Search of human proteins with 209364542

Search of human proteins with 209364542

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|209364542 derlin 3 isoform 1 [Homo sapiens]
         (239 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|209364542 derlin 3 isoform 1 [Homo sapiens]                        483   e-137
gi|50845411 derlin 3 isoform 2 [Homo sapiens]                         419   e-118
gi|50845409 derlin 3 isoform 3 [Homo sapiens]                         417   e-117
gi|31455614 Der1-like domain family, member 2 [Homo sapiens]          345   2e-95
gi|13236516 Der1-like domain family, member 1 isoform a [Homo sa...   144   7e-35
gi|197927278 Der1-like domain family, member 1 isoform b [Homo s...   116   2e-26
gi|4502929 cannabinoid receptor 2 (macrophage) [Homo sapiens]          33   0.29 
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ...    32   0.64 
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s...    32   0.64 
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]        31   0.83 
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    31   1.1  
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]     30   1.4  
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]      30   1.8  
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                30   1.8  
gi|223717985 corticotropin releasing hormone receptor 1 isoform ...    29   3.2  
gi|223717978 corticotropin releasing hormone receptor 1 isoform ...    29   3.2  
gi|223717971 corticotropin releasing hormone receptor 1 isoform ...    29   3.2  
gi|19923245 corticotropin releasing hormone receptor 1 isoform 2...    29   3.2  
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]        29   3.2  
gi|65301139 ATPase, class II, type 9A [Homo sapiens]                   29   3.2  
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     29   4.1  
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ...    28   5.4  
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    28   5.4  
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    28   5.4  
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    28   5.4  
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s...    28   5.4  
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s...    28   5.4  
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s...    28   5.4  
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s...    28   5.4  
gi|119829187 alpha 1 type XVII collagen [Homo sapiens]                 28   5.4  

>gi|209364542 derlin 3 isoform 1 [Homo sapiens]
          Length = 239

 Score =  483 bits (1244), Expect = e-137
 Identities = 239/239 (100%), Positives = 239/239 (100%)

Query: 1   MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN 60
           MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN
Sbjct: 1   MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN 60

Query: 61  FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL 120
           FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL
Sbjct: 61  FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL 120

Query: 121 GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH 180
           GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH
Sbjct: 121 GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH 180

Query: 181 IYYFLEDVFPNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAPS 239
           IYYFLEDVFPNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAPS
Sbjct: 181 IYYFLEDVFPNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAPS 239


>gi|50845411 derlin 3 isoform 2 [Homo sapiens]
          Length = 235

 Score =  419 bits (1078), Expect = e-118
 Identities = 212/229 (92%), Positives = 214/229 (93%), Gaps = 1/229 (0%)

Query: 1   MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN 60
           MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN
Sbjct: 1   MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN 60

Query: 61  FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL 120
           FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL
Sbjct: 61  FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL 120

Query: 121 GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH 180
           GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH
Sbjct: 121 GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH 180

Query: 181 IYYFLEDVFPNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGP 229
           IYYFLEDVFPNQPGGKRLLQTPGFL L    APA     +   + Q GP
Sbjct: 181 IYYFLEDVFPNQPGGKRLLQTPGFLKLLLD-APAEDPNYLPLPEEQPGP 228


>gi|50845409 derlin 3 isoform 3 [Homo sapiens]
          Length = 205

 Score =  417 bits (1071), Expect = e-117
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN 60
           MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN
Sbjct: 1   MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN 60

Query: 61  FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL 120
           FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL
Sbjct: 61  FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL 120

Query: 121 GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH 180
           GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH
Sbjct: 121 GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH 180

Query: 181 IYYFLEDVFPNQPGGKRLLQTPGFL 205
           IYYFLEDVFPNQPGGKRLLQTPGFL
Sbjct: 181 IYYFLEDVFPNQPGGKRLLQTPGFL 205


>gi|31455614 Der1-like domain family, member 2 [Homo sapiens]
          Length = 239

 Score =  345 bits (886), Expect = 2e-95
 Identities = 162/205 (79%), Positives = 183/205 (89%)

Query: 1   MAWQGLAAEFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTN 60
           MA+Q L  E+LQ+P V+RAYT ACVLTTAAVQLEL++PFQLYFNP L+F+ FQ+WRL+TN
Sbjct: 1   MAYQSLRLEYLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITN 60

Query: 61  FLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFL 120
           FLFFGP+GF+F FNM+F++RYCRMLEEGSFRGRTADFVFMFLFGG LMTL GL  SL FL
Sbjct: 61  FLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLVFL 120

Query: 121 GQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGH 180
           GQA   MLVYVWSRR+P VR+NFFGLL FQAPFLPW LMGFSLLLGNSI+VDLLGIAVGH
Sbjct: 121 GQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGH 180

Query: 181 IYYFLEDVFPNQPGGKRLLQTPGFL 205
           IY+FLEDVFPNQPGG R+L+TP  L
Sbjct: 181 IYFFLEDVFPNQPGGIRILKTPSIL 205


>gi|13236516 Der1-like domain family, member 1 isoform a [Homo
           sapiens]
          Length = 251

 Score =  144 bits (363), Expect = 7e-35
 Identities = 73/199 (36%), Positives = 119/199 (59%), Gaps = 3/199 (1%)

Query: 10  FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFF--GP- 66
           F  +PA+TR + AA V      +L L+SP  L+  P     +FQ+WR +T   +F  GP 
Sbjct: 8   FRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATFYFPVGPG 67

Query: 67  LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFLGQALMA 126
            GF +  N+ F+++Y   LE G+F GR AD++FM LF  + + + GL   +  L   L+ 
Sbjct: 68  TGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIM 127

Query: 127 MLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLE 186
            ++YVW++ +  + V+F+    F+A +LPW ++GF+ ++G S++ +L+G  VGH+Y+FL 
Sbjct: 128 SVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLM 187

Query: 187 DVFPNQPGGKRLLQTPGFL 205
             +P   GG+  L TP FL
Sbjct: 188 FRYPMDLGGRNFLSTPQFL 206


>gi|197927278 Der1-like domain family, member 1 isoform b [Homo
           sapiens]
          Length = 231

 Score =  116 bits (291), Expect = 2e-26
 Identities = 65/189 (34%), Positives = 106/189 (56%), Gaps = 3/189 (1%)

Query: 10  FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFF--GP- 66
           F  +PA+TR + AA V      +L L+SP  L+  P     +FQ+WR +T   +F  GP 
Sbjct: 8   FRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATFYFPVGPG 67

Query: 67  LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFLGQALMA 126
            GF +  N+ F+++Y   LE G+F GR AD++FM LF  + + + GL   +  L   L+ 
Sbjct: 68  TGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIM 127

Query: 127 MLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLE 186
            ++YVW++ +  + V+F+    F+A +LPW ++GF+ ++G S  +DL G        FL 
Sbjct: 128 SVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSYPMDLGGRNFLSTPQFLY 187

Query: 187 DVFPNQPGG 195
              P++ GG
Sbjct: 188 RWLPSRRGG 196


>gi|4502929 cannabinoid receptor 2 (macrophage) [Homo sapiens]
          Length = 360

 Score = 32.7 bits (73), Expect = 0.29
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 21  TAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGPL-GFSFFFNMLFVF 79
           TA  VL T    L LLS  +     +L+    Q+ R   ++LF G L G  F  +++F  
Sbjct: 34  TAVAVLCTL---LGLLSALENVAVLYLILSSHQL-RRKPSYLFIGSLAGADFLASVVFA- 88

Query: 80  RYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL 117
             C  +    F G  +  VF+   G V MT    +GSL
Sbjct: 89  --CSFVNFHVFHGVDSKAVFLLKIGSVTMTFTASVGSL 124


>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
           sapiens]
          Length = 1691

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 18/50 (36%), Positives = 21/50 (42%)

Query: 189 FPNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
           FP   G + L  TPG  G   SK   GS   +   +  G PG  GE   P
Sbjct: 674 FPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLP 723


>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
           sapiens]
          Length = 1690

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 18/50 (36%), Positives = 21/50 (42%)

Query: 189 FPNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
           FP   G + L  TPG  G   SK   GS   +   +  G PG  GE   P
Sbjct: 673 FPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLP 722


>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
          Length = 1028

 Score = 31.2 bits (69), Expect = 0.83
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 189 FPNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
           +P  PG K    +PGF G+Q    P G       +  +G PG  GE   P
Sbjct: 339 YPGLPGCKG---SPGFDGIQGPPGPKGDPGAFGLKGEKGEPGADGEAGRP 385


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 189 FPNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
           +P +PG K  +  PG LG    K  +G +     +  +G PG+ GE   P
Sbjct: 795 YPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERGQP 844


>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
          Length = 1712

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 193 PGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAG 233
           PG   L   PG +G    K   G S TI T+  +G PG  G
Sbjct: 526 PGFPGLKGVPGNIGAPGPKGAKGDSRTITTKGERGQPGVPG 566


>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
          Length = 1073

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 190 PNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
           P  PG   L   PG LG Q    P G+      + + G PG AG   AP
Sbjct: 358 PGLPGEPGLQGRPGELGPQGPTGPPGAK---GQEGAHGAPGAAGNPGAP 403


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 190 PNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
           P  PG   L   PG LG Q    P G+      + + G PG AG   AP
Sbjct: 876 PGLPGEPGLQGRPGELGPQGPTGPPGAK---GQEGAHGAPGAAGNPGAP 921


>gi|223717985 corticotropin releasing hormone receptor 1 isoform 4
           [Homo sapiens]
          Length = 401

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 59  TNFLFFGPLGFSFFFNMLFVFRYCRMLE---EGSFRGRTADFVFMFLFGGVLMTLLGLLG 115
           T++++ GP+      N +F+F   R+L      S    T  +        VL+ LLG+  
Sbjct: 268 TDYIYQGPMILVLLINFIFLFNIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITY 327

Query: 116 SLFFL--GQALMAMLVYVW 132
            LFF+  G+  ++ +V+++
Sbjct: 328 MLFFVNPGEDEVSRVVFIY 346


>gi|223717978 corticotropin releasing hormone receptor 1 isoform 3
           [Homo sapiens]
          Length = 375

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 59  TNFLFFGPLGFSFFFNMLFVFRYCRMLE---EGSFRGRTADFVFMFLFGGVLMTLLGLLG 115
           T++++ GP+      N +F+F   R+L      S    T  +        VL+ LLG+  
Sbjct: 228 TDYIYQGPMILVLLINFIFLFNIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITY 287

Query: 116 SLFFL--GQALMAMLVYVW 132
            LFF+  G+  ++ +V+++
Sbjct: 288 MLFFVNPGEDEVSRVVFIY 306


>gi|223717971 corticotropin releasing hormone receptor 1 isoform 1
           [Homo sapiens]
          Length = 444

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 59  TNFLFFGPLGFSFFFNMLFVFRYCRMLE---EGSFRGRTADFVFMFLFGGVLMTLLGLLG 115
           T++++ GP+      N +F+F   R+L      S    T  +        VL+ LLG+  
Sbjct: 297 TDYIYQGPMILVLLINFIFLFNIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITY 356

Query: 116 SLFFL--GQALMAMLVYVW 132
            LFF+  G+  ++ +V+++
Sbjct: 357 MLFFVNPGEDEVSRVVFIY 375


>gi|19923245 corticotropin releasing hormone receptor 1 isoform 2
           [Homo sapiens]
          Length = 415

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 59  TNFLFFGPLGFSFFFNMLFVFRYCRMLE---EGSFRGRTADFVFMFLFGGVLMTLLGLLG 115
           T++++ GP+      N +F+F   R+L      S    T  +        VL+ LLG+  
Sbjct: 268 TDYIYQGPMILVLLINFIFLFNIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITY 327

Query: 116 SLFFL--GQALMAMLVYVW 132
            LFF+  G+  ++ +V+++
Sbjct: 328 MLFFVNPGEDEVSRVVFIY 346


>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
          Length = 1604

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 17/49 (34%), Positives = 21/49 (42%)

Query: 190  PNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
            P  PG + L   PG  G +  + P G+S     Q  QG PG  G    P
Sbjct: 1119 PGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPP 1167



 Score = 28.5 bits (62), Expect = 5.4
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 190 PNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAG 233
           P QPG   +   PG  G+Q    P G  +    Q  QG PG  G
Sbjct: 761 PGQPGLPGVQGPPGLKGVQGEPGPPGRGV----QGPQGEPGAPG 800


>gi|65301139 ATPase, class II, type 9A [Homo sapiens]
          Length = 1047

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 13/140 (9%)

Query: 102 LFGGVLMTLLGLLGSLFFLGQALMAMLVYV--WSRRSP-RVRVNF-FGLLTFQAPFLPWA 157
           LFG +++  L ++    F G+  + ++ ++  +S   P  +RVN   G + +      W 
Sbjct: 307 LFGALVVVSLVMVALQHFAGRWYLQIIRFLLLFSNIIPISLRVNLDMGKIVYS-----WV 361

Query: 158 LMGFSLLLGNSILVDLLGIAVGHIYYFLED----VFPNQPGGKRLLQTPGFLGLQSSKAP 213
           +   S + G  +    +   +G I Y L D    +  N+   KRL       GL S    
Sbjct: 362 IRRDSKIPGTVVRSSTIPEQLGRISYLLTDKTGTLTQNEMIFKRLHLGTVAYGLDSMDEV 421

Query: 214 AGSSLTIWTQQSQGGPGTAG 233
                +I+TQQSQ  P   G
Sbjct: 422 QSHIFSIYTQQSQDPPAQKG 441


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 12/49 (24%)

Query: 190 PNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
           P  PG + LL  PG LGL  S+              +G PG AG +  P
Sbjct: 858 PGTPGPQGLLGAPGILGLPGSRG------------ERGLPGVAGAVGEP 894


>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
            sapiens]
          Length = 5537

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 192  QPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAPS 239
            Q GG RL  TPG + L         +  +  QQ Q   G AG LA PS
Sbjct: 3651 QAGGLRL--TPGGMALPGQPGGPFLNTALAQQQQQQHSGGAGSLAGPS 3696


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
            sapiens]
          Length = 1650

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 18/53 (33%), Positives = 22/53 (41%)

Query: 186  EDVFPNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
            ED  P QPG        G  G    + PAGS  +   Q  +G  G  G + AP
Sbjct: 1209 EDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAP 1261


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
            sapiens]
          Length = 1629

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 18/53 (33%), Positives = 22/53 (41%)

Query: 186  EDVFPNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
            ED  P QPG        G  G    + PAGS  +   Q  +G  G  G + AP
Sbjct: 1188 EDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAP 1240


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 18/53 (33%), Positives = 22/53 (41%)

Query: 186  EDVFPNQPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
            ED  P QPG        G  G    + PAGS  +   Q  +G  G  G + AP
Sbjct: 1295 EDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAP 1347


>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
           sapiens]
          Length = 1424

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 16/47 (34%), Positives = 20/47 (42%)

Query: 192 QPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
           QPG K L   PG  G++    P G       +  QG PG  G   +P
Sbjct: 561 QPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSP 607


>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
           sapiens]
          Length = 1494

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 16/47 (34%), Positives = 20/47 (42%)

Query: 192 QPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
           QPG K L   PG  G++    P G       +  QG PG  G   +P
Sbjct: 561 QPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSP 607


>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1637

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 16/47 (34%), Positives = 20/47 (42%)

Query: 192 QPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
           QPG K L   PG  G++    P G       +  QG PG  G   +P
Sbjct: 561 QPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSP 607


>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1670

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 16/47 (34%), Positives = 20/47 (42%)

Query: 192 QPGGKRLLQTPGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAGELAAP 238
           QPG K L   PG  G++    P G       +  QG PG  G   +P
Sbjct: 561 QPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSP 607


>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
          Length = 1497

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 202  PGFLGLQSSKAPAGSSLTIWTQQSQGGPGTAG 233
            PG LG+ S  +  GSS T++     G PG  G
Sbjct: 971  PGALGIPSGPSEGGSSSTMYVSGPPGPPGPPG 1002


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.331    0.145    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,963,461
Number of Sequences: 37866
Number of extensions: 394761
Number of successful extensions: 1871
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1511
Number of HSP's gapped (non-prelim): 379
length of query: 239
length of database: 18,247,518
effective HSP length: 99
effective length of query: 140
effective length of database: 14,498,784
effective search space: 2029829760
effective search space used: 2029829760
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.