Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 209364589
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209364589 acyl-Coenzyme A binding domain containing 4
isoform 1 [Homo sapiens]
(341 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209364594 acyl-Coenzyme A binding domain containing 4 isoform... 745 0.0
gi|209364589 acyl-Coenzyme A binding domain containing 4 isoform... 745 0.0
gi|209364600 acyl-Coenzyme A binding domain containing 4 isoform... 495 e-140
gi|209364592 acyl-Coenzyme A binding domain containing 4 isoform... 369 e-102
gi|13376029 acyl-Coenzyme A binding domain containing 4 isoform ... 369 e-102
gi|109689720 acyl-Coenzyme A binding domain containing 5 isoform... 149 4e-36
gi|203098629 acyl-Coenzyme A binding domain containing 5 isoform... 149 4e-36
gi|120433590 diazepam binding inhibitor isoform 3 [Homo sapiens] 73 4e-13
gi|10140853 diazepam binding inhibitor isoform 1 [Homo sapiens] 73 4e-13
gi|45643119 peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Hom... 73 4e-13
gi|120433593 diazepam binding inhibitor isoform 2 [Homo sapiens] 71 1e-12
gi|14150169 acyl-coenzyme A binding domain containing 6 [Homo sa... 61 2e-09
gi|89886362 acyl-Coenzyme A binding domain containing 7 [Homo sa... 55 7e-08
gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo sa... 50 4e-06
gi|169208924 PREDICTED: similar to hCG1652800 [Homo sapiens] 41 0.001
gi|89039114 PREDICTED: similar to hCG1652800 [Homo sapiens] 41 0.001
gi|89038414 PREDICTED: similar to diazepam binding inhibitor [Ho... 41 0.001
gi|239757110 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|193083122 translocase of outer mitochondrial membrane 40 [Hom... 39 0.005
gi|193083120 translocase of outer mitochondrial membrane 40 [Hom... 39 0.005
gi|5174723 translocase of outer mitochondrial membrane 40 [Homo ... 39 0.005
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 38 0.011
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ... 37 0.025
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 36 0.043
gi|134031945 SCO-spondin [Homo sapiens] 36 0.043
gi|122891874 keratin associated protein 5-5 [Homo sapiens] 36 0.043
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ... 36 0.057
gi|134244285 Notch homolog 3 [Homo sapiens] 35 0.074
gi|48762934 alpha 2 type I collagen [Homo sapiens] 35 0.074
gi|18641360 collectin sub-family member 12 [Homo sapiens] 35 0.074
>gi|209364594 acyl-Coenzyme A binding domain containing 4 isoform 1
[Homo sapiens]
Length = 341
Score = 745 bits (1923), Expect = 0.0
Identities = 341/341 (100%), Positives = 341/341 (100%)
Query: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG
Sbjct: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
Query: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY
Sbjct: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
Query: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQ 180
QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQ
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQ 180
Query: 181 SPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIPGTAPCPPQRKRGCGAARRGPR 240
SPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIPGTAPCPPQRKRGCGAARRGPR
Sbjct: 181 SPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIPGTAPCPPQRKRGCGAARRGPR 240
Query: 241 SWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSS 300
SWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSS
Sbjct: 241 SWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSS 300
Query: 301 CGPSSSSGSSECFGPKRGDCQWRGLCSQLRLSCCALSLPRV 341
CGPSSSSGSSECFGPKRGDCQWRGLCSQLRLSCCALSLPRV
Sbjct: 301 CGPSSSSGSSECFGPKRGDCQWRGLCSQLRLSCCALSLPRV 341
>gi|209364589 acyl-Coenzyme A binding domain containing 4 isoform 1
[Homo sapiens]
Length = 341
Score = 745 bits (1923), Expect = 0.0
Identities = 341/341 (100%), Positives = 341/341 (100%)
Query: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG
Sbjct: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
Query: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY
Sbjct: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
Query: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQ 180
QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQ
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQ 180
Query: 181 SPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIPGTAPCPPQRKRGCGAARRGPR 240
SPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIPGTAPCPPQRKRGCGAARRGPR
Sbjct: 181 SPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIPGTAPCPPQRKRGCGAARRGPR 240
Query: 241 SWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSS 300
SWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSS
Sbjct: 241 SWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSS 300
Query: 301 CGPSSSSGSSECFGPKRGDCQWRGLCSQLRLSCCALSLPRV 341
CGPSSSSGSSECFGPKRGDCQWRGLCSQLRLSCCALSLPRV
Sbjct: 301 CGPSSSSGSSECFGPKRGDCQWRGLCSQLRLSCCALSLPRV 341
>gi|209364600 acyl-Coenzyme A binding domain containing 4 isoform 3
[Homo sapiens]
Length = 268
Score = 495 bits (1274), Expect = e-140
Identities = 240/277 (86%), Positives = 242/277 (87%), Gaps = 20/277 (7%)
Query: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG
Sbjct: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
Query: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY
Sbjct: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
Query: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQ 180
QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSP S
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPES----------- 169
Query: 181 SPIHPGTWTPRF--SVIPWSSWSLSWFGQSSGQHLEESVIPGTAPCPPQRKRGCGAARRG 238
+PR S + S SSGQHLEESVIPGTAPCPPQRKRGCGAARRG
Sbjct: 170 -------HSPRDLDSEVFCDSLEQLEPELSSGQHLEESVIPGTAPCPPQRKRGCGAARRG 222
Query: 239 PRSWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLS 275
PRSWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLS
Sbjct: 223 PRSWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLS 259
>gi|209364592 acyl-Coenzyme A binding domain containing 4 isoform 2
[Homo sapiens]
Length = 305
Score = 369 bits (948), Expect = e-102
Identities = 190/294 (64%), Positives = 208/294 (70%), Gaps = 13/294 (4%)
Query: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG
Sbjct: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
Query: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY
Sbjct: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
Query: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQ 180
QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSP S P
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPES----HSPRDLD 176
Query: 181 SPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIPGTAPCPPQRKRGCGAARRGPR 240
S + + + W+ + G+ P +P PP +K G + GP+
Sbjct: 177 SEVFCDSLEQLEPELVWTEQRAASGGKRD---------PRNSPVPPTKKEGLRGSPPGPQ 227
Query: 241 SWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGP 294
G + + + + ++ + P P + P P PLG GP
Sbjct: 228 ELDVWLLGTVRALQESMQEVQARVQSLESMPRPPEQRPQPRPSARPWPLGLPGP 281
>gi|13376029 acyl-Coenzyme A binding domain containing 4 isoform 2
[Homo sapiens]
Length = 305
Score = 369 bits (948), Expect = e-102
Identities = 190/294 (64%), Positives = 208/294 (70%), Gaps = 13/294 (4%)
Query: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG
Sbjct: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
Query: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY
Sbjct: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
Query: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQ 180
QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSP S P
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPES----HSPRDLD 176
Query: 181 SPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIPGTAPCPPQRKRGCGAARRGPR 240
S + + + W+ + G+ P +P PP +K G + GP+
Sbjct: 177 SEVFCDSLEQLEPELVWTEQRAASGGKRD---------PRNSPVPPTKKEGLRGSPPGPQ 227
Query: 241 SWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGP 294
G + + + + ++ + P P + P P PLG GP
Sbjct: 228 ELDVWLLGTVRALQESMQEVQARVQSLESMPRPPEQRPQPRPSARPWPLGLPGP 281
>gi|109689720 acyl-Coenzyme A binding domain containing 5 isoform 2
[Homo sapiens]
Length = 490
Score = 149 bits (376), Expect = 4e-36
Identities = 66/113 (58%), Positives = 89/113 (78%), Gaps = 4/113 (3%)
Query: 13 QKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDA 72
+ +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 9 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 68
Query: 73 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLYQVIPD 125
W+SLG M++EEAM AY+ EMK K+I+T+P+ E E++ P Y+++ D
Sbjct: 69 WSSLGDMTKEEAMIAYVEEMK----KIIETMPMTEKVEELLRVIGPFYEIVED 117
>gi|203098629 acyl-Coenzyme A binding domain containing 5 isoform 1
[Homo sapiens]
Length = 525
Score = 149 bits (376), Expect = 4e-36
Identities = 66/113 (58%), Positives = 89/113 (78%), Gaps = 4/113 (3%)
Query: 13 QKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDA 72
+ +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 44 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 103
Query: 73 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLYQVIPD 125
W+SLG M++EEAM AY+ EMK K+I+T+P+ E E++ P Y+++ D
Sbjct: 104 WSSLGDMTKEEAMIAYVEEMK----KIIETMPMTEKVEELLRVIGPFYEIVED 152
>gi|120433590 diazepam binding inhibitor isoform 3 [Homo sapiens]
Length = 87
Score = 72.8 bits (177), Expect = 4e-13
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 13 QKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDA 72
Q +F+ A +++L +PS EEML Y +YKQAT+G RPG D G+ KWDA
Sbjct: 3 QAEFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDA 58
Query: 73 WNSLGKMSREEAMSAYITEMKLVAQK 98
WN L S+E+AM AYI +++ + +K
Sbjct: 59 WNELKGTSKEDAMKAYINKVEELKKK 84
>gi|10140853 diazepam binding inhibitor isoform 1 [Homo sapiens]
Length = 104
Score = 72.8 bits (177), Expect = 4e-13
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 7 SPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIG 66
+P + +F+ A +++L +PS EEML Y +YKQAT+G RPG D G
Sbjct: 14 NPGTGTEAEFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTG 69
Query: 67 RYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 98
+ KWDAWN L S+E+AM AYI +++ + +K
Sbjct: 70 KAKWDAWNELKGTSKEDAMKAYINKVEELKKK 101
>gi|45643119 peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Homo
sapiens]
Length = 364
Score = 72.8 bits (177), Expect = 4e-13
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 13 QKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDA 72
QK F+ +++ ++ L K+ P E L+ Y+ YKQAT GPC +P+PG +D I + KWDA
Sbjct: 10 QKDFENSMNQVKLLKKD----PGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDA 65
Query: 73 WNSLGKMSREEAMSAYI 89
WN+LG + +E A Y+
Sbjct: 66 WNALGSLPKEAARQNYV 82
>gi|120433593 diazepam binding inhibitor isoform 2 [Homo sapiens]
Length = 88
Score = 71.2 bits (173), Expect = 1e-12
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 15 QFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWN 74
+F+ A +++L +PS EEML Y +YKQAT+G RPG D G+ KWDAWN
Sbjct: 6 EFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWN 61
Query: 75 SLGKMSREEAMSAYITEMKLVAQK 98
L S+E+AM AYI +++ + +K
Sbjct: 62 ELKGTSKEDAMKAYINKVEELKKK 85
>gi|14150169 acyl-coenzyme A binding domain containing 6 [Homo
sapiens]
Length = 282
Score = 60.8 bits (146), Expect = 2e-09
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 6 ESPEPDCQKQ-FQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDP 64
E E C + F+ A + +Q L + S E++L Y+ YKQ +G C P+P F+D
Sbjct: 35 EIEETSCLAELFEKAAAHLQGLIQVASR----EQLLYLYARYKQVKVGNCNTPKPSFFDF 90
Query: 65 IGRYKWDAWNSLGKMSREEAMSAYITEMK 93
G+ KW+AW +LG S +AM YI +K
Sbjct: 91 EGKQKWEAWKALGDSSPSQAMQEYIAVVK 119
>gi|89886362 acyl-Coenzyme A binding domain containing 7 [Homo
sapiens]
Length = 88
Score = 55.5 bits (132), Expect = 7e-08
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 13 QKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDA 72
Q F A ++ L RP E+ Y YKQA +G + PG D G+ KW+A
Sbjct: 4 QADFDRAAEDVRKLKA----RPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEA 59
Query: 73 WNSLGKMSREEAMSAYITEMKLVAQK 98
WN +S E+A SAYI++ K + +K
Sbjct: 60 WNLKKGLSTEDATSAYISKAKELIEK 85
>gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo
sapiens]
Length = 528
Score = 49.7 bits (117), Expect = 4e-06
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 31 SYRPSYEEMLRFYSYYKQATMGPC---LVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSA 87
++ P+YEE L+ + +KQ MGP P GF+D +G + W +LG MS+E+AM
Sbjct: 101 AFHPTYEEKLKLVALHKQVLMGPYNPDTCPEVGFFDVLGNDRRREWAALGNMSKEDAMVE 160
Query: 88 YI 89
++
Sbjct: 161 FV 162
>gi|169208924 PREDICTED: similar to hCG1652800 [Homo sapiens]
Length = 88
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 33 RPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEM 92
RP EE+ Y YKQA +G + + G+ KW+A N +S E+ M A+I++
Sbjct: 20 RPDDEELKELYGLYKQAVIGNINIECSEMLELKGKAKWEAQNPQKGLSEEDMMRAFISKA 79
Query: 93 KLVAQK 98
+ + +K
Sbjct: 80 EELIEK 85
>gi|89039114 PREDICTED: similar to hCG1652800 [Homo sapiens]
Length = 88
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 33 RPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEM 92
RP EE+ Y YKQA +G + + G+ KW+A N +S E+ M A+I++
Sbjct: 20 RPDDEELKELYGLYKQAVIGNINIECSEMLELKGKAKWEAQNPQKGLSEEDMMRAFISKA 79
Query: 93 KLVAQK 98
+ + +K
Sbjct: 80 EELIEK 85
>gi|89038414 PREDICTED: similar to diazepam binding inhibitor
[Homo sapiens]
Length = 88
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 33 RPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEM 92
RP EE+ Y YKQA +G + + G+ KW+A N +S E+ M A+I++
Sbjct: 20 RPDDEELKELYGLYKQAVIGNINIECSEMLELKGKAKWEAQNPQKGLSEEDMMRAFISKA 79
Query: 93 KLVAQK 98
+ + +K
Sbjct: 80 EELIEK 85
>gi|239757110 PREDICTED: hypothetical protein [Homo sapiens]
Length = 192
Score = 39.3 bits (90), Expect = 0.005
Identities = 50/173 (28%), Positives = 65/173 (37%), Gaps = 26/173 (15%)
Query: 162 PAPPSPASLWAVTLPTPPQSPIHPGTW-----TPRFSVIPWSSWSLSWFGQSSGQHLEES 216
P P PAS P Q+ HP W P P +S SW S+ QH E
Sbjct: 12 PTPGGPASARRAHSGRPHQARRHPAAWGLPVRRPSHPPRPTTS---SWANGSNRQHPAEL 68
Query: 217 VIPGTAPCPPQRKRGCGAARRGPRSWT-------CGCWGQFEHYRRACR----RCRRGCR 265
+ A PP +GC A PR W G + +RR CR RRGC
Sbjct: 69 SVQLPANPPPGLNQGCIRAASAPR-WVPTLTVPQATLPGGSQGHRR-CRGEGEGQRRGCV 126
Query: 266 AWRACPGPLS----RGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFG 314
+ P P G +P P P R R + + G ++S+GS+ G
Sbjct: 127 EKQPRPTPTPACELTGLAPAPPT-PPPAWWRWARTGTRAMGGAASTGSAPTAG 178
>gi|193083122 translocase of outer mitochondrial membrane 40 [Homo
sapiens]
Length = 361
Score = 39.3 bits (90), Expect = 0.005
Identities = 42/115 (36%), Positives = 50/115 (43%), Gaps = 28/115 (24%)
Query: 147 GDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQSPIHPGTWTPRFSVIPWSSWSLSWFG 206
G+V A S PP P P PP+PA V LP PP SP P F++ P SL G
Sbjct: 2 GNVLAASSPPAGP--PPPPAPA---LVGLPPPPPSP-------PGFTLPPLGG-SLG-AG 47
Query: 207 QSSGQHLEESVIPGTAPCPPQRKRGCGAARRGPRSWTCGCW---GQFEHYRRACR 258
S+ + E + PG A GAA G CGC G FE R C+
Sbjct: 48 TSTSRSSERT--PGAATA-----SASGAAEDG----ACGCLPNPGTFEECHRKCK 91
>gi|193083120 translocase of outer mitochondrial membrane 40 [Homo
sapiens]
Length = 361
Score = 39.3 bits (90), Expect = 0.005
Identities = 42/115 (36%), Positives = 50/115 (43%), Gaps = 28/115 (24%)
Query: 147 GDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQSPIHPGTWTPRFSVIPWSSWSLSWFG 206
G+V A S PP P P PP+PA V LP PP SP P F++ P SL G
Sbjct: 2 GNVLAASSPPAGP--PPPPAPA---LVGLPPPPPSP-------PGFTLPPLGG-SLG-AG 47
Query: 207 QSSGQHLEESVIPGTAPCPPQRKRGCGAARRGPRSWTCGCW---GQFEHYRRACR 258
S+ + E + PG A GAA G CGC G FE R C+
Sbjct: 48 TSTSRSSERT--PGAATA-----SASGAAEDG----ACGCLPNPGTFEECHRKCK 91
>gi|5174723 translocase of outer mitochondrial membrane 40 [Homo
sapiens]
Length = 361
Score = 39.3 bits (90), Expect = 0.005
Identities = 42/115 (36%), Positives = 50/115 (43%), Gaps = 28/115 (24%)
Query: 147 GDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQSPIHPGTWTPRFSVIPWSSWSLSWFG 206
G+V A S PP P P PP+PA V LP PP SP P F++ P SL G
Sbjct: 2 GNVLAASSPPAGP--PPPPAPA---LVGLPPPPPSP-------PGFTLPPLGG-SLG-AG 47
Query: 207 QSSGQHLEESVIPGTAPCPPQRKRGCGAARRGPRSWTCGCW---GQFEHYRRACR 258
S+ + E + PG A GAA G CGC G FE R C+
Sbjct: 48 TSTSRSSERT--PGAATA-----SASGAAEDG----ACGCLPNPGTFEECHRKCK 91
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 38.1 bits (87), Expect = 0.011
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 271 PGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGPKRGDCQWRGL 325
PGP+ PGP GPLG +G + S S GP +G + GP + GL
Sbjct: 1441 PGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPPGAPAELHGL 1495
Score = 33.5 bits (75), Expect = 0.28
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 261 RRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGPK 316
++G R R PGP + PGP+ GP G+ GP G + G G K
Sbjct: 1038 KKGSRGERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDK 1093
Score = 31.6 bits (70), Expect = 1.1
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 271 PGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGPKRGD 319
PGP PGP+ G LG GP + G S GS GP RGD
Sbjct: 1432 PGPKGDPGPPGPI---GSLGHPGPPGVAGPLGQKGSKGSPGSMGP-RGD 1476
Score = 30.8 bits (68), Expect = 1.8
Identities = 21/68 (30%), Positives = 25/68 (36%)
Query: 248 GQFEHYRRACRRCRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSS 307
G F H + G R PGP + PGP GP GS GP G +
Sbjct: 566 GDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAP 625
Query: 308 GSSECFGP 315
G+ GP
Sbjct: 626 GAKGNVGP 633
Score = 30.4 bits (67), Expect = 2.4
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 280 PGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGP--KRGDCQWRG 324
PGPV +G G RGP + G SGS GP K+G RG
Sbjct: 1000 PGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERG 1046
Score = 30.4 bits (67), Expect = 2.4
Identities = 31/98 (31%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Query: 219 PGTAPCPPQRKRGCGAARRGPRSWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLSRGR 278
PG AP PP ++ G R R G G+ R G R GP
Sbjct: 1303 PG-APGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRG 1361
Query: 279 SPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGPK 316
PGPV G LG+ G GPS G GPK
Sbjct: 1362 IPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPK 1399
>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
[Homo sapiens]
Length = 1008
Score = 37.0 bits (84), Expect = 0.025
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 120 YQVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPS--------PASLW 171
+Q P P PP RR G + + + +V+ P P+ APP+ ++L
Sbjct: 842 FQAAPRAPSPPS---RRDAGLQVSLGAAETRSVATGPMTPQAAAPPAFPEVRVRPGSALA 898
Query: 172 AVTLPTPPQSPIHPGTWTPRFSV--IPWSSWSLSWFGQSSGQHLEESVIP---GTAPCPP 226
A P P P+ +W + + ++ + G + +HLE + AP PP
Sbjct: 899 AAVAPPEPAEPVRDVSWDEKGMTWEVYGAAMEVEVLGMAIQKHLERQIEEHGRQGAPAPP 958
Query: 227 QRKRGCGAARRGP 239
AAR GP
Sbjct: 959 P------AARAGP 965
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 36.2 bits (82), Expect = 0.043
Identities = 41/141 (29%), Positives = 47/141 (33%), Gaps = 20/141 (14%)
Query: 154 EPPCLPKEPAPPSPASLWAVTLPTPPQSPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHL 213
+PP P PAPP P P PP + HPG+ R W Q
Sbjct: 37 DPP--PPRPAPPRPGEEPGNRHPPPPAARTHPGSCRARCPSPAAGGLRGPWTAAPGRQRA 94
Query: 214 EESVIPGTAPCPPQRKRGCGAARRGPRSWTCGCWGQFEHYRRACRRCRRGCRAWRACPGP 273
+E G A P+R+R ARR P S G R R P P
Sbjct: 95 DE----GAAAARPERQRVW--ARRLPGSAAAPAPG------------RDALRLPPPPPPP 136
Query: 274 LSRGRSPGPVLGHGPLGSRGP 294
R R P L GP S P
Sbjct: 137 PERPRLPPAGLAGGPADSAPP 157
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 36.2 bits (82), Expect = 0.043
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 16/103 (15%)
Query: 225 PPQRKRGCGA----ARRGPRSWTCGCWGQFEHYRRACRRCR-RGCRAWRACPGPLSRGR- 278
P ++GCGA + GP S TCG WGQ RRC G + CPGP + +
Sbjct: 1687 PSPEEQGCGAWGPWSPWGPCSRTCGPWGQ-----GRSRRCSPLGLLVLQNCPGPEHQSQA 1741
Query: 279 ---SPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGPKRG 318
+ PV G S CS G + + +C P+ G
Sbjct: 1742 CFTAACPVDGEWSTWSPWSVCSEPCRG--TMTRQRQCHSPQNG 1782
Score = 33.5 bits (75), Expect = 0.28
Identities = 31/79 (39%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 268 RACPGPLSRGR--SPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGPKRGDC----Q 321
R CPGP SP V G +R R SS S S+ G C GP G C Q
Sbjct: 3037 RPCPGPGGEWGPWSPCSVPCGGGYRNR-TRGSSRSLMEFSTCGLQPCAGPVPGMCPRDKQ 3095
Query: 322 WRGLCSQLRLSCCALSLPR 340
W C+Q SC LS PR
Sbjct: 3096 WLD-CAQGPASCAELSAPR 3113
Score = 30.0 bits (66), Expect = 3.1
Identities = 44/160 (27%), Positives = 53/160 (33%), Gaps = 42/160 (26%)
Query: 174 TLPTPPQSPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIPGTAPCPPQRKRGCG 233
+LPTPP S + PG S SL +S S P PC P R CG
Sbjct: 1532 SLPTPPASTL-PGP----------SPGSLD---TASSPLASASPAP---PCGPFEFR-CG 1573
Query: 234 AARRGPRSWTC-------------GCWGQFEHYRRACRR---C---RRGCRAWRACPGPL 274
+ PR W C GC G + C R C + C R CP
Sbjct: 1574 SGECTPRGWRCDQEEDCADGSDERGCGGPCAPHHAPCARGPHCVSPEQLCDGVRQCPD-- 1631
Query: 275 SRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFG 314
G GP G GP + C P + + C G
Sbjct: 1632 --GSDEGPDACGGLPALGGPNRTGLPC-PEYTCPNGTCIG 1668
Score = 30.0 bits (66), Expect = 3.1
Identities = 56/208 (26%), Positives = 68/208 (32%), Gaps = 54/208 (25%)
Query: 162 PAPPSPASLWAVTLPTPPQSPIHPGTWTPRFSVIPWSSWS-------------------L 202
P+P P + + P PG W P WSSWS L
Sbjct: 3861 PSPDCPGAEGSTVEPVTGL----PGGWGP------WSSWSPCSRSCTDPARPAWRSRTRL 3910
Query: 203 SWFGQSSGQHLEESV--IPGTAPCPPQRKRGCGAARRGPRSWTCGCWGQFEHYRRACR-R 259
+ G L+E +P P GCGA G SWT W +E R+C
Sbjct: 3911 CLANCTMGDPLQERPCNLPSCTELPVCPGPGCGA---GNCSWT--SWAPWEPCSRSCGVG 3965
Query: 260 CRRGCRAWRA-------CPGPLSRGRS-------PGPVLGHGPLGSRGPRCSSSSCGPSS 305
+R RA+R CP L+ + PV G S C SCG
Sbjct: 3966 QQRRLRAYRPPGPGGHWCPNILTAYQERRFCNLRACPVPGGWSRWSPWSWC-DRSCGGGQ 4024
Query: 306 SSGSSECFGP--KRGDCQWRGLCSQLRL 331
S S C P K G G Q RL
Sbjct: 4025 SLRSRSCSSPPSKNGGAPCAGERHQARL 4052
Score = 28.5 bits (62), Expect = 9.1
Identities = 37/134 (27%), Positives = 45/134 (33%), Gaps = 40/134 (29%)
Query: 239 PRSWTC---------GCWGQFEHYRRACRRCRRGCRAWRACPGPLSRGRS---PGPVLGH 286
P +WT C G + RACR R+ C GP ++ R PG +L
Sbjct: 4253 PEAWTLWSSWSDCPVSCGGGNQVRTRACRAAAPHHRS-PPCLGPDTQTRQQPCPG-LLEA 4310
Query: 287 GPLGSRGPRCSSSSCGPSSSSGSSEC------------------------FGPKRGDCQW 322
G GP S SCGP +S S C GP +C W
Sbjct: 4311 CSWGPWGP--CSRSCGPGLASRSGSCPCLMAKADPTCNSTFLHLDTQGCYSGPCPEECVW 4368
Query: 323 RGLCSQLRLSCCAL 336
S R SC L
Sbjct: 4369 SSWSSWTRCSCRVL 4382
>gi|122891874 keratin associated protein 5-5 [Homo sapiens]
Length = 237
Score = 36.2 bits (82), Expect = 0.043
Identities = 29/93 (31%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 231 GCGAARRGPRSWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLSRGRSPG-----PVLG 285
GCG+ G S GC C C GC C + G PV
Sbjct: 9 GCGSGCGGRGSGCGGCGSGCGGCGSGCGGCGSGCGGCGGCGSGCAGCGGCGSGCCVPVCC 68
Query: 286 HGPLGSRGPRCSSSSCGPSSSSGSSECFGPKRG 318
P+ P CS SSCG G C G KRG
Sbjct: 69 CKPMCCCVPACSCSSCG---KGGCGSCGGSKRG 98
>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
sapiens]
Length = 278
Score = 35.8 bits (81), Expect = 0.057
Identities = 51/197 (25%), Positives = 65/197 (32%), Gaps = 32/197 (16%)
Query: 127 PRPPETFL----RRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQSP 182
PRPP L RR WK + G A S LP+ PP P + + PP++P
Sbjct: 40 PRPPPARLPRNGRRGPLWKGRGPAGRAPAASAETALPRPREPPEPGAGPSPKRSPPPRAP 99
Query: 183 IHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIPGTAPCPPQRKR-----GCGAARR 237
P V W+S G+ G PC P +R +
Sbjct: 100 RASSLAAPEPQVGDWTSRE----GRRGG------------PCLPGARRRLFSLSVSRSSG 143
Query: 238 GPRSWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLSR-GRSPGPVLGHGPLGSRG-PR 295
PR+ +C H R RG A G +R G S P G P
Sbjct: 144 PPRARSCA-----PHPAREGMATTRGPEAGLRVSGRGARAGSSTAPTRAQASPARPGFPP 198
Query: 296 CSSSSCGPSSSSGSSEC 312
C S P+SS C
Sbjct: 199 CLRSPPCPASSRAFRSC 215
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 35.4 bits (80), Expect = 0.074
Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 10/119 (8%)
Query: 222 APCPPQRKRGCGAARRGPR-----SWTCGCWGQFEHYRRACRRCRRGCRAWRACPGPLSR 276
+PC Q + G R P ++TC C F R C R R CR + CP +
Sbjct: 1248 SPCESQPCQHGGQCRPSPGPGGGLTFTCHCAQPFWGPR--CERVARSCRELQ-CPVGVPC 1304
Query: 277 GRSPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGP--KRGDCQWRGLCSQLRLSC 333
++P P G GP C S P +S +S P G C+ L R +C
Sbjct: 1305 QQTPRGPRCACPPGLSGPSCRSFPGSPPGASNASCAAAPCLHGGSCRPAPLAPFFRCAC 1363
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 35.4 bits (80), Expect = 0.074
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 262 RGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGPK 316
+G R + GP+ +PGP HGP+G G + GPS G + GP+
Sbjct: 945 KGERGYPGNIGPVGAAGAPGP---HGPVGPAGKHGNRGETGPSGPVGPAGAVGPR 996
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 280 PGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGPKRGD 319
PGP GP G RGP S + GP+ GS GP D
Sbjct: 582 PGPA---GPRGERGPPGESGAAGPTGPIGSRGPSGPPGPD 618
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 263 GCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSS 310
G R R PG PGP+ GP G+RGP + S G + + G +
Sbjct: 877 GSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEA 924
Score = 30.0 bits (66), Expect = 3.1
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 263 GCRAWRACPGPL-SRGR--SPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGP 315
G R PGP +RG S GPV GP+GS GP + GP G+ GP
Sbjct: 220 GERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGP 275
Score = 28.9 bits (63), Expect = 6.9
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 268 RACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGPK 316
R PG R +PGP G GS GP + G + G GPK
Sbjct: 216 RGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPK 264
Score = 28.9 bits (63), Expect = 6.9
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 261 RRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFG 314
+ G R R GP+ R G V G G +GP + + GP + G G
Sbjct: 815 KEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLG 868
Score = 28.5 bits (62), Expect = 9.1
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 263 GCRAWRACPGPL-SRGRS--PGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGPK--R 317
G R PGP S+G S G GP G GP GP+ +GS+ GP R
Sbjct: 340 GARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLR 399
Query: 318 GDCQWRGL 325
G RGL
Sbjct: 400 GSPGSRGL 407
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 35.4 bits (80), Expect = 0.074
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 262 RGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGPK 316
+G + + PGP GP+ GP G RG + S S GP S GS GP+
Sbjct: 466 KGQKGEKGEPGPPGPAGERGPIGPAGPPGERGGKGSKGSQGPKGSRGSPGKPGPQ 520
Score = 30.0 bits (66), Expect = 3.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 272 GPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSSGSSECFGP 315
GP+ PG G G GS+GP+ S S G G S GP
Sbjct: 485 GPIGPAGPPGERGGKGSKGSQGPKGSRGSPGKPGPQGPSGDPGP 528
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,920,638
Number of Sequences: 37866
Number of extensions: 1161842
Number of successful extensions: 9923
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 295
Number of HSP's that attempted gapping in prelim test: 7290
Number of HSP's gapped (non-prelim): 2689
length of query: 341
length of database: 18,247,518
effective HSP length: 103
effective length of query: 238
effective length of database: 14,347,320
effective search space: 3414662160
effective search space used: 3414662160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.