Guide to the Human Genome
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Name: RIMKLA Sequence: fasta or formatted (391aa) NCBI GI: 164663810
Description:

ribosomal modification protein rimK-like family member A

Referenced in:

Additional Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         21           1
 C cysteine            3.1         12           1
 D aspartate           6.1         24           2
 E glutamate           4.9         19           1
 F phenylalanine       3.3         13           1
 G glycine             8.7         34           2
 H histidine           2.6         10           2
 I isoleucine          5.6         22           2
 K lysine              4.1         16           1
 L leucine             9.7         38           2
 M methionine          3.1         12           1
 N asparagine          3.8         15           2
 P proline             5.1         20           2
 Q glutamine           5.1         20           1
 R arginine            5.9         23           2
 S serine              8.2         32           2
 T threonine           4.1         16           2
 V valine              8.7         34           4
 W tryptophan          0.5          2           1
 Y tyrosine            2.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal modification protein rimK-like family mem... 
RIMKLB                0.660   ribosomal modification protein rimK-like family mem...
SYN1                  0.033   synapsin I isoform Ia 
SYN1                  0.033   synapsin I isoform Ib 
ACACA                 0.026   acetyl-Coenzyme A carboxylase alpha isoform 2 
ACACA                 0.026   acetyl-Coenzyme A carboxylase alpha isoform 4 
ACACA                 0.026   acetyl-Coenzyme A carboxylase alpha isoform 3 
ACACA                 0.026   acetyl-Coenzyme A carboxylase alpha isoform 2 
ACACA                 0.026   acetyl-Coenzyme A carboxylase alpha isoform 1 
SYN2                  0.024   synapsin II isoform IIa 
SYN2                  0.024   synapsin II isoform IIb 
ACACB                 0.021   acetyl-Coenzyme A carboxylase beta 
SYN3                  0.018   synapsin III isoform IIIg 
SYN3                  0.018   synapsin III isoform IIIc 
SYN3                  0.018   synapsin III isoform IIIa 
MCCC1                 0.014   methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) pr...
HK1                   0.013   hexokinase 1 isoform HKI-td 
HK1                   0.013   hexokinase 1 isoform HKI 
HK1                   0.013   hexokinase 1 isoform HKI-ta/tb 
HK1                   0.013   hexokinase 1 isoform HKI-ta/tb 
HK1                   0.013   hexokinase 1 isoform HKI-R 
HKDC1                 0.010   hexokinase domain containing 1 
HISPPD2A              0.010   histidine acid phosphatase domain containing 2A iso...
HISPPD2A              0.010   histidine acid phosphatase domain containing 2A iso...
HISPPD2A              0.010   histidine acid phosphatase domain containing 2A isof...
HISPPD2A              0.010   histidine acid phosphatase domain containing 2A isof...
HK2                   0.009   hexokinase 2 
HK3                   0.008   hexokinase 3 
HISPPD1               0.008   Histidine acid phosphatase domain containing 1 [Homo...
SFRS17A               0.007   DNA segment on chromosome X and Y (unique) 155 expre...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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