Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RAD54L Sequence: fasta or formatted (747aa) NCBI GI: 216548186
Description:

RAD54-like protein

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt mRNA [747aa] RAD54-like protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         40           3
 C cysteine            2.8         21           2
 D aspartate           5.8         43           2
 E glutamate           6.6         49           3
 F phenylalanine       3.2         24           1
 G glycine             5.9         44           2
 H histidine           2.5         19           1
 I isoleucine          4.7         35           2
 K lysine              6.6         49           2
 L leucine            12.2         91           2
 M methionine          1.5         11           1
 N asparagine          2.7         20           1
 P proline             5.5         41           3
 Q glutamine           4.6         34           1
 R arginine            7.6         57           2
 S serine              9.0         67           3
 T threonine           3.7         28           1
 V valine              6.4         48           3
 W tryptophan          1.3         10           1
 Y tyrosine            2.1         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD54-like protein 
RAD54L                1.000   RAD54-like protein 
RAD54B                0.309   RAD54 homolog B 
ERCC6                 0.169   excision repair cross-complementing rodent repair def...
ERCC6L                0.153   excision repair protein ERCC6-like 
RAD54L2               0.149   RAD54-like 2 
C9orf102              0.142   RAD26L hypothetical protein 
BTAF1                 0.141   BTAF1 RNA polymerase II, B-TFIID transcription facto...
CHD2                  0.137   chromodomain helicase DNA binding protein 2 isoform...
SMARCA1               0.136   SWI/SNF-related matrix-associated actin-dependent r...
CHD9                  0.134   chromodomain helicase DNA binding protein 9 
CHD4                  0.132   chromodomain helicase DNA binding protein 4 
SMARCA5               0.132   SWI/SNF-related matrix-associated actin-dependent re...
CHD1                  0.132   chromodomain helicase DNA binding protein 1 
CHD5                  0.132   chromodomain helicase DNA binding protein 5 
CHD3                  0.130   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.130   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.130   chromodomain helicase DNA binding protein 3 isoform...
CHD8                  0.130   chromodomain helicase DNA binding protein 8 
SMARCA1               0.130   SWI/SNF-related matrix-associated actin-dependent re...
CHD7                  0.128   chromodomain helicase DNA binding protein 7 
CHD6                  0.126   chromodomain helicase DNA binding protein 6 
SMARCA4               0.126   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.126   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.126   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.126   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.126   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.124   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.124   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.124   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press