Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC645877 Sequence: fasta or formatted (88aa) NCBI GI: 89039114
Description:

PREDICTED: similar to hCG1652800

Referenced in:

Additional Enzymes and Related Sequences

Other entries for this name:
alt mRNA [88aa] PREDICTED: similar to hCG1652800
alt mRNA [88aa] PREDICTED: similar to diazepam binding inhibitor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8          6           1
 C cysteine            1.1          1           1
 D aspartate           6.8          6           2
 E glutamate          14.8         13           2
 F phenylalanine       2.3          2           1
 G glycine             5.7          5           1
 H histidine           0.0          0           0
 I isoleucine          6.8          6           1
 K lysine             11.4         10           1
 L leucine            10.2          9           1
 M methionine          5.7          5           2
 N asparagine          3.4          3           1
 P proline             2.3          2           1
 Q glutamine           4.5          4           1
 R arginine            3.4          3           1
 S serine              4.5          4           1
 T threonine           2.3          2           1
 V valine              3.4          3           1
 W tryptophan          1.1          1           1
 Y tyrosine            3.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1652800 
LOC645877             1.000   PREDICTED: similar to hCG1652800 
LOC645877             1.000   PREDICTED: similar to diazepam binding inhibitor [Ho...
ACBD7                 0.717   acyl-Coenzyme A binding domain containing 7 
DBI                   0.500   diazepam binding inhibitor isoform 3 
DBI                   0.493   diazepam binding inhibitor isoform 1 
DBI                   0.487   diazepam binding inhibitor isoform 2 
PECI                  0.151   peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Hom...
ACBD4                 0.105   acyl-Coenzyme A binding domain containing 4 isoform...
ACBD4                 0.105   acyl-Coenzyme A binding domain containing 4 isoform...
ACBD4                 0.105   acyl-Coenzyme A binding domain containing 4 isoform...
ACBD4                 0.105   acyl-Coenzyme A binding domain containing 4 isoform ...
ACBD4                 0.105   acyl-Coenzyme A binding domain containing 4 isoform...
ACBD6                 0.099   acyl-coenzyme A binding domain containing 6 
ACBD5                 0.086   acyl-Coenzyme A binding domain containing 5 isoform...
ACBD5                 0.086   acyl-Coenzyme A binding domain containing 5 isoform...
DDX60                 0.033   DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 
RAI14                 0.020   retinoic acid induced 14 isoform d 
RAI14                 0.020   retinoic acid induced 14 isoform c 
RAI14                 0.020   retinoic acid induced 14 isoform b 
RAI14                 0.020   retinoic acid induced 14 isoform a 
RAI14                 0.020   retinoic acid induced 14 isoform a 
RAI14                 0.020   retinoic acid induced 14 isoform a 
PLCE1                 0.013   phospholipase C, epsilon 1 
CGN                   0.007   cingulin 
CENPE                 0.007   centromere protein E 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press