Guide to the Human Genome
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Name: DERL3 Sequence: fasta or formatted (239aa) NCBI GI: 209364542
Description:

derlin 3 isoform 1

Referenced in:

Protein Composition and Structure

Other entries for this name:
alt prot [205aa] derlin 3 isoform 3
alt prot [235aa] derlin 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         20           2
 C cysteine            0.8          2           1
 D aspartate           1.3          3           1
 E glutamate           2.5          6           2
 F phenylalanine      12.1         29           3
 G glycine            10.0         24           2
 H histidine           0.8          2           1
 I isoleucine          1.7          4           1
 K lysine              1.3          3           1
 L leucine            16.7         40           3
 M methionine          3.3          8           1
 N asparagine          2.5          6           1
 P proline             5.4         13           1
 Q glutamine           5.4         13           2
 R arginine            5.0         12           2
 S serine              5.9         14           2
 T threonine           5.0         12           2
 V valine              7.1         17           1
 W tryptophan          2.1          5           1
 Y tyrosine            2.5          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   derlin 3 isoform 1 
DERL3                 0.860   derlin 3 isoform 2 
DERL3                 0.856   derlin 3 isoform 3 
DERL2                 0.699   Der1-like domain family, member 2 
DERL1                 0.260   Der1-like domain family, member 1 isoform a 
DERL1                 0.199   Der1-like domain family, member 1 isoform b 
CNR2                  0.017   cannabinoid receptor 2 (macrophage) 
COL4A6                0.015   type IV alpha 6 collagen isoform A precursor 
COL4A6                0.015   type IV alpha 6 collagen isoform B precursor 
COL6A1                0.013   collagen, type VI, alpha 1 precursor 
COL5A3                0.013   collagen, type V, alpha 3 preproprotein 
COL4A2                0.011   alpha 2 type IV collagen preproprotein 
LOC100293055          0.011   PREDICTED: similar to COL22A1 protein 
COL22A1               0.011   collagen, type XXII, alpha 1 
CRHR1                 0.009   corticotropin releasing hormone receptor 1 isoform ...
CRHR1                 0.009   corticotropin releasing hormone receptor 1 isoform ...
CRHR1                 0.009   corticotropin releasing hormone receptor 1 isoform ...
CRHR1                 0.009   corticotropin releasing hormone receptor 1 isoform 2...
COL16A1               0.009   alpha 1 type XVI collagen precursor 
ATP9A                 0.009   ATPase, class II, type 9A 
COL1A2                0.009   alpha 2 type I collagen 
MLL2                  0.007   myeloid/lymphoid or mixed-lineage leukemia 2 
COL11A2               0.007   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.007   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.007   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL4A3                0.007   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.007   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.007   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.007   alpha 3 type IV collagen isoform 1 precursor 
COL17A1               0.007   alpha 1 type XVII collagen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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