Guide to the Human Genome
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Name: DERL3 Sequence: fasta or formatted (235aa) NCBI GI: 50845411
Description:

derlin 3 isoform 2

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [239aa] derlin 3 isoform 1
alt prot [205aa] derlin 3 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         17           2
 C cysteine            0.9          2           1
 D aspartate           2.1          5           1
 E glutamate           3.4          8           2
 F phenylalanine      12.3         29           3
 G glycine             8.1         19           2
 H histidine           1.3          3           1
 I isoleucine          1.3          3           1
 K lysine              1.3          3           1
 L leucine            18.3         43           3
 M methionine          3.4          8           1
 N asparagine          3.0          7           1
 P proline             8.1         19           3
 Q glutamine           5.1         12           2
 R arginine            5.1         12           2
 S serine              3.4          8           1
 T threonine           3.8          9           2
 V valine              7.2         17           1
 W tryptophan          1.7          4           1
 Y tyrosine            3.0          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   derlin 3 isoform 2 
DERL3                 0.862   derlin 3 isoform 1 
DERL3                 0.858   derlin 3 isoform 3 
DERL2                 0.775   Der1-like domain family, member 2 
DERL1                 0.260   Der1-like domain family, member 1 isoform a 
DERL1                 0.199   Der1-like domain family, member 1 isoform b 
PCLO                  0.018   piccolo isoform 2 
PCLO                  0.018   piccolo isoform 1 
CNR2                  0.018   cannabinoid receptor 2 (macrophage) 
GGN                   0.011   gametogenetin 
CRHR1                 0.009   corticotropin releasing hormone receptor 1 isoform ...
CRHR1                 0.009   corticotropin releasing hormone receptor 1 isoform ...
CRHR1                 0.009   corticotropin releasing hormone receptor 1 isoform ...
CRHR1                 0.009   corticotropin releasing hormone receptor 1 isoform 2...
SPEN                  0.009   spen homolog, transcriptional regulator 
HOXB2                 0.009   homeobox B2 
PRR12                 0.009   proline rich 12 
S1PR4                 0.007   sphingosine-1-phosphate receptor 4 precursor 
BRD4                  0.007   bromodomain-containing protein 4 isoform long 
ZFHX4                 0.007   zinc finger homeodomain 4 
GRINA                 0.007   glutamate receptor, ionotropic, N-methyl D-aspartate...
GRINA                 0.007   glutamate receptor, ionotropic, N-methyl D-aspartate...
ZNF652                0.007   zinc finger protein 652 
ZNF652                0.007   zinc finger protein 652 
KCNA5                 0.007   potassium voltage-gated channel, shaker-related subf...
MICAL1                0.007   microtubule associated monoxygenase, calponin and L...
MICAL1                0.007   microtubule associated monoxygenase, calponin and L...
MYST3                 0.007   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.007   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.007   MYST histone acetyltransferase (monocytic leukemia)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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