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Search of human proteins with 113426298
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113426298 PREDICTED: hypothetical protein FLJ39639 [Homo
sapiens]
(284 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169209664 PREDICTED: hypothetical protein FLJ39639 [Homo sapi... 601 e-172
gi|113426298 PREDICTED: hypothetical protein FLJ39639 [Homo sapi... 601 e-172
gi|113425870 PREDICTED: hypothetical protein LOC283876 [Homo sap... 601 e-172
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 51 1e-06
gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isof... 46 3e-05
gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isofo... 46 3e-05
gi|22027541 programmed cell death 7 [Homo sapiens] 45 6e-05
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap... 45 9e-05
gi|19924099 synapsin I isoform Ia [Homo sapiens] 44 2e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 44 2e-04
gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo ... 44 2e-04
gi|50345997 E1A binding protein p300 [Homo sapiens] 43 3e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 43 4e-04
gi|42733592 hypothetical protein LOC399693 [Homo sapiens] 43 4e-04
gi|145309324 FH2 domain containing 1 [Homo sapiens] 42 5e-04
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 42 8e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 42 8e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 42 8e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 42 8e-04
gi|50428940 mediator complex subunit 25 [Homo sapiens] 42 8e-04
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 41 0.001
gi|13699803 WAS protein family, member 3 [Homo sapiens] 41 0.001
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 40 0.002
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 40 0.002
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 40 0.002
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 40 0.002
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 40 0.002
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 40 0.002
>gi|169209664 PREDICTED: hypothetical protein FLJ39639 [Homo
sapiens]
Length = 284
Score = 601 bits (1549), Expect = e-172
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 1 MSFIWKAVLRPSTPRPVLLSFPRLTLFCNFLFMSLEATKWWEIRDSNIWWPCDVSKLLDF 60
MSFIWKAVLRPSTPRPVLLSFPRLTLFCNFLFMSLEATKWWEIRDSNIWWPCDVSKLLDF
Sbjct: 1 MSFIWKAVLRPSTPRPVLLSFPRLTLFCNFLFMSLEATKWWEIRDSNIWWPCDVSKLLDF 60
Query: 61 SQFPFPIKWVVLGIRGSNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQ 120
SQFPFPIKWVVLGIRGSNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQ
Sbjct: 61 SQFPFPIKWVVLGIRGSNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQ 120
Query: 121 PSPPGPLPPTPHGPHARAETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAV 180
PSPPGPLPPTPHGPHARAETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAV
Sbjct: 121 PSPPGPLPPTPHGPHARAETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAV 180
Query: 181 ENKKELSAVCPDAGRRWGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRG 240
ENKKELSAVCPDAGRRWGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRG
Sbjct: 181 ENKKELSAVCPDAGRRWGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRG 240
Query: 241 PHKARQTLQPDPDAPPSRMHMRGTLPETHLPERPGSTRANWRAD 284
PHKARQTLQPDPDAPPSRMHMRGTLPETHLPERPGSTRANWRAD
Sbjct: 241 PHKARQTLQPDPDAPPSRMHMRGTLPETHLPERPGSTRANWRAD 284
>gi|113426298 PREDICTED: hypothetical protein FLJ39639 [Homo
sapiens]
Length = 284
Score = 601 bits (1549), Expect = e-172
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 1 MSFIWKAVLRPSTPRPVLLSFPRLTLFCNFLFMSLEATKWWEIRDSNIWWPCDVSKLLDF 60
MSFIWKAVLRPSTPRPVLLSFPRLTLFCNFLFMSLEATKWWEIRDSNIWWPCDVSKLLDF
Sbjct: 1 MSFIWKAVLRPSTPRPVLLSFPRLTLFCNFLFMSLEATKWWEIRDSNIWWPCDVSKLLDF 60
Query: 61 SQFPFPIKWVVLGIRGSNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQ 120
SQFPFPIKWVVLGIRGSNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQ
Sbjct: 61 SQFPFPIKWVVLGIRGSNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQ 120
Query: 121 PSPPGPLPPTPHGPHARAETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAV 180
PSPPGPLPPTPHGPHARAETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAV
Sbjct: 121 PSPPGPLPPTPHGPHARAETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAV 180
Query: 181 ENKKELSAVCPDAGRRWGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRG 240
ENKKELSAVCPDAGRRWGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRG
Sbjct: 181 ENKKELSAVCPDAGRRWGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRG 240
Query: 241 PHKARQTLQPDPDAPPSRMHMRGTLPETHLPERPGSTRANWRAD 284
PHKARQTLQPDPDAPPSRMHMRGTLPETHLPERPGSTRANWRAD
Sbjct: 241 PHKARQTLQPDPDAPPSRMHMRGTLPETHLPERPGSTRANWRAD 284
>gi|113425870 PREDICTED: hypothetical protein LOC283876 [Homo
sapiens]
Length = 284
Score = 601 bits (1549), Expect = e-172
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 1 MSFIWKAVLRPSTPRPVLLSFPRLTLFCNFLFMSLEATKWWEIRDSNIWWPCDVSKLLDF 60
MSFIWKAVLRPSTPRPVLLSFPRLTLFCNFLFMSLEATKWWEIRDSNIWWPCDVSKLLDF
Sbjct: 1 MSFIWKAVLRPSTPRPVLLSFPRLTLFCNFLFMSLEATKWWEIRDSNIWWPCDVSKLLDF 60
Query: 61 SQFPFPIKWVVLGIRGSNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQ 120
SQFPFPIKWVVLGIRGSNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQ
Sbjct: 61 SQFPFPIKWVVLGIRGSNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQ 120
Query: 121 PSPPGPLPPTPHGPHARAETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAV 180
PSPPGPLPPTPHGPHARAETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAV
Sbjct: 121 PSPPGPLPPTPHGPHARAETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAV 180
Query: 181 ENKKELSAVCPDAGRRWGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRG 240
ENKKELSAVCPDAGRRWGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRG
Sbjct: 181 ENKKELSAVCPDAGRRWGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRG 240
Query: 241 PHKARQTLQPDPDAPPSRMHMRGTLPETHLPERPGSTRANWRAD 284
PHKARQTLQPDPDAPPSRMHMRGTLPETHLPERPGSTRANWRAD
Sbjct: 241 PHKARQTLQPDPDAPPSRMHMRGTLPETHLPERPGSTRANWRAD 284
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 51.2 bits (121), Expect = 1e-06
Identities = 55/199 (27%), Positives = 75/199 (37%), Gaps = 36/199 (18%)
Query: 75 RGSNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGP 134
R + G +G + P P P+ A T R P +P PP P PP P
Sbjct: 369 RPPEADGKKGNSPNSEP---PTPKTAWAETSR---------PPETEPGPPAPKPPLPPPH 416
Query: 135 HARAETGASPGS-PVR--QPLPGPAPQRE-AAWGRRR----------VERAAEDKEEVAV 180
A PG P R P PAP+ E AW +RR VERA +EE
Sbjct: 417 RGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEER 476
Query: 181 ENKKELSAVCPDAGRR----WGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRL 236
++E A C + +R +G L A PA PA P P + ++
Sbjct: 477 RMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAA------PSTPAPPPAVPKELPA 530
Query: 237 LPRGPHKARQTLQPDPDAP 255
P P + T + +P+ P
Sbjct: 531 PPAPPPASAPTPETEPEEP 549
Score = 33.5 bits (75), Expect = 0.22
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 114 GGPAPAQPSPPGPLPPTPHGPHARAETGA--SPGSPVRQPLPGPAPQREAAWGRRRVE-- 169
G PA P P PL P GP + + A P +P + LP PA A+ GR +
Sbjct: 1994 GSLPPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLPSPARPFPASLGRAELHPV 2053
Query: 170 --RAAEDKEEVAVENKKELSAVCPDAGRRWGQARPDLHAIPA 209
+ +D ++++ S+ P GR + L A P+
Sbjct: 2054 ELKPFQDYQKLSSNLGGPGSSRTPPTGRSFSGLNSRLKATPS 2095
Score = 32.7 bits (73), Expect = 0.37
Identities = 49/187 (26%), Positives = 71/187 (37%), Gaps = 27/187 (14%)
Query: 90 RPRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGSPVR 149
RP TSP +AA K P P PP L P P A P+
Sbjct: 804 RPLTSPLRQAADEDD------KGMRSETPPVPPPPPYLASYPGFPENGAPGPPISRFPLE 857
Query: 150 QPLPGPAPQREAAWGRRRVERAAEDKEEVAVENKKELSAVCPDAGRRWGQARPDLHAIPA 209
+P P P P + +++ K+E E +L+ P+AGR+ PA
Sbjct: 858 EPGPRPLPWPPGSDEVAKIQ-TPPPKKEPPKEETAQLTG--PEAGRK-----------PA 903
Query: 210 GVPACLREGKDPGRLLPKVRLLPKVRLLPRGPHKARQTLQP-DPDAPPSRM-HMRGTLPE 267
+G P P+ + R PR P +R+ + P +P APP R ++ P
Sbjct: 904 RGVGSGGQGPPP----PRRESRTETRWGPR-PGSSRRGIPPEEPGAPPRRAGPIKKPPPP 958
Query: 268 THLPERP 274
T + E P
Sbjct: 959 TKVEELP 965
Score = 31.2 bits (69), Expect = 1.1
Identities = 43/173 (24%), Positives = 56/173 (32%), Gaps = 19/173 (10%)
Query: 113 TGGPAPAQP----SPPGPLPPTPHGPHARAETGASPGSPVRQPLPGPAPQREAAWGRRRV 168
T P PA P +PP P P + P E A P PG A G
Sbjct: 517 TPAPPPAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQSTPTPGVAAAPTLVSGGGST 576
Query: 169 ERAAEDKEEVAVENKKELSAVCPDAGRRWGQARPDLHAIPAGVPACLRE----GKDPGRL 224
+ E S V P + G P+ P P E G P R
Sbjct: 577 SSTS--------SGSFEASPVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQ 628
Query: 225 LPKVRL-LPKVR--LLPRGPHKARQTLQPDPDAPPSRMHMRGTLPETHLPERP 274
P L PK + L PR + ++ L + H +G+ P T +P P
Sbjct: 629 PPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQHQWQQHQQGSAPPTPVPPSP 681
>gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isoform 2
[Homo sapiens]
Length = 1562
Score = 46.2 bits (108), Expect = 3e-05
Identities = 51/183 (27%), Positives = 72/183 (39%), Gaps = 19/183 (10%)
Query: 105 VRGASVKRTGGPAPAQPSPPGPLPPTPHGP-HARAETGASP---GSPVRQPLPGPAPQRE 160
VR A+ P P P PPGP P GP +R E S G P + LPG ++
Sbjct: 1118 VRNATRHPGAAPMPVHPPPPGPREPAQQGPTPSRVELDDSDVFHGEPEPEELPGGTGSQQ 1177
Query: 161 AAWGRRRVERAAEDKEEVAVENKKELSAV-CP----DAGRRWGQARPDLHAIPAGVPACL 215
G+ +V ED E+ ++EL + CP D R + R +H G
Sbjct: 1178 RVQGKHQV--LLEDPEQEGSAEEEELGVLPCPSTSLDGENRGIRTRNPIHLAFPG--PLF 1233
Query: 216 REGKDPGRL--LPKVRLLPKVRLLPRGPHKARQTLQPDPDAPPSRMHMRGTLPETHLPER 273
EG L + +R L LLP + + +P+ D P+ + T P
Sbjct: 1234 MEGLADSALEDVENLRHLILWSLLPGHTMETQAAQEPEDDLTPT----PSVISVTSHPWD 1289
Query: 274 PGS 276
PGS
Sbjct: 1290 PGS 1292
>gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isoform 1
[Homo sapiens]
Length = 1522
Score = 46.2 bits (108), Expect = 3e-05
Identities = 51/183 (27%), Positives = 72/183 (39%), Gaps = 19/183 (10%)
Query: 105 VRGASVKRTGGPAPAQPSPPGPLPPTPHGP-HARAETGASP---GSPVRQPLPGPAPQRE 160
VR A+ P P P PPGP P GP +R E S G P + LPG ++
Sbjct: 1078 VRNATRHPGAAPMPVHPPPPGPREPAQQGPTPSRVELDDSDVFHGEPEPEELPGGTGSQQ 1137
Query: 161 AAWGRRRVERAAEDKEEVAVENKKELSAV-CP----DAGRRWGQARPDLHAIPAGVPACL 215
G+ +V ED E+ ++EL + CP D R + R +H G
Sbjct: 1138 RVQGKHQV--LLEDPEQEGSAEEEELGVLPCPSTSLDGENRGIRTRNPIHLAFPG--PLF 1193
Query: 216 REGKDPGRL--LPKVRLLPKVRLLPRGPHKARQTLQPDPDAPPSRMHMRGTLPETHLPER 273
EG L + +R L LLP + + +P+ D P+ + T P
Sbjct: 1194 MEGLADSALEDVENLRHLILWSLLPGHTMETQAAQEPEDDLTPT----PSVISVTSHPWD 1249
Query: 274 PGS 276
PGS
Sbjct: 1250 PGS 1252
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 45.4 bits (106), Expect = 6e-05
Identities = 30/76 (39%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 89 LRPRTSPKPRAATGTTVRGASVKRTGGPAPA-QPSPPGPLPPTPHGPHARAETGASPGSP 147
L+P + +PRA+ A R GG A A P PP PLPP P P R G G
Sbjct: 56 LQPPLALQPRAS-------AEASRGGGGAGAFYPVPPPPLPPPP--PQCRPFPGTDAGER 106
Query: 148 VRQPLPGPAPQREAAW 163
R P PGP P W
Sbjct: 107 PRPPPPGPGPPWSPRW 122
Score = 28.5 bits (62), Expect = 7.0
Identities = 20/50 (40%), Positives = 20/50 (40%), Gaps = 12/50 (24%)
Query: 115 GPAPAQPSPPGPL--PPTPHGPHARAETGASPGSPVRQP-LPGPAPQREA 161
GP P QP PP P PP P SP P P PGP P A
Sbjct: 13 GPPPPQPPPPAPFGCPPPPL---------PSPAFPPPLPQRPGPFPGASA 53
Score = 28.1 bits (61), Expect = 9.1
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 13/47 (27%)
Query: 114 GGPAPAQPSPPGPLPPTPHGPHARAETGASPGSPVRQP-LPGPAPQR 159
G P P P PP PP P G P P+ P P P PQR
Sbjct: 10 GRPGPPPPQPP---PPAPFG---------CPPPPLPSPAFPPPLPQR 44
>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
sapiens]
Length = 735
Score = 44.7 bits (104), Expect = 9e-05
Identities = 56/202 (27%), Positives = 77/202 (38%), Gaps = 31/202 (15%)
Query: 108 ASVKRTGGPAPA-QPSPPGPLPPTPHGPHARAETGASPGSPVRQPLPGPAPQREAAWGRR 166
+ K G PA +PSPP P P P G A AE +SP + R P G Q RR
Sbjct: 24 SDAKERGHPAQRPEPSPPEPEPQAPEGSQAGAEGPSSPEAS-RSPARGAYLQSLEPSSRR 82
Query: 167 RVERAAEDKEEVAV--------ENKKEL---------------SAVCPDAGRRWGQARPD 203
V A+ E+ ++ E E+ P G +
Sbjct: 83 WVLGGAKPAEDTSLGPGVPGTGEPAGEIWYNPIPEEDPRPPAPEPPGPQPGSAESEGLAP 142
Query: 204 LHAIPAGVPACLREGKDPG---RLLPKVRLLPKV--RLLPRGPHKARQTLQPDP-DAPPS 257
A PA P K PG RL K++ LP++ RL RGP R+ + P + S
Sbjct: 143 QGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRLSLRGPRAGRERERAAPAGSVIS 202
Query: 258 RMHMRGTLPETHLPERPGSTRA 279
R H+ ++ PG TR+
Sbjct: 203 RYHLDSSVGGPGPAAGPGGTRS 224
Score = 30.4 bits (67), Expect = 1.8
Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 4/103 (3%)
Query: 104 TVRGASVKRTGGPAPA---QPSPP-GPLPPTPHGPHARAETGASPGSPVRQPLPGPAPQR 159
T G V TG PA P P P PP P P + + S G + P P +
Sbjct: 94 TSLGPGVPGTGEPAGEIWYNPIPEEDPRPPAPEPPGPQPGSAESEGLAPQGAAPASPPTK 153
Query: 160 EAAWGRRRVERAAEDKEEVAVENKKELSAVCPDAGRRWGQARP 202
+ R K + E ++ LS P AGR +A P
Sbjct: 154 ASRTKSPGPARRLSIKMKKLPELRRRLSLRGPRAGRERERAAP 196
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 43.9 bits (102), Expect = 2e-04
Identities = 43/159 (27%), Positives = 54/159 (33%), Gaps = 15/159 (9%)
Query: 115 GPAPAQPSPPGPLPPTPHGPHARAETGASPGSPVRQPLPGP--APQREAAWGRRRVERAA 172
GP P + PP P P G + G GSP+ Q LP P APQ+ A+ +
Sbjct: 471 GPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQG 530
Query: 173 EDKEEVAVENKKELSAVCPDAGRRWGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLP 232
VA P A R P AG P R+ G PK P
Sbjct: 531 RQSRPVAG------GPGAPPAARPPASPSPQRQ---AGPPQATRQTSVSGPAPPKASGAP 581
Query: 233 KVRLLPRGPHKARQTLQPDPDAPPSRMHMRGTLPETHLP 271
+GP + P P P + G +P T P
Sbjct: 582 PGGQQRQGPPQK----PPGPAGPTRQASQAGPVPRTGPP 616
Score = 39.7 bits (91), Expect = 0.003
Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 20/96 (20%)
Query: 84 GRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLP---PTPH-------- 132
G+ RQ P+ P P T + V RTG P QP P GP P P P
Sbjct: 584 GQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQD 643
Query: 133 -GPHARAETGASPGSPVRQP--------LPGPAPQR 159
P A A G P + + LP PAP R
Sbjct: 644 VPPPATAAAGGPPHPQLNKSQSLTNAFNLPEPAPPR 679
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 43.9 bits (102), Expect = 2e-04
Identities = 43/159 (27%), Positives = 54/159 (33%), Gaps = 15/159 (9%)
Query: 115 GPAPAQPSPPGPLPPTPHGPHARAETGASPGSPVRQPLPGP--APQREAAWGRRRVERAA 172
GP P + PP P P G + G GSP+ Q LP P APQ+ A+ +
Sbjct: 471 GPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQG 530
Query: 173 EDKEEVAVENKKELSAVCPDAGRRWGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLP 232
VA P A R P AG P R+ G PK P
Sbjct: 531 RQSRPVAG------GPGAPPAARPPASPSPQRQ---AGPPQATRQTSVSGPAPPKASGAP 581
Query: 233 KVRLLPRGPHKARQTLQPDPDAPPSRMHMRGTLPETHLP 271
+GP + P P P + G +P T P
Sbjct: 582 PGGQQRQGPPQK----PPGPAGPTRQASQAGPVPRTGPP 616
Score = 38.5 bits (88), Expect = 0.007
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 84 GRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGAS 143
G+ RQ P+ P P T + V RTG P QP P GP P P +
Sbjct: 584 GQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQD 643
Query: 144 PGSPVRQPLPGPA-PQREAA 162
P GP PQ +A+
Sbjct: 644 VPPPATAAAGGPPHPQLKAS 663
>gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo
sapiens]
Length = 1386
Score = 43.5 bits (101), Expect = 2e-04
Identities = 47/159 (29%), Positives = 62/159 (38%), Gaps = 12/159 (7%)
Query: 64 PFPIKWVVLGIRGSNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQPSP 123
P + +LGIR + AG G P SP P +T ++ G + + G P P
Sbjct: 1187 PLSVSQPMLGIREARPAG-LGAGPAASPHLSPSPAPSTASSAPGRTWQGNGEMTPPLQGP 1245
Query: 124 PGPLPPTPHGPHARAETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAVENK 183
P R E SPG P P P P+ EA+W RAA + E
Sbjct: 1246 RARFRKKPKALPYRREN--SPGD--LPPPPLPPPEEEASWALEL--RAAGSMSSLERERS 1299
Query: 184 KELSAV--CPDAGRRWGQARPDLHA-IPAGVPACLREGK 219
E AV P A +R PD A +P P+ L G+
Sbjct: 1300 GERKAVQAVPLAAQR--VLHPDEEAWLPYSRPSFLSRGQ 1336
Score = 30.4 bits (67), Expect = 1.8
Identities = 40/170 (23%), Positives = 50/170 (29%), Gaps = 38/170 (22%)
Query: 92 RTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGSP--VR 149
R +P P + G + T P+ P PP P PH P SP V
Sbjct: 1139 RETPSPTPSYGQ-------QSTATLTPSPPDPPQPPTDMPHLHQMPRRVPLGPSSPLSVS 1191
Query: 150 QPLPGPAPQREAAWGRRRVERAAEDKEEVAVENKKELSAVCPDAGRRW---GQARPDLHA 206
QP+ G R A G A + S GR W G+ P L
Sbjct: 1192 QPMLGIREARPAGLG-------AGPAASPHLSPSPAPSTASSAPGRTWQGNGEMTPPLQG 1244
Query: 207 IPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRGPHKARQTLQPDPDAPP 256
P+ R K + LP + L P P PP
Sbjct: 1245 -------------------PRARFRKKPKALPYRRENSPGDLPPPPLPPP 1275
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 43.1 bits (100), Expect = 3e-04
Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 95 PKPRAATGTTVRGASVKRTGGPAPA---QPSPPGPLPP----------TPHGPHARAETG 141
P P AT TT G P P QP+PP +PP G A T
Sbjct: 1848 PSPTPATPTTPTGQQPTTPQTPQPTSQPQPTPPNSMPPYLPRTQAAGPVSQGKAAGQVTP 1907
Query: 142 ASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVA 179
+P + PLPGP P A +++RAAE + ++A
Sbjct: 1908 PTPPQTAQPPLPGPPPA--AVEMAMQIQRAAETQRQMA 1943
Score = 31.6 bits (70), Expect = 0.83
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 106 RGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGSPVRQPLPGP 155
R AS++RTG Q P P P TP P + T P QP P P
Sbjct: 1831 RMASMQRTG-VVGQQQGLPSPTPATPTTPTGQQPTTPQTPQPTSQPQPTP 1879
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 42.7 bits (99), Expect = 4e-04
Identities = 47/171 (27%), Positives = 64/171 (37%), Gaps = 10/171 (5%)
Query: 94 SPKPRAATGTTVRGASVKRTGGPAPAQPSPPG-PLPPTPHGPHARAETGASPGSPVRQPL 152
SPK AT T GA+ G P +P P P T +S G P +
Sbjct: 1411 SPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAV 1470
Query: 153 PGPAPQREAAWGRRRVERAAEDKEEVAVE---NKKELSAVCPDAGRRWGQARPDLHAIPA 209
P+P+ A ++V ++ K+ A L AV P + + A P P
Sbjct: 1471 TPPSPKEPPA--PKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEV-PATPSSRRDPI 1527
Query: 210 GVPACLREGKDPGRLLPKVRLLPKVRLLPRGPHK--ARQTLQPDPDAPPSR 258
A L K P L PK L+P +P P K A T + P P S+
Sbjct: 1528 APTATLLSKKTPATLAPKEALIPPAMTVP-SPKKTPAIPTPKEAPATPSSK 1577
Score = 40.8 bits (94), Expect = 0.001
Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 91 PRTSPKPRAATGTTVRG--ASVKRTGGPAP---AQPSPPGPLPPTPHGPHARAETGASP- 144
P+ +P P AAT + +G A+ G P P PSP G TP A A+P
Sbjct: 982 PKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPP 1041
Query: 145 ---GSPVRQPLPGPAPQREAA 162
GSP PLP AP AA
Sbjct: 1042 SPKGSPAATPLPKGAPTTPAA 1062
Score = 38.1 bits (87), Expect = 0.009
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 91 PRTSPKPRAATGTTVRGASVKRTGGPAP-AQPSPPGPLPPTPHG-PHARAETGASPGSPV 148
P+ +P P AAT + +G+ G P P P+PP PP+P G P A T +S G P
Sbjct: 1306 PKGAPTPPAATPPSPKGSP----GTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPT 1361
Query: 149 R-QPLPGPAP 157
GP P
Sbjct: 1362 TPSSKEGPTP 1371
Score = 37.4 bits (85), Expect = 0.015
Identities = 43/194 (22%), Positives = 59/194 (30%), Gaps = 18/194 (9%)
Query: 94 SPKPRAATGTTVRGASVKRT-GGPAP----------AQPSPPGPLPPTPHGPHARAETGA 142
+P P+ A ++ +S K+ PAP P+PP PP+P G A
Sbjct: 902 TPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKW 961
Query: 143 SPGSP-VRQPLPGPAPQREAAWGRRRVERAAEDKEEVAVENKKELSAVCPDAGRRWGQAR 201
+P P P P P + G A + A P A
Sbjct: 962 APTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPA-----VTP 1016
Query: 202 PDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRGPHKARQTLQPDPDAPPSRMHM 261
P PA P P P + P LP+G P P P+ +
Sbjct: 1017 PSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSL 1076
Query: 262 RGT-LPETHLPERP 274
+G P P P
Sbjct: 1077 KGAPTPPAATPPSP 1090
Score = 36.2 bits (82), Expect = 0.034
Identities = 54/202 (26%), Positives = 72/202 (35%), Gaps = 41/202 (20%)
Query: 91 PRTSPK-------PRAATGTTVRGASVKRTGGPAPAQPSPP-GPLPPTPHGPHARAETGA 142
P T+P P + G T A+ GGPA PSP GP P+P G
Sbjct: 1350 PATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKG--------- 1400
Query: 143 SPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVA------VENKKELSAVCPDAGRR 196
P SP PL +P++ A R A K ++ V KK + P G
Sbjct: 1401 DPTSPAVIPL---SPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPA 1457
Query: 197 WGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRGPHKARQTLQPDPDAPP 256
++ D +PA P PK PK P KA T P P P
Sbjct: 1458 TPSSKGD-PTLPAVTPPS-----------PKEPPAPKQVATSSSPKKAPAT--PAPMGAP 1503
Query: 257 SRMHMRGTLPETHLPERPGSTR 278
+ + + P+ +P P S R
Sbjct: 1504 TLPAVIPSSPK-EVPATPSSRR 1524
Score = 35.4 bits (80), Expect = 0.057
Identities = 48/191 (25%), Positives = 62/191 (32%), Gaps = 20/191 (10%)
Query: 91 PRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPP-GPLPP--TPHGPHARAETGASPGSP 147
P+ +P P AAT + +G PA PSP P PP TP P T + G+P
Sbjct: 936 PKGAPTPPAATPPSPKGG---------PATPSPKWAPTPPAATPPSPKGGPATPSPKGAP 986
Query: 148 VRQPLPGPAPQREAAWGRRRVERAAEDKEEVAVENKKELSAVCP---DAGRRWGQARPDL 204
P+P+ A + A V + K A P A P
Sbjct: 987 TPPAATPPSPKGGPA---TPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSP 1043
Query: 205 HAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRGPHKARQTLQPDPDAPPSRMHMRGT 264
PA P P LP + P L P T P P P+ +G
Sbjct: 1044 KGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAAT-PPSPKGGPATPSPKGA 1102
Query: 265 -LPETHLPERP 274
+P P P
Sbjct: 1103 PMPPAATPPSP 1113
Score = 35.0 bits (79), Expect = 0.075
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 94 SPKPRAATGTTVRGASVKRTGGPAP-AQPSPPGPLPPTPHG-----PHARAET--GASPG 145
+P P AAT + +G P+P P PP PP+P G PH A T A+P
Sbjct: 1079 APTPPAATPPSPKGGPAT----PSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPP 1134
Query: 146 SP---VRQPLPGPAPQREAA 162
SP + P P AP AA
Sbjct: 1135 SPKGGLATPPPKGAPTTPAA 1154
Score = 35.0 bits (79), Expect = 0.075
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 91 PRTSPKPRAATGTTVRG--ASVKRTGGPAPAQPSPPGP-------------LPP--TPHG 133
P+ +P P AAT +++G A+ G P PA +PP P PP TP
Sbjct: 1260 PKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPS 1319
Query: 134 PHARAETGASPGSPVRQPLPGPAPQ 158
P T G+P + P+P+
Sbjct: 1320 PKGSPGTPPPKGAPTPPAVTPPSPK 1344
Score = 33.9 bits (76), Expect = 0.17
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 93 TSPKPRAATGT-TVRGASVKRTGGP-----APAQPSPPG-PLPP--TPHGPHARAETGAS 143
T P P+ T +++GA P PA PSP G P+PP TP P T
Sbjct: 1063 TLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPH 1122
Query: 144 PGSPVRQPLPGPAPQ 158
G+P P+P+
Sbjct: 1123 KGAPTTPAATPPSPK 1137
Score = 32.3 bits (72), Expect = 0.48
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 91 PRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPP----GPLPPTPHGPHARAETGASPGS 146
P+ +P P A T + +G ++ P P+ + P GP P P A + T +SP
Sbjct: 861 PKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKK 920
Query: 147 PVRQPLPGPAP 157
P P P
Sbjct: 921 ARATPAPKGIP 931
Score = 32.3 bits (72), Expect = 0.48
Identities = 53/207 (25%), Positives = 66/207 (31%), Gaps = 32/207 (15%)
Query: 91 PRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHG----------PHARAET 140
P+ +P AAT + +G P P+ P PP+P G P A T
Sbjct: 1145 PKGAPTTPAATPPSPKGGLATP---PPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAAT 1201
Query: 141 GASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAVENKK--ELSAVCPDAGRRWG 198
SP + P P AP AA K +A + K + + G
Sbjct: 1202 PPSPKGGLATPSPKGAPTTPAA-------TPPSPKGGLATPSPKGAPTTPAATPPSPKGG 1254
Query: 199 QARPDLHAI---PAGVPACLREG----KDPGRLLPKVRLLPKVRLLP-RGPHKARQTLQP 250
A P PA P L+ G G P V P + P P K T P
Sbjct: 1255 PATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPT--P 1312
Query: 251 DPDAPPSRMHMRGTLPETHLPERPGST 277
PPS GT P P P T
Sbjct: 1313 PAATPPSPKGSPGTPPPKGAPTPPAVT 1339
Score = 31.2 bits (69), Expect = 1.1
Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 30/102 (29%)
Query: 91 PRTSPKPRAATGTTVRG--ASVKRTGGPAPAQPSPPGP------------------LPPT 130
P+ +P P AAT + +G A+ G P +PP P PP+
Sbjct: 1099 PKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPS 1158
Query: 131 PHG----------PHARAETGASPGSPVRQPLPGPAPQREAA 162
P G P A T SP + P P AP AA
Sbjct: 1159 PKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAA 1200
Score = 30.0 bits (66), Expect = 2.4
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 92 RTSPKPRAATGTTVRGASVKR-------TGGPAPAQ-PSPPGPLPPTPH-GPHARAETGA 142
+ + P A T +T +GA + P+P + P+PP PP+P GP A G
Sbjct: 1577 KEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGT 1636
Query: 143 SPGSPV 148
PV
Sbjct: 1637 PTSPPV 1642
Score = 28.1 bits (61), Expect = 9.1
Identities = 58/223 (26%), Positives = 80/223 (35%), Gaps = 46/223 (20%)
Query: 93 TSPKPRAA-TGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASP------- 144
TSP P+ A T V S ++ PA P+P G P P + ++ SP
Sbjct: 1606 TSPSPKEAPTPPAVTPPSPEK----GPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKM 1661
Query: 145 GSPVRQPLPG-PAPQREAAWGRRRVERAAEDKEEVAVENK-----KELSA----VCPDAG 194
G+ V Q G PA + A V A E + + K+ SA +CPD
Sbjct: 1662 GATVPQASKGLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSPPICPDPS 1721
Query: 195 RRWGQARPDLHAIPAGVPACLRE------GKDPGRLLPKVRLLPK-------------VR 235
+ G P PA + ++ GKD PK L P +
Sbjct: 1722 AKNGSKGPLSTVAPAPLLPVQKDSSKTAKGKDASH-SPKGPLAPPESKASTPLTAAAFEK 1780
Query: 236 LLPRGPHKARQTLQPDPDAP-PSRMHMRGTLP--ETHLPERPG 275
+LP+ P A + P P P TLP + LP PG
Sbjct: 1781 VLPK-PESASVSAAPSPPVSLPLAPSPVPTLPPKQQFLPSSPG 1822
>gi|42733592 hypothetical protein LOC399693 [Homo sapiens]
Length = 953
Score = 42.7 bits (99), Expect = 4e-04
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 97 PRAATGTTVRGASVKRTGGPA------PAQPSPPGPLPPTPHGPHARAETGASPGSPVRQ 150
P+ A G +G S +R G P P QP P P ET PG +R
Sbjct: 501 PQRAWGAQRQGPSSQRPGSPPEKRSPFPQQPWSAVATQPCPRRAWTACETWEDPGPRLRN 560
Query: 151 PLPGPAPQREAAWGRRRVERA 171
PL P+P + W V+RA
Sbjct: 561 PLERPSPPAQRPWSSSGVQRA 581
>gi|145309324 FH2 domain containing 1 [Homo sapiens]
Length = 1143
Score = 42.4 bits (98), Expect = 5e-04
Identities = 20/42 (47%), Positives = 23/42 (54%)
Query: 116 PAPAQPSPPGPLPPTPHGPHARAETGASPGSPVRQPLPGPAP 157
P PA P PP P PP+P +R E +SP P PLPG P
Sbjct: 30 PPPAPPPPPPPPPPSPPCSCSREECPSSPPPPPPPPLPGEPP 71
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 42.0 bits (97), Expect = 6e-04
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 94 SPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARA---ETGASPGSPVRQ 150
SP P A + GP PA+PS P P P P GPH A+P P+ +
Sbjct: 94 SPLPPALQPRGAPAVPAAPSPGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLAR 153
Query: 151 PLP-GPAPQREAAWGRRRVERA 171
PLP G RE R RA
Sbjct: 154 PLPQGSVTAREQEQRPRSRRRA 175
Score = 29.6 bits (65), Expect = 3.1
Identities = 28/100 (28%), Positives = 33/100 (33%), Gaps = 32/100 (32%)
Query: 91 PRTSPKPRAATGTTVRGASVKRT-------GGPAPAQPSP----------------PGPL 127
P +P AA + + A +R GG A P P PGPL
Sbjct: 58 PAPRERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPL 117
Query: 128 PPTPHGPHARAETGASPGSPV---------RQPLPGPAPQ 158
P P P R + P PV R PL P PQ
Sbjct: 118 PARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARPLPQ 157
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 42.0 bits (97), Expect = 6e-04
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 94 SPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARA---ETGASPGSPVRQ 150
SP P A + GP PA+PS P P P P GPH A+P P+ +
Sbjct: 94 SPLPPALQPRGAPAVPAAPSPGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLAR 153
Query: 151 PLP-GPAPQREAAWGRRRVERA 171
PLP G RE R RA
Sbjct: 154 PLPQGSVTAREQEQRPRSRRRA 175
Score = 29.6 bits (65), Expect = 3.1
Identities = 28/100 (28%), Positives = 33/100 (33%), Gaps = 32/100 (32%)
Query: 91 PRTSPKPRAATGTTVRGASVKRT-------GGPAPAQPSP----------------PGPL 127
P +P AA + + A +R GG A P P PGPL
Sbjct: 58 PAPRERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPL 117
Query: 128 PPTPHGPHARAETGASPGSPV---------RQPLPGPAPQ 158
P P P R + P PV R PL P PQ
Sbjct: 118 PARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARPLPQ 157
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 41.6 bits (96), Expect = 8e-04
Identities = 43/136 (31%), Positives = 52/136 (38%), Gaps = 27/136 (19%)
Query: 73 GIRGSNSAGNRG----RNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLP 128
G RG AG G R + R R P PR R R GPA PSPP
Sbjct: 130 GPRGQ-CAGRSGDVLRRAGRRRARPPPVPRLPAPRAPR-----RPRGPATPDPSPPAG-- 181
Query: 129 PTPHGPHARAETGASPGSPVRQPLPGPAPQRE-----AAWGRRRVERAAEDKEEVAVENK 183
PHGP RA G PG + PG ++ GRR+ +R A + +
Sbjct: 182 -RPHGPAGRAAPGRRPGCTAQLRAPGRRGRQRLLVHPGGGGRRQWQRLARARRAALL--- 237
Query: 184 KELSAV-----CPDAG 194
L A+ CPD G
Sbjct: 238 -ALGALAHLRRCPDTG 252
Score = 28.5 bits (62), Expect = 7.0
Identities = 38/144 (26%), Positives = 46/144 (31%), Gaps = 31/144 (21%)
Query: 134 PHARAETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAVENKKELSAVCPDA 193
P R + SP R P PQ A +R +R D + + + D
Sbjct: 87 PWGRWDWSPSPRFAARLSTSSPFPQGRA----QRPQRGGVDLPATPGGPRGQCAGRSGDV 142
Query: 194 GRRWGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRGPHKARQTLQPDPD 253
RR G+ R A P VP LP PR P + R PDP
Sbjct: 143 LRRAGRRR----ARPPPVPR-----------------LPA----PRAPRRPRGPATPDPS 177
Query: 254 APPSRMHMRGTLPETHLPERPGST 277
P R H G RPG T
Sbjct: 178 PPAGRPH--GPAGRAAPGRRPGCT 199
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 41.6 bits (96), Expect = 8e-04
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 73 GIRG-SNSAGNRGRNRQLRPRTSPKPRAATGTT-VRGASVKRTGGPAPAQPSPPGPLP-P 129
G RG S +G RG PR PR ATG + +G S GG P PPG P
Sbjct: 740 GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTS----GGDGPH--GPPGERGLP 793
Query: 130 TPHGPHARAETGASPGSPVRQPLPGPAPQR 159
P GP+ PG P + LPG QR
Sbjct: 794 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQR 823
Score = 30.4 bits (67), Expect = 1.8
Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 19/86 (22%)
Query: 81 GNRGRNRQLRPRTSPK---PRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPT-PHGPHA 136
G RG + ++ PR P PR G GP P P PPG P GP
Sbjct: 503 GERGDDGEIGPRGLPGESGPRGLLGPK----------GP-PGIPGPPGVRGMDGPQGPKG 551
Query: 137 RAETGASPGSPVRQPLPG----PAPQ 158
PG P +Q PG P PQ
Sbjct: 552 SLGPQGEPGPPGQQGTPGTQGLPGPQ 577
Score = 29.6 bits (65), Expect = 3.1
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 106 RGASVKRTGGPAPAQPSPPGPLPPT-PHGPHARAETGASPGSPVRQPLPGPAPQREAAWG 164
RG ++ P +P PPGP PT GP PG P GP Q A
Sbjct: 1147 RGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGD 1206
Query: 165 R 165
R
Sbjct: 1207 R 1207
Score = 29.6 bits (65), Expect = 3.1
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 107 GASVKRTGGPAPAQPSPPGPLPPT-PHGPHARAETGASPGSPVRQ 150
GA R P QP PGP P GP + SPGS RQ
Sbjct: 1202 GAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ 1246
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 41.6 bits (96), Expect = 8e-04
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 73 GIRG-SNSAGNRGRNRQLRPRTSPKPRAATGTT-VRGASVKRTGGPAPAQPSPPGPLP-P 129
G RG S +G RG PR PR ATG + +G S GG P PPG P
Sbjct: 719 GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTS----GGDGPH--GPPGERGLP 772
Query: 130 TPHGPHARAETGASPGSPVRQPLPGPAPQR 159
P GP+ PG P + LPG QR
Sbjct: 773 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQR 802
Score = 30.4 bits (67), Expect = 1.8
Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 19/86 (22%)
Query: 81 GNRGRNRQLRPRTSPK---PRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPT-PHGPHA 136
G RG + ++ PR P PR G GP P P PPG P GP
Sbjct: 482 GERGDDGEIGPRGLPGESGPRGLLGPK----------GP-PGIPGPPGVRGMDGPQGPKG 530
Query: 137 RAETGASPGSPVRQPLPG----PAPQ 158
PG P +Q PG P PQ
Sbjct: 531 SLGPQGEPGPPGQQGTPGTQGLPGPQ 556
Score = 29.6 bits (65), Expect = 3.1
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 106 RGASVKRTGGPAPAQPSPPGPLPPT-PHGPHARAETGASPGSPVRQPLPGPAPQREAAWG 164
RG ++ P +P PPGP PT GP PG P GP Q A
Sbjct: 1126 RGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGD 1185
Query: 165 R 165
R
Sbjct: 1186 R 1186
Score = 29.6 bits (65), Expect = 3.1
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 107 GASVKRTGGPAPAQPSPPGPLPPT-PHGPHARAETGASPGSPVRQ 150
GA R P QP PGP P GP + SPGS RQ
Sbjct: 1181 GAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ 1225
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 41.6 bits (96), Expect = 8e-04
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 73 GIRG-SNSAGNRGRNRQLRPRTSPKPRAATGTT-VRGASVKRTGGPAPAQPSPPGPLP-P 129
G RG S +G RG PR PR ATG + +G S GG P PPG P
Sbjct: 826 GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTS----GGDGPH--GPPGERGLP 879
Query: 130 TPHGPHARAETGASPGSPVRQPLPGPAPQR 159
P GP+ PG P + LPG QR
Sbjct: 880 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQR 909
Score = 30.4 bits (67), Expect = 1.8
Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 19/86 (22%)
Query: 81 GNRGRNRQLRPRTSPK---PRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPT-PHGPHA 136
G RG + ++ PR P PR G GP P P PPG P GP
Sbjct: 589 GERGDDGEIGPRGLPGESGPRGLLGPK----------GP-PGIPGPPGVRGMDGPQGPKG 637
Query: 137 RAETGASPGSPVRQPLPG----PAPQ 158
PG P +Q PG P PQ
Sbjct: 638 SLGPQGEPGPPGQQGTPGTQGLPGPQ 663
Score = 29.6 bits (65), Expect = 3.1
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 106 RGASVKRTGGPAPAQPSPPGPLPPT-PHGPHARAETGASPGSPVRQPLPGPAPQREAAWG 164
RG ++ P +P PPGP PT GP PG P GP Q A
Sbjct: 1233 RGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGD 1292
Query: 165 R 165
R
Sbjct: 1293 R 1293
Score = 29.6 bits (65), Expect = 3.1
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 107 GASVKRTGGPAPAQPSPPGPLPPT-PHGPHARAETGASPGSPVRQ 150
GA R P QP PGP P GP + SPGS RQ
Sbjct: 1288 GAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ 1332
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 41.6 bits (96), Expect = 8e-04
Identities = 40/137 (29%), Positives = 51/137 (37%), Gaps = 20/137 (14%)
Query: 89 LRPRTSPKPRAATGTTVRGASVKRTGG--PAPAQPSPPGPLPPTPHGPHARAETGASPGS 146
L+P T VRG + GG P P Q P PLPP A +GA+ +
Sbjct: 207 LQPPTDVSQDPRHMVLVRGLVLPVGGGSAPGPLQSKQPVPLPPA-------APSGATLSA 259
Query: 147 PVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAVENK----------KELSAVCPDAGRR 196
+QPLP PQ + + AA++ E A K L P G
Sbjct: 260 APQQPLPPVPPQYQVPGNLSAAQVAAQNAVEAAKNQKAGLGPRFSPITPLQQAAPGVGPP 319
Query: 197 WGQA-RPDLHAIPAGVP 212
+ QA P L P G P
Sbjct: 320 FSQAPAPQLPPGPPGAP 336
Score = 34.3 bits (77), Expect = 0.13
Identities = 30/74 (40%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 88 QLRPRTSPKPRAATGTTVRGASVKRTGGPAP---AQPSPPGPLPPTPHGPHARAETGASP 144
QLRP P+P+ G + GA TG P P AQP PPG P GP A P
Sbjct: 584 QLRP-PQPQPQGTVGAS--GA----TGQPQPQGTAQP-PPG----APQGPPGAASGPPPP 631
Query: 145 GSPVRQPLPGPAPQ 158
G +R PG PQ
Sbjct: 632 GPILRPQNPGANPQ 645
>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
Length = 1894
Score = 40.8 bits (94), Expect = 0.001
Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 39/183 (21%)
Query: 95 PKPRAATGTTVRGAS----VKRTGGPAPAQPSPPGPLPPTPHGPHARAE--TGASPGS-- 146
PK + T GA +R +PA+PS PG GP +RA + A+PG
Sbjct: 1108 PKHQQVESPTGAGAGGDHRSQRGHAASPARPSRPG-------GPQSRARVPSRAAPGKSE 1160
Query: 147 -PVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAVENKKELSAVCPDAGRRWGQARPDLH 205
P ++PL + Q +A +D+EE A K + + +W +
Sbjct: 1161 PPSKRPLSSKSQQSVSA---------EDDEEEDAGFFKGGKEDLLSSSVPKWPSS----- 1206
Query: 206 AIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRGPHKA--RQTLQPDPDAPPSRMHMRG 263
+ P G GKD L K P + L PRG A ++ L P P + P H+
Sbjct: 1207 STPRG-------GKDADGSLAKEEREPAIALAPRGGSLAPVKRPLPPPPGSSPRASHVPS 1259
Query: 264 TLP 266
LP
Sbjct: 1260 RLP 1262
Score = 32.3 bits (72), Expect = 0.48
Identities = 40/166 (24%), Positives = 62/166 (37%), Gaps = 20/166 (12%)
Query: 74 IRGSNSAGNRGRNRQLRP-----RTSP-KPRAATGTTVRGASVKRTGGPAPAQPSPPGPL 127
++ S A G + + +P SP +P AA + T G AP Q PP P+
Sbjct: 952 VQQSTDADTEGHSPKAQPGSTDRHASPARPPAARSQQHPSVPRRMTPGRAPQQ-QPPPPV 1010
Query: 128 PPTPH--GPHARAETGASPGSP----VRQPLPGPAPQREAAWGRRRVERAAEDKEEVAVE 181
+ H GP +R + G SP P + P P Q + ++ A++
Sbjct: 1011 ATSQHHPGPQSR-DAGRSPSQPRLSLTQAGRPRPTSQGRSHSSSDPYTASSRGMLPTALQ 1069
Query: 182 NKKELSAVCPDAGRRWGQARPDLHAIPAGVPACLREGKDPGRLLPK 227
N+ E DA + ++ A PA K+ LPK
Sbjct: 1070 NQDE------DAQGSYDDDSTEVEAQDVRAPAHAARAKEAAASLPK 1109
Score = 28.9 bits (63), Expect = 5.4
Identities = 48/183 (26%), Positives = 64/183 (34%), Gaps = 33/183 (18%)
Query: 116 PAPAQPSPPGPL----PPTPHGPHARAETGASPGSPVRQPLPGPAPQREAAWGRRRVERA 171
P P+ PSP P P P P R + G AP++ ++ E
Sbjct: 475 PEPSSPSPRAPASSQHPSVPASPQGRNAKDLLLDLKNKILANGGAPRKPQLRAKKAEELD 534
Query: 172 AEDKEEVAVEN--KKELSAVCP-DAGRRWGQARPDL---HAIPAGVPACLREGKDPGRLL 225
+ E E +E S + P D + RP H++ A PGR
Sbjct: 535 LQSTEITGEEELGSREDSPMSPSDTQDQKRTLRPPSRHGHSVVA-----------PGRTA 583
Query: 226 PKVRLLPKVRLLPR--GPHKARQTL--QPDPDAPPSRM----HMRGTLPETHLPERPGST 277
+ R+ LPR G K +L QP P APPS H T +H P P S
Sbjct: 584 VRARM----PALPRREGVDKPGFSLATQPRPGAPPSASASPAHHASTQGTSHRPSLPASL 639
Query: 278 RAN 280
N
Sbjct: 640 NDN 642
>gi|13699803 WAS protein family, member 3 [Homo sapiens]
Length = 502
Score = 40.8 bits (94), Expect = 0.001
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 77 SNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQ------PSPPGPLPPT 130
S SA + NR +P P P+A G+ G PAQ PS P P PP
Sbjct: 290 SASARHMALNRPQQPPPPPPPQAPEGSQASAPMAPADYGMLPAQIIEYYNPSGPPPPPPP 349
Query: 131 PHGPHARAETGASPGSPVRQPLPGPAPQREAA 162
P P A+ + P++ P P A AA
Sbjct: 350 PVIPSAQTAFVSPLQMPMQPPFPASASSTHAA 381
Score = 32.7 bits (73), Expect = 0.37
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 91 PRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASP--GSPV 148
P P P +A+ T TG A P PPGP PP P P + +SP G PV
Sbjct: 366 PMQPPFPASASSTHAAPPHPPSTGLLVTAPP-PPGPPPPPPGPPGPGSSLSSSPMHGPPV 424
Query: 149 RQ 150
+
Sbjct: 425 AE 426
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 40.4 bits (93), Expect = 0.002
Identities = 54/180 (30%), Positives = 65/180 (36%), Gaps = 57/180 (31%)
Query: 81 GNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPP-----GPLPPTPHGPH 135
GN+GR+ L P P A T RG GGP P P PP GPLPP P G
Sbjct: 334 GNKGRSGPLPP--VPLGIAPPPPTPRGPPPPGRGGPPP--PPPPATGRSGPLPPPPPG-- 387
Query: 136 ARAETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAVENKKELSAVCPDAGR 195
+ G P+ P P P P P +G
Sbjct: 388 -------AGGPPMPPPPPPPPPP--------------------------------PSSGN 408
Query: 196 RWGQARPDLHAIPAGVPA-CLREGKDPGRLLPKVRLLPKVRLLPRGPHKARQTLQPDPDA 254
G A P L PA VPA L G G LL ++R ++ P P + LQP P +
Sbjct: 409 --GPAPPPLP--PALVPAGGLAPGGGRGALLDQIRQGIQLNKTPGAPESS--ALQPPPQS 462
Score = 28.5 bits (62), Expect = 7.0
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 22/76 (28%)
Query: 116 PAPAQPSPPGPLPPTPHGPHARAETGASPGSPVRQ--------------------PLPGP 155
P PA G LPP P H + G P P+ P PGP
Sbjct: 163 PTPANEERRGGLPPLPL--HPGGDQGGPPVGPLSLGLATVDIQNPDITSSRYRGLPAPGP 220
Query: 156 APQREAAWGRRRVERA 171
+P + G++++ +A
Sbjct: 221 SPADKKRSGKKKISKA 236
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 40.4 bits (93), Expect = 0.002
Identities = 44/179 (24%), Positives = 67/179 (37%), Gaps = 18/179 (10%)
Query: 91 PRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPP----GPLPPTPHGPHARAETGASPGS 146
P SP P+ + + +R +P+ PSP P+PP+ P + + P
Sbjct: 362 PCQSPVPQRRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVPPSCQSPSPQRRSPVPPSC 421
Query: 147 PVRQPL-PGPAPQREAAWGRRRVERAAEDKEEVAVENKKELSAVCPDAGRRWGQARPDLH 205
P QP P P P E R + + + ++ S + A G + P L
Sbjct: 422 PAPQPRPPPPPPPGERTLAERAYAKPPSHHVKAGFQGRRSYSELAEGAAYA-GASPPWLQ 480
Query: 206 AIPAGVPACLREGKD---PGRLLPKVRLLPKVRLLPRGPHKARQTLQPD----PDAPPS 257
A A +P G + PGR L R +RL +Q + D P +PPS
Sbjct: 481 AEAATLPKPRAYGSELYGPGRPLSPRRAFEGIRL-----RFEKQPSEEDEWAVPTSPPS 534
Score = 28.1 bits (61), Expect = 9.1
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 92 RTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGP---LPPTP----HGPHARAETGASP 144
RT + +A +G R + + + PAP PSP P PP P P R+ P
Sbjct: 320 RTLLQEQARSGGQ-RHSPLSQRHSPAPQCPSPSPPARAAPPCPPCQSPVPQRRSPVPPCP 378
Query: 145 G-----SPVRQPLPGPAPQREA 161
SP P P PQR +
Sbjct: 379 SPQQRRSPASPSCPSPVPQRRS 400
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 91 PRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGSPVRQ 150
PR P+PR R P PA+P PP P PP P P RA G+ R+
Sbjct: 100 PRRKPRPRPQPRARSRSQPGLSAPPPPPARPPPPPP-PPPPPAPRPRAWRGSR-----RR 153
Query: 151 PLPGPAPQ 158
PG PQ
Sbjct: 154 SRPGSRPQ 161
Score = 32.3 bits (72), Expect = 0.48
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 11/126 (8%)
Query: 131 PHGPHARAETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAVENKKELSAVC 190
P G R +G G+ + + EAA G + E EE+ +E +E
Sbjct: 10 PSGSGVRWISGGGGGASPEEAVEKAGKMEEAAAGATKASSRRE-AEEMKLEPLQEREPA- 67
Query: 191 PDAGRRWGQARPDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRGPHKARQTLQP 250
P+ W + D +P+ +P P + P+ + PR +AR QP
Sbjct: 68 PEENLTWSSSGGDEKVLPS-IPLRCHSSSSP--------VCPRRKPRPRPQPRARSRSQP 118
Query: 251 DPDAPP 256
APP
Sbjct: 119 GLSAPP 124
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 40.0 bits (92), Expect = 0.002
Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 19/101 (18%)
Query: 73 GIRG-SNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPT- 130
G++G S S G G + PR P R TG + G P PA PPGP+ P
Sbjct: 306 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPA--GPPGPVGPAG 363
Query: 131 ----PHGPHARAETGAS-----------PGSPVRQPLPGPA 156
P P A+ E G + G P PGPA
Sbjct: 364 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPA 404
Score = 35.8 bits (81), Expect = 0.044
Identities = 36/119 (30%), Positives = 46/119 (38%), Gaps = 15/119 (12%)
Query: 80 AGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPA--PAQPSPPGPLPPTPHGPHAR 137
+G G N P P PR +G T GPA P P PPG PP P GP
Sbjct: 1172 SGKDGANGIPGPIGPPGPRGRSGET----------GPAGPPGNPGPPG--PPGPPGPGID 1219
Query: 138 AETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAVENKKELSAVCPDAGRR 196
A G + P P + + A G R A D ++ N+ E S P+ R+
Sbjct: 1220 MSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIE-SIRSPEGSRK 1277
Score = 30.0 bits (66), Expect = 2.4
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 23/96 (23%)
Query: 81 GNRGRNRQLRPRTSPKPRAATGTT----VRGA-----------SVKRTGGPAP-AQPSPP 124
G+ G P +P P+ TG T RGA + R G P P PP
Sbjct: 858 GDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPP 917
Query: 125 GPLPPTPHGPH----ARAETGASPGSPVRQPLPGPA 156
GP P P G AR ++G PG L GPA
Sbjct: 918 GP--PGPSGKDGPKGARGDSG-PPGRAGEPGLQGPA 950
Score = 29.6 bits (65), Expect = 3.1
Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 81 GNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPA----PAQPSPPGPL-PPTPHGPH 135
G +G Q P P+ A G + G P P + G PP P GP
Sbjct: 591 GPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPA 650
Query: 136 ARAETGASPGSPVRQPLPGP 155
+PG Q LPGP
Sbjct: 651 GERGEQGAPGPSGFQGLPGP 670
Score = 29.6 bits (65), Expect = 3.1
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 20/62 (32%)
Query: 114 GGPAPAQPS----PPGPLPPT-------------PHGPHARA-ETGAS--PGSPVRQPLP 153
G PA PS PPGP+ P+ P GP R+ ETG + PG+P P
Sbjct: 1152 GASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1211
Query: 154 GP 155
GP
Sbjct: 1212 GP 1213
Score = 29.3 bits (64), Expect = 4.1
Identities = 29/105 (27%), Positives = 36/105 (34%), Gaps = 26/105 (24%)
Query: 77 SNSAGNRGRNRQLRPRTSPKPRAATG----------------TTVRGASVKRTGGPAPAQ 120
+ +AG RG + Q P P P G T RG + P
Sbjct: 338 AGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGT 397
Query: 121 PSPPGPL-----PPTPHGPHARAETGA-----SPGSPVRQPLPGP 155
P PGP P T P A+ GA +PG P + PGP
Sbjct: 398 PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGP 442
Score = 28.5 bits (62), Expect = 7.0
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 21/111 (18%)
Query: 73 GIRG-SNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTG--GPAPA-----QPSPP 124
G RG S AG +G N P A G T R G GP+ A +P PP
Sbjct: 531 GERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPP 590
Query: 125 GPL-------------PPTPHGPHARAETGASPGSPVRQPLPGPAPQREAA 162
GP P +G +A PG+P + LPG + AA
Sbjct: 591 GPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAA 641
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 40.0 bits (92), Expect = 0.002
Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 19/101 (18%)
Query: 73 GIRG-SNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPT- 130
G++G S S G G + PR P R TG + G P PA PPGP+ P
Sbjct: 237 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPA--GPPGPVGPAG 294
Query: 131 ----PHGPHARAETGAS-----------PGSPVRQPLPGPA 156
P P A+ E G + G P PGPA
Sbjct: 295 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPA 335
Score = 35.8 bits (81), Expect = 0.044
Identities = 36/119 (30%), Positives = 46/119 (38%), Gaps = 15/119 (12%)
Query: 80 AGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPA--PAQPSPPGPLPPTPHGPHAR 137
+G G N P P PR +G T GPA P P PPG PP P GP
Sbjct: 1103 SGKDGANGIPGPIGPPGPRGRSGET----------GPAGPPGNPGPPG--PPGPPGPGID 1150
Query: 138 AETGASPGSPVRQPLPGPAPQREAAWGRRRVERAAEDKEEVAVENKKELSAVCPDAGRR 196
A G + P P + + A G R A D ++ N+ E S P+ R+
Sbjct: 1151 MSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIE-SIRSPEGSRK 1208
Score = 30.0 bits (66), Expect = 2.4
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 23/96 (23%)
Query: 81 GNRGRNRQLRPRTSPKPRAATGTT----VRGA-----------SVKRTGGPAP-AQPSPP 124
G+ G P +P P+ TG T RGA + R G P P PP
Sbjct: 789 GDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPP 848
Query: 125 GPLPPTPHGPH----ARAETGASPGSPVRQPLPGPA 156
GP P P G AR ++G PG L GPA
Sbjct: 849 GP--PGPSGKDGPKGARGDSG-PPGRAGEPGLQGPA 881
Score = 29.6 bits (65), Expect = 3.1
Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 81 GNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTGGPA----PAQPSPPGPL-PPTPHGPH 135
G +G Q P P+ A G + G P P + G PP P GP
Sbjct: 522 GPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPA 581
Query: 136 ARAETGASPGSPVRQPLPGP 155
+PG Q LPGP
Sbjct: 582 GERGEQGAPGPSGFQGLPGP 601
Score = 29.6 bits (65), Expect = 3.1
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 20/62 (32%)
Query: 114 GGPAPAQPS----PPGPLPPT-------------PHGPHARA-ETGAS--PGSPVRQPLP 153
G PA PS PPGP+ P+ P GP R+ ETG + PG+P P
Sbjct: 1083 GASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1142
Query: 154 GP 155
GP
Sbjct: 1143 GP 1144
Score = 29.3 bits (64), Expect = 4.1
Identities = 29/105 (27%), Positives = 36/105 (34%), Gaps = 26/105 (24%)
Query: 77 SNSAGNRGRNRQLRPRTSPKPRAATG----------------TTVRGASVKRTGGPAPAQ 120
+ +AG RG + Q P P P G T RG + P
Sbjct: 269 AGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGT 328
Query: 121 PSPPGPL-----PPTPHGPHARAETGA-----SPGSPVRQPLPGP 155
P PGP P T P A+ GA +PG P + PGP
Sbjct: 329 PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGP 373
Score = 28.5 bits (62), Expect = 7.0
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 21/111 (18%)
Query: 73 GIRG-SNSAGNRGRNRQLRPRTSPKPRAATGTTVRGASVKRTG--GPAPA-----QPSPP 124
G RG S AG +G N P A G T R G GP+ A +P PP
Sbjct: 462 GERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPP 521
Query: 125 GPL-------------PPTPHGPHARAETGASPGSPVRQPLPGPAPQREAA 162
GP P +G +A PG+P + LPG + AA
Sbjct: 522 GPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAA 572
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 40.0 bits (92), Expect = 0.002
Identities = 48/202 (23%), Positives = 65/202 (32%), Gaps = 22/202 (10%)
Query: 93 TSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGSPVRQPL 152
T+PK A T + K AP +P+P P P P P A T SP
Sbjct: 328 TTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKE 387
Query: 153 PGPAPQREAAWGRRR-----VERAAEDKEEVAVENKKELSAVCPDAGRRWGQARPDLHAI 207
P P + A + + A +E + KE + P +P
Sbjct: 388 PAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTP 447
Query: 208 PAGVPACLRE-------------GKDPGRLLPK--VRLLPKVRLLPRGPHKARQTLQPDP 252
P +E K+P PK PK +L P P K T P+
Sbjct: 448 KEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPK-KLTPTTPEKLAPT-TPEK 505
Query: 253 DAPPSRMHMRGTLPETHLPERP 274
AP + + T PE P P
Sbjct: 506 PAPTTPEELAPTTPEEPTPTTP 527
Score = 38.5 bits (88), Expect = 0.007
Identities = 45/205 (21%), Positives = 65/205 (31%), Gaps = 14/205 (6%)
Query: 87 RQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGS 146
++L P T+ +P + T + K T P +P+P P P P P A T +
Sbjct: 597 KELAPTTTKEPTSTTCDKPAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPA 656
Query: 147 PVRQPLPGPAPQREAAWGRRRVERAAEDK------EEVAVENKKELSAVCPDAGRRWGQA 200
P PAP+ A + DK +E A KE + P
Sbjct: 657 PTTP--KKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTTPE 714
Query: 201 RPDLHAIPAGVPACLRE----GKDPGRLLPKVRLLPKVRLLPRGPHK--ARQTLQPDPDA 254
P P +E K P P++ P + L P + T P
Sbjct: 715 TPPPTTSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGVPTTKTPAATK 774
Query: 255 PPSRMHMRGTLPETHLPERPGSTRA 279
P + E L P +T A
Sbjct: 775 PEMTTTAKDKTTERDLRTTPETTTA 799
Score = 35.4 bits (80), Expect = 0.057
Identities = 53/199 (26%), Positives = 73/199 (36%), Gaps = 26/199 (13%)
Query: 93 TSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGSPVRQPL 152
T+PK A T + K+ P +P+P P PTP P A T P +P
Sbjct: 296 TTPKEPAPT-------TPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEP-APTTPKE 347
Query: 153 PGP-APQREAAWGRRRVERAAEDKEEVAVENKKELSAVCP-DAGRRWGQARPDLHAIPA- 209
P P AP++ A + E A +E A KE S P + ++ P PA
Sbjct: 348 PAPTAPKKPAPTTPK--EPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAP 405
Query: 210 ----GVPACLRE-----GKDPGRLLPK--VRLLPKVRLLPRGPHKARQTLQPDPDAPPSR 258
P +E K+P PK PK + P P + T +P AP +
Sbjct: 406 TTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPK-KPAPTTPKEPAPTTPKEP-APTTT 463
Query: 259 MHMRGTLPETHLPERPGST 277
T P+ P P T
Sbjct: 464 KKPAPTTPKEPAPTTPKET 482
Score = 34.7 bits (78), Expect = 0.098
Identities = 19/69 (27%), Positives = 27/69 (39%)
Query: 93 TSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGSPVRQPL 152
T+PK A T T + ++ P +P+P P P P P A T +P
Sbjct: 273 TTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKE 332
Query: 153 PGPAPQREA 161
P P + A
Sbjct: 333 PAPTTKEPA 341
Score = 33.5 bits (75), Expect = 0.22
Identities = 19/75 (25%), Positives = 28/75 (37%)
Query: 88 QLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGSP 147
+L P T KP T + + + P +P+P P P+ P A T +P
Sbjct: 497 KLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAP 556
Query: 148 VRQPLPGPAPQREAA 162
P P +E A
Sbjct: 557 TTPKEPAPTTPKETA 571
Score = 32.7 bits (73), Expect = 0.37
Identities = 48/190 (25%), Positives = 65/190 (34%), Gaps = 26/190 (13%)
Query: 91 PRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGSPVRQ 150
P T +P T + K+ P + +P P P P P A T +P
Sbjct: 468 PTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTP 527
Query: 151 PLPGPAPQREAAWGRRRVERAAEDKEEVAVENKKELSAVCPDAGRRWGQARPDLHAIPAG 210
P P + AA + E A +E A KE + P + P G
Sbjct: 528 EEPAPTTPKAAAPNTPK-EPAPTTPKEPAPTTPKEPAPTTP---------KETAPTTPKG 577
Query: 211 -VPACLREGKDPGRLLPKVRLLPKVRLLPRGPHKARQTL--QPDPDAPPSRMHMRGTLPE 267
P L K+P PK + PK L P + T +P P P +GT P
Sbjct: 578 TAPTTL---KEPAPTTPK-KPAPK-ELAPTTTKEPTSTTCDKPAPTTP------KGTAPT 626
Query: 268 THLPERPGST 277
T P+ P T
Sbjct: 627 T--PKEPAPT 634
Score = 32.0 bits (71), Expect = 0.63
Identities = 45/199 (22%), Positives = 62/199 (31%), Gaps = 17/199 (8%)
Query: 93 TSPKPRAATGTTVRGASVK-------RTGGPAPAQPSPPGPLPPTPHGPHARAETGASPG 145
T+PK A T T + K ++ P +PSP P P P A T
Sbjct: 383 TTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKP 442
Query: 146 SPVRQPLPGPAPQREAAWGRRRVERAAEDKE-------EVAVENKKELSAVCPDAGRRWG 198
+P P P +E A + KE E A K+L+ P+
Sbjct: 443 APTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTT 502
Query: 199 QARPDLHAIPAGVPACLREGKDPGRLLPKVRLLPKVRLLPRGPHKARQTLQPDPDAPPSR 258
+P P + E P PK P P + T +P AP +
Sbjct: 503 PEKP-APTTPEELAPTTPEEPTPTTPEEPAPTTPKA-AAPNTPKEPAPTTPKEP-APTTP 559
Query: 259 MHMRGTLPETHLPERPGST 277
T P+ P P T
Sbjct: 560 KEPAPTTPKETAPTTPKGT 578
Score = 31.6 bits (70), Expect = 0.83
Identities = 19/76 (25%), Positives = 27/76 (35%)
Query: 87 RQLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGS 146
++L P T K T + + P +P+P P P P P A A +
Sbjct: 488 KKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPA 547
Query: 147 PVRQPLPGPAPQREAA 162
P P P +E A
Sbjct: 548 PTTPKEPAPTTPKEPA 563
Score = 31.6 bits (70), Expect = 0.83
Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 3/103 (2%)
Query: 88 QLRPRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGSP 147
+L P T +P T + K P +P+P P P P P A T +P
Sbjct: 513 ELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAP 572
Query: 148 VRQPLPGPAPQREAAWGRRRVERAAEDKEEVAVENKKELSAVC 190
P +E A + KE K+ S C
Sbjct: 573 TTPKGTAPTTLKEPA---PTTPKKPAPKELAPTTTKEPTSTTC 612
Score = 29.6 bits (65), Expect = 3.1
Identities = 38/183 (20%), Positives = 50/183 (27%), Gaps = 12/183 (6%)
Query: 96 KPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGSPV-RQPLPG 154
KP TT +G ++ P P P P P P +P P
Sbjct: 196 KPTPKAETTTKGPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSA 255
Query: 155 PAPQREAAWGRRRVERAAEDKEEVAVENKKELSAVCPDAGRRWGQARPDLHAIPAGVPAC 214
P +E A + KE K+ A + P PA
Sbjct: 256 PTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTP- 314
Query: 215 LREGKDPGRLLPKVRLLPKVRLLPRGPHKARQTLQPDPDAPPSRMHMRGTLPETHLPERP 274
K+P PK P+ P A T +P P P P P+ P
Sbjct: 315 ----KEPAPTTPK----EPTPTTPKEP--APTTKEPAPTTPKEPAPTAPKKPAPTTPKEP 364
Query: 275 GST 277
T
Sbjct: 365 APT 367
Score = 28.9 bits (63), Expect = 5.4
Identities = 17/72 (23%), Positives = 23/72 (31%)
Query: 91 PRTSPKPRAATGTTVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGSPVRQ 150
P T +P T + K+ P +P+P P P P T +P
Sbjct: 444 PTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTP 503
Query: 151 PLPGPAPQREAA 162
P P E A
Sbjct: 504 EKPAPTTPEELA 515
Score = 28.5 bits (62), Expect = 7.0
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 93 TSPKPRAATGT-----TVRGASVKRTGGPAPAQPSPPGPLPPTPHGPHARAETGASPGSP 147
T+PK A T T T + + T PAP P P P P +P P
Sbjct: 242 TTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEP 301
Query: 148 VRQPLPGPAP 157
PAP
Sbjct: 302 APTTPKKPAP 311
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,701,903
Number of Sequences: 37866
Number of extensions: 1072173
Number of successful extensions: 17294
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 1257
Number of HSP's that attempted gapping in prelim test: 9469
Number of HSP's gapped (non-prelim): 6399
length of query: 284
length of database: 18,247,518
effective HSP length: 101
effective length of query: 183
effective length of database: 14,423,052
effective search space: 2639418516
effective search space used: 2639418516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.