Guide to the Human Genome
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Name: RAD54L2 Sequence: fasta or formatted (1467aa) NCBI GI: 168823443
Description:

RAD54-like 2

Referenced in:

DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         92           3
 C cysteine            1.6         24           2
 D aspartate           5.5         81           3
 E glutamate           7.8        114           8
 F phenylalanine       3.3         48           2
 G glycine             6.3         92           2
 H histidine           2.4         35           1
 I isoleucine          3.6         53           2
 K lysine              5.0         74           3
 L leucine             9.7        143           3
 M methionine          1.9         28           2
 N asparagine          4.0         58           2
 P proline             7.9        116           3
 Q glutamine           4.6         67           2
 R arginine            6.3         92           3
 S serine              9.2        135           4
 T threonine           4.8         70           3
 V valine              6.7         99           3
 W tryptophan          0.7         11           1
 Y tyrosine            2.4         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD54-like 2 
ATRX                  0.163   transcriptional regulator ATRX isoform 2 
ATRX                  0.163   transcriptional regulator ATRX isoform 1 
RAD54L                0.075   RAD54-like protein 
RAD54L                0.075   RAD54-like protein 
RAD54B                0.071   RAD54 homolog B 
ERCC6                 0.063   excision repair cross-complementing rodent repair def...
HELLS                 0.059   helicase, lymphoid-specific 
ERCC6L                0.053   excision repair protein ERCC6-like 
C9orf102              0.053   RAD26L hypothetical protein 
SMARCAD1              0.045   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.044   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.044   SWI/SNF-related, matrix-associated actin-dependent ...
BTAF1                 0.043   BTAF1 RNA polymerase II, B-TFIID transcription facto...
SMARCA2               0.039   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.039   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.033   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.033   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.033   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.033   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.033   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.033   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.033   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA1               0.032   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA5               0.030   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA1               0.029   SWI/SNF-related matrix-associated actin-dependent re...
SRCAP                 0.028   Snf2-related CBP activator protein 
CHD7                  0.027   chromodomain helicase DNA binding protein 7 
CHD6                  0.027   chromodomain helicase DNA binding protein 6 
CHD2                  0.027   chromodomain helicase DNA binding protein 2 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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