homo
sapiens]
Length = 363
Score = 34.7 bits (78), Expect = 0.18
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 28 PDSSTSSPASPAMERRHPQPLAASFSSPGSSLFSSLSSAMKQAPQATSGLMEPPGPS 84
P+SSTS P +P HP P A SP S SA +P++ SG + G S
Sbjct: 97 PESSTSFPPAPTSGMSHPPPAAREDKSP------SEESAPTTSPESVSGSVPSSGSS 147
>gi|4503493 early growth response 1 [Homo sapiens]
Length = 543
Score = 33.9 bits (76), Expect = 0.31
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 9 SDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRHPQPLAASFSSPGSSLF-SSLSSAM 67
S +S +++ P+ T P T+S SPA +P P+ SFSSPGSS + S + S
Sbjct: 434 SATSSLSSYPSPVATSY--PSPVTTSYPSPATTS-YPSPVPTSFSSPGSSTYPSPVHSGF 490
Query: 68 KQAPQATSGLMEPP 81
AT+ PP
Sbjct: 491 PSPSVATTYSSVPP 504
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 33.9 bits (76), Expect = 0.31
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 396 LPMPGGTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQ 439
LP+ GG+AP PL+ P +P A L QP P PPQ
Sbjct: 228 LPVGGGSAPGPLQSKQPVPLPPAAPSGATLSAAPQQPLPPVPPQ 271
>gi|149363676 hypothetical protein LOC404770 [Homo sapiens]
Length = 182
Score = 33.9 bits (76), Expect = 0.31
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 36 ASPAMERRHPQPLAASFSSPGSSLFSSLSSAMKQAPQATSGLMEPPGPS---------TP 86
ASP +HPQ LA++ SPG + +S+SS P S L+E P P TP
Sbjct: 102 ASPDPRIKHPQDLAST-PSPGP-MTTSVSSLSASQPPEPSLLLERPSPKPPALFLTHHTP 159
Query: 87 IVQRPRILLV 96
++ P +LL+
Sbjct: 160 LILWPALLLL 169
>gi|223468617 family with sequence similarity 75, member C1 [Homo
sapiens]
Length = 1188
Score = 33.1 bits (74), Expect = 0.52
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 36 ASPAMERRHPQPLAASFSSPGSSLFSSLSSAMKQAPQATSGLMEPPGPSTP 86
ASP +HPQ LA++ P + +S+SS P S L+E P P P
Sbjct: 165 ASPDPRTKHPQDLAST--PPPGPMTTSVSSLSASQPPEPSLLLERPSPEPP 213
>gi|166999783 FBJ murine osteosarcoma viral oncogene homolog B
isoform 2 [Homo sapiens]
Length = 302
Score = 33.1 bits (74), Expect = 0.52
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 51 SFSSPGSSLFSSLSSAMKQAPQATSGLMEPPGPSTPIVQRPR 92
S+S+PG S +SS ++ P +TSG PGP+ P RPR
Sbjct: 103 SYSTPGMSGYSSGGASGSGGP-STSGTTSGPGPARPARARPR 143
>gi|166999613 FBJ murine osteosarcoma viral oncogene homolog B
isoform 1 [Homo sapiens]
Length = 338
Score = 33.1 bits (74), Expect = 0.52
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 51 SFSSPGSSLFSSLSSAMKQAPQATSGLMEPPGPSTPIVQRPR 92
S+S+PG S +SS ++ P +TSG PGP+ P RPR
Sbjct: 103 SYSTPGMSGYSSGGASGSGGP-STSGTTSGPGPARPARARPR 143
>gi|164565408 common-site lymphoma/leukemia guanine nucleotide
exchange factor [Homo sapiens]
Length = 1386
Score = 33.1 bits (74), Expect = 0.52
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 369 SSMPLIGEHVEE-DRQLMADLVVSKMSQLPMPGGTAPSPLR-PW--APQIKSAKSPGQAQ 424
SS L+G + R L A + +++ PGG AP+ R W AP +++ P Q
Sbjct: 1265 SSRQLLGPNAAALSRYLAASYISQSLARRQGPGGGAPAASRGSWSSAPTSRASSPPPQ-- 1322
Query: 425 LGPQLGQPQPRPPPQANLS 443
PQP PPP LS
Sbjct: 1323 -------PQPPPPPARRLS 1334
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 32.7 bits (73), Expect = 0.68
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 30 SSTSSPASPAMERRHPQPLAASFSSPGSSLFSSLSSAMKQAPQATSGLMEPPGP-STPIV 88
+S P PA P P + +S SS SS SS+ A ++S P P S P
Sbjct: 61 TSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPAS 120
Query: 89 QRPRIL 94
PR+L
Sbjct: 121 SPPRVL 126
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 32.7 bits (73), Expect = 0.68
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 30 SSTSSPASPAMERRHPQPLAASFSSPGSSLFSSLSSAMKQAPQATSGLMEPPGP-STPIV 88
+S P PA P P + +S SS SS SS+ A ++S P P S P
Sbjct: 61 TSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPAS 120
Query: 89 QRPRIL 94
PR+L
Sbjct: 121 SPPRVL 126
>gi|239582735 radial spoke head 4 homolog A isoform 2 [Homo sapiens]
Length = 600
Score = 32.3 bits (72), Expect = 0.89
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 408 RPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQANLSP 444
RPW+PQ + AK+P GP+ P P P + + SP
Sbjct: 59 RPWSPQSR-AKTPLGGPAGPETSSPAPVSPREPSSSP 94
>gi|58219006 radial spoke head 4 homolog A isoform 1 [Homo sapiens]
Length = 716
Score = 32.3 bits (72), Expect = 0.89
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 408 RPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQANLSP 444
RPW+PQ + AK+P GP+ P P P + + SP
Sbjct: 59 RPWSPQSR-AKTPLGGPAGPETSSPAPVSPREPSSSP 94
>gi|169201198 PREDICTED: hypothetical protein [Homo sapiens]
Length = 105
Score = 32.3 bits (72), Expect = 0.89
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 30 SSTSSPASPAMERRHPQPLAASFSSPGSSLFSSLSSAMKQAPQATSGLMEPPGPSTPIVQ 89
S + PA+PA HP PL +PG+S +QAP A G PP P +Q
Sbjct: 43 SERAGPAAPAPST-HPTPLPLPKPTPGAS---------RQAPAANPGKGTPPSGLHPHLQ 92
Query: 90 RP 91
P
Sbjct: 93 LP 94
>gi|169188531 PREDICTED: hypothetical protein [Homo sapiens]
Length = 105
Score = 32.3 bits (72), Expect = 0.89
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 30 SSTSSPASPAMERRHPQPLAASFSSPGSSLFSSLSSAMKQAPQATSGLMEPPGPSTPIVQ 89
S + PA+PA HP PL +PG+S +QAP A G PP P +Q
Sbjct: 43 SERAGPAAPAPST-HPTPLPLPKPTPGAS---------RQAPAANPGKGTPPSGLHPHLQ 92
Query: 90 RP 91
P
Sbjct: 93 LP 94
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 32.3 bits (72), Expect = 0.89
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 396 LPMPGGTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQP 434
+P PGG PSP P A Q +A PG + P GQP P
Sbjct: 280 VPAPGGR-PSPAPPAAAQPPAAAVPGPSVPQPAPGQPSP 317
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 32.3 bits (72), Expect = 0.89
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 396 LPMPGGTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQP 434
+P PGG PSP P A Q +A PG + P GQP P
Sbjct: 280 VPAPGGR-PSPAPPAAAQPPAAAVPGPSVPQPAPGQPSP 317
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,686,928
Number of Sequences: 37866
Number of extensions: 971156
Number of successful extensions: 6535
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 6182
Number of HSP's gapped (non-prelim): 491
length of query: 444
length of database: 18,247,518
effective HSP length: 105
effective length of query: 339
effective length of database: 14,271,588
effective search space: 4838068332
effective search space used: 4838068332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.