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Search of human proteins with 113425552
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113425552 PREDICTED: hypothetical protein [Homo sapiens]
(153 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169208800 PREDICTED: hypothetical protein [Homo sapiens] 328 8e-91
gi|113425552 PREDICTED: hypothetical protein [Homo sapiens] 328 8e-91
gi|113425159 PREDICTED: hypothetical protein [Homo sapiens] 328 8e-91
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 38 0.003
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 38 0.003
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 38 0.003
gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo ... 38 0.003
gi|39812378 RAN binding protein 9 [Homo sapiens] 37 0.009
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 36 0.015
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 36 0.015
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 36 0.015
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 35 0.019
gi|21704287 sialidase 4 [Homo sapiens] 35 0.019
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 35 0.025
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 35 0.025
gi|48762934 alpha 2 type I collagen [Homo sapiens] 35 0.033
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 34 0.056
gi|110832843 TBP-associated factor 4 [Homo sapiens] 33 0.073
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 33 0.073
gi|94536858 kinesin family member C3 isoform 1 [Homo sapiens] 33 0.073
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 33 0.095
gi|6912492 mitogen-activated protein kinase 8 interacting protei... 32 0.16
gi|7706537 mitogen-activated protein kinase 8 interacting protei... 32 0.16
gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens] 32 0.28
gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens] 32 0.28
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ... 32 0.28
gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens] 32 0.28
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ... 32 0.28
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 32 0.28
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 31 0.36
>gi|169208800 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 328 bits (842), Expect = 8e-91
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MRFNCIKGFFSMGFQRRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPL 60
MRFNCIKGFFSMGFQRRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPL
Sbjct: 1 MRFNCIKGFFSMGFQRRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPL 60
Query: 61 LCGPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDA 120
LCGPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDA
Sbjct: 61 LCGPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDA 120
Query: 121 GAGRGDPGCFFSRPHNEDRLKLAFISGPGTGRH 153
GAGRGDPGCFFSRPHNEDRLKLAFISGPGTGRH
Sbjct: 121 GAGRGDPGCFFSRPHNEDRLKLAFISGPGTGRH 153
>gi|113425552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 328 bits (842), Expect = 8e-91
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MRFNCIKGFFSMGFQRRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPL 60
MRFNCIKGFFSMGFQRRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPL
Sbjct: 1 MRFNCIKGFFSMGFQRRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPL 60
Query: 61 LCGPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDA 120
LCGPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDA
Sbjct: 61 LCGPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDA 120
Query: 121 GAGRGDPGCFFSRPHNEDRLKLAFISGPGTGRH 153
GAGRGDPGCFFSRPHNEDRLKLAFISGPGTGRH
Sbjct: 121 GAGRGDPGCFFSRPHNEDRLKLAFISGPGTGRH 153
>gi|113425159 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 328 bits (842), Expect = 8e-91
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MRFNCIKGFFSMGFQRRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPL 60
MRFNCIKGFFSMGFQRRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPL
Sbjct: 1 MRFNCIKGFFSMGFQRRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPL 60
Query: 61 LCGPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDA 120
LCGPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDA
Sbjct: 61 LCGPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDA 120
Query: 121 GAGRGDPGCFFSRPHNEDRLKLAFISGPGTGRH 153
GAGRGDPGCFFSRPHNEDRLKLAFISGPGTGRH
Sbjct: 121 GAGRGDPGCFFSRPHNEDRLKLAFISGPGTGRH 153
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 38.1 bits (87), Expect = 0.003
Identities = 38/117 (32%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 18 ESGVPSE---GSFPAGQHSSAPRGEGD--GAPSAGPEAHFHSSRIQPLLCGPGLQRVAAA 72
E G+P FP + P G+ G P E F P PG+ A
Sbjct: 789 ERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPP--GPPGVVGPQGA 846
Query: 73 AYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAG-RGDPG 128
A E P+ +G P GP + G PG A + G PG AP +D AG RG PG
Sbjct: 847 AGETGPMGERGHPGPPGPPGEQGLPGTA-GKEGTKGDPGPPGAPGKDGPAGLRGFPG 902
Score = 28.1 bits (61), Expect = 3.1
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 18 ESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCG-PGLQRVAAAAYEQ 76
+ G P P Q + P GE GP+ +P L G PG ++
Sbjct: 564 QQGTPGTQGLPGPQGAIGPHGE------KGPQG-------KPGLPGMPGSDGPPGHPGKE 610
Query: 77 SPIHPQGRFLPAGPRPQMGWPG 98
P +G P+GP+ +G+PG
Sbjct: 611 GPPGTKGNQGPSGPQGPLGYPG 632
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 38.1 bits (87), Expect = 0.003
Identities = 38/117 (32%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 18 ESGVPSE---GSFPAGQHSSAPRGEGD--GAPSAGPEAHFHSSRIQPLLCGPGLQRVAAA 72
E G+P FP + P G+ G P E F P PG+ A
Sbjct: 768 ERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPP--GPPGVVGPQGA 825
Query: 73 AYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAG-RGDPG 128
A E P+ +G P GP + G PG A + G PG AP +D AG RG PG
Sbjct: 826 AGETGPMGERGHPGPPGPPGEQGLPGTA-GKEGTKGDPGPPGAPGKDGPAGLRGFPG 881
Score = 28.1 bits (61), Expect = 3.1
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 18 ESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCG-PGLQRVAAAAYEQ 76
+ G P P Q + P GE GP+ +P L G PG ++
Sbjct: 543 QQGTPGTQGLPGPQGAIGPHGE------KGPQG-------KPGLPGMPGSDGPPGHPGKE 589
Query: 77 SPIHPQGRFLPAGPRPQMGWPG 98
P +G P+GP+ +G+PG
Sbjct: 590 GPPGTKGNQGPSGPQGPLGYPG 611
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 38.1 bits (87), Expect = 0.003
Identities = 38/117 (32%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 18 ESGVPSE---GSFPAGQHSSAPRGEGD--GAPSAGPEAHFHSSRIQPLLCGPGLQRVAAA 72
E G+P FP + P G+ G P E F P PG+ A
Sbjct: 875 ERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPP--GPPGVVGPQGA 932
Query: 73 AYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAG-RGDPG 128
A E P+ +G P GP + G PG A + G PG AP +D AG RG PG
Sbjct: 933 AGETGPMGERGHPGPPGPPGEQGLPGTA-GKEGTKGDPGPPGAPGKDGPAGLRGFPG 988
Score = 28.1 bits (61), Expect = 3.1
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 18 ESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCG-PGLQRVAAAAYEQ 76
+ G P P Q + P GE GP+ +P L G PG ++
Sbjct: 650 QQGTPGTQGLPGPQGAIGPHGE------KGPQG-------KPGLPGMPGSDGPPGHPGKE 696
Query: 77 SPIHPQGRFLPAGPRPQMGWPG 98
P +G P+GP+ +G+PG
Sbjct: 697 GPPGTKGNQGPSGPQGPLGYPG 718
>gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo
sapiens]
Length = 1048
Score = 38.1 bits (87), Expect = 0.003
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 22 PSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRI--QPLLCGPGLQRVAAAAYEQSPI 79
P S P + + RGEGDG E + +P + GL A E
Sbjct: 193 PPHNSLPKPEPEAKTRGEGDGRGCEKAERRPERPEVKKEPPVKANGLPAGPEPASEPGSP 252
Query: 80 HPQGRFLPAG---PRPQMGWPGHAILQPGRAARP------GAHR 114
+P+G +P G P GW H+ +PG A P G HR
Sbjct: 253 YPEGPRVPGGGEQPAQPNGWQYHSPSRPGSTAFPSQDGETGGHR 296
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 36.6 bits (83), Expect = 0.009
Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 23 SEGSFPAGQHSSAPRGEGDGAPSAG-----PEAHFHSSRIQPLLCGPGLQRVAAAAYEQS 77
S GS PAG GEG GA +A P ++ P P +AAA
Sbjct: 42 SAGSSPAGSPGGGAGGEGLGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASG 101
Query: 78 PIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAH 113
P P G L AGP P G P A++ AA P H
Sbjct: 102 PPAPPG--LAAGPGPAGGAPTPALVAGSSAAAPFPH 135
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 35.8 bits (81), Expect = 0.015
Identities = 33/109 (30%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 20 GVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAAAYEQSPI 79
G+P E P + RG +AGP + PG A E P
Sbjct: 305 GLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAG------PPGFPGAVGAKGEAGPQ 358
Query: 80 HPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAGRGDPG 128
P+G P G R + G PG A G A PGA P A G PG
Sbjct: 359 GPRGSEGPQGVRGEPGPPGPA-GAAGPAGNPGADGQP--GAKGANGAPG 404
Score = 34.7 bits (78), Expect = 0.033
Identities = 39/120 (32%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
Query: 18 ESGVPSEGSF--PAGQHSSA----PRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAA 71
E GVP PAG+ A P G A G + S Q L G A
Sbjct: 597 ERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAG 656
Query: 72 AAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQ--PGRAARPGAHRAPIQDAGAG-RGDPG 128
EQ G P+G R + G+PG +Q PG A GA+ AP D G G PG
Sbjct: 657 KPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPG 716
Score = 30.8 bits (68), Expect = 0.47
Identities = 34/117 (29%), Positives = 38/117 (32%), Gaps = 6/117 (5%)
Query: 18 ESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAAAYEQS 77
E G P FP + P+G S GP S GL
Sbjct: 486 ERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPG 545
Query: 78 PIHPQGRFLPAGPRPQMGWPG-----HAILQPGRAARPGAHRAPIQDAGAG-RGDPG 128
P G+ P GP Q G PG A Q G PG A + AG RG PG
Sbjct: 546 SPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG 602
Score = 28.5 bits (62), Expect = 2.3
Identities = 29/101 (28%), Positives = 33/101 (32%), Gaps = 19/101 (18%)
Query: 16 RRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAAAYE 75
R E G P PAG A DG P A + PG+
Sbjct: 370 RGEPGPPG----PAGAAGPAGNPGADGQPGA-----------KGANGAPGIAGAPGFPGA 414
Query: 76 QSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAP 116
+ P PQG P GP+ G PG PG GA P
Sbjct: 415 RGPSGPQGPGGPPGPKGNSGEPG----APGSKGDTGAKGEP 451
Score = 28.5 bits (62), Expect = 2.3
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 64 PGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAG 123
PG Q + A+ E+ P P G AGP + GR PGA +P +D G
Sbjct: 982 PGKQGPSGASGERGPPGPMGPPGLAGPPGE----------SGREGAPGAEGSPGRDGSPG 1031
Query: 124 -RGDPG 128
+GD G
Sbjct: 1032 AKGDRG 1037
Score = 27.7 bits (60), Expect = 4.0
Identities = 38/112 (33%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 18 ESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAAAYEQS 77
ESG PS + P G AP G+ P GP G A A +
Sbjct: 783 ESG-PSGPAGPTGARG-APGDRGEPGPP-GPAGFAGPPGADGQPGAKGEPGDAGAKGDAG 839
Query: 78 PIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAGR-GDPG 128
P P G P GP +G PG A G A PGA P AGR G PG
Sbjct: 840 PPGPAGPAGPPGPIGNVGAPG-AKGARGSAGPPGATGFP---GAAGRVGPPG 887
Score = 26.9 bits (58), Expect = 6.8
Identities = 33/121 (27%), Positives = 45/121 (37%), Gaps = 8/121 (6%)
Query: 13 GFQRRESGVPSEGSFPAGQHSSAPRGE-GDGAPSAGPEAHFHSSRIQPLLCGP----GLQ 67
G RE +EGS P S +G+ G+ P+ P A P+ GP G +
Sbjct: 1010 GESGREGAPGAEGS-PGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPV--GPAGKSGDR 1066
Query: 68 RVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAGRGDP 127
A P+ P G PAGP+ G G Q R + + +Q G P
Sbjct: 1067 GETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSP 1126
Query: 128 G 128
G
Sbjct: 1127 G 1127
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 35.8 bits (81), Expect = 0.015
Identities = 41/129 (31%), Positives = 49/129 (37%), Gaps = 17/129 (13%)
Query: 16 RRESGVPSEGSFPAGQHSSAPRGE----GDGAPSA-----GPEAHFHSSRIQPLLCG--- 63
R +SG P P Q + P GE GD PS GP+ I L
Sbjct: 932 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 991
Query: 64 ---PGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDA 120
PGL + +Q G P GP G G A +PGR PGA P +D
Sbjct: 992 RGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG-EPGREGSPGADGPPGRDG 1050
Query: 121 GAG-RGDPG 128
AG +GD G
Sbjct: 1051 AAGVKGDRG 1059
Score = 33.5 bits (75), Expect = 0.073
Identities = 38/121 (31%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 18 ESGVPSEGSFPAGQHSSAPRGE-GDGAPS--AGPEAHFHSSRIQPLLCG-PGLQRVAAAA 73
E G P FP + P+G G+ PS AGP+ + P G PGL
Sbjct: 508 ERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKG----ANGDPGRPGEPGLPGARGLT 563
Query: 74 YEQSPIHPQGRFLPAGPRPQMGWPG-----HAILQPGRAARPGAHRAPIQDAGAG-RGDP 127
PQG+ P+G + G PG A QPG PG A + AG +G P
Sbjct: 564 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP 623
Query: 128 G 128
G
Sbjct: 624 G 624
Score = 33.1 bits (74), Expect = 0.095
Identities = 35/128 (27%), Positives = 46/128 (35%), Gaps = 18/128 (14%)
Query: 19 SGVPSEGSFPAGQHSSAPRGEGDGAPSAGPE-AHFHSSRI--QPLLCGPGLQRVAAAAYE 75
SG P E P RG+ GP+ A+ + + L PGL+ + E
Sbjct: 578 SGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGE 637
Query: 76 QSPIHPQGRFLPAGPRPQMGWPGHAILQ--------PGRAARPGAHRAPIQDAGAG---- 123
P G PAG R + G PG + Q PG +PG P + G
Sbjct: 638 TGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGP 697
Query: 124 ---RGDPG 128
RG PG
Sbjct: 698 RGERGFPG 705
Score = 32.7 bits (73), Expect = 0.12
Identities = 38/136 (27%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 8 GFFSMGFQRRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPL------L 61
GF + E+G P+ P G + PRGE S GP + +
Sbjct: 366 GFPGAPGAKGEAG-PTGARGPEG--AQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSA 422
Query: 62 CGPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAIL--------QPGRAARPGAH 113
PG+ + P PQG P GP+ Q G PG A +PG A GA
Sbjct: 423 GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAP 482
Query: 114 RAPIQDAGAG-RGDPG 128
++ G RG+PG
Sbjct: 483 GPAGEEGKRGARGEPG 498
Score = 30.0 bits (66), Expect = 0.81
Identities = 40/142 (28%), Positives = 46/142 (32%), Gaps = 23/142 (16%)
Query: 16 RRESGVPSEGSFPAGQHSSAPRG----------EGDGAPSAGPEAH-------FHSSRIQ 58
R E G P E P Q PRG +G P+ P A R
Sbjct: 698 RGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGA 757
Query: 59 PLLCGPGLQR--VAAAAYEQSPIHPQGRFL--PAGPRPQMGWPGH--AILQPGRAARPGA 112
+ GP R V E +P GR L P GP G G + PG A GA
Sbjct: 758 AGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA 817
Query: 113 HRAPIQDAGAGRGDPGCFFSRP 134
AP + G P F P
Sbjct: 818 RGAPGERGETGPPGPAGFAGPP 839
Score = 29.3 bits (64), Expect = 1.4
Identities = 33/114 (28%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Query: 20 GVPSEGSFPAGQHSSAPRGEGDGAPS-AGPEAHFHSSRIQPLLCGPGLQRVAAAAYEQSP 78
G+P E ++ RG DG P AGP + GPG A E P
Sbjct: 327 GLPGERGRTGPAGAAGARGN-DGQPGPAGPPGPVGPAG------GPGFPGAPGAKGEAGP 379
Query: 79 IHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAG----RGDPG 128
+G GPR + G PG + G + PG P AG G PG
Sbjct: 380 TGARGPEGAQGPRGEPGTPG-SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPG 432
Score = 27.7 bits (60), Expect = 4.0
Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 16 RRESGV--PSEGSFPAG----QHSSAPRGEGDGAPSAGP---EAHFHSSRIQPLLCGPGL 66
R E+G P S PAG Q PRG+ A G + H + +Q L PG
Sbjct: 1088 RGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGP 1147
Query: 67 QRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAG-RG 125
A+ P P+G P GP + G G PG PG + AG G
Sbjct: 1148 SGDQGASGPAGPSGPRGPPGPVGPSGKDGANG----IPGPIGPPGPRGRSGETGPAGPPG 1203
Query: 126 DPG 128
+PG
Sbjct: 1204 NPG 1206
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 35.8 bits (81), Expect = 0.015
Identities = 41/129 (31%), Positives = 49/129 (37%), Gaps = 17/129 (13%)
Query: 16 RRESGVPSEGSFPAGQHSSAPRGE----GDGAPSA-----GPEAHFHSSRIQPLLCG--- 63
R +SG P P Q + P GE GD PS GP+ I L
Sbjct: 863 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 922
Query: 64 ---PGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDA 120
PGL + +Q G P GP G G A +PGR PGA P +D
Sbjct: 923 RGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG-EPGREGSPGADGPPGRDG 981
Query: 121 GAG-RGDPG 128
AG +GD G
Sbjct: 982 AAGVKGDRG 990
Score = 33.5 bits (75), Expect = 0.073
Identities = 38/121 (31%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 18 ESGVPSEGSFPAGQHSSAPRGE-GDGAPS--AGPEAHFHSSRIQPLLCG-PGLQRVAAAA 73
E G P FP + P+G G+ PS AGP+ + P G PGL
Sbjct: 439 ERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKG----ANGDPGRPGEPGLPGARGLT 494
Query: 74 YEQSPIHPQGRFLPAGPRPQMGWPG-----HAILQPGRAARPGAHRAPIQDAGAG-RGDP 127
PQG+ P+G + G PG A QPG PG A + AG +G P
Sbjct: 495 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP 554
Query: 128 G 128
G
Sbjct: 555 G 555
Score = 33.1 bits (74), Expect = 0.095
Identities = 35/128 (27%), Positives = 46/128 (35%), Gaps = 18/128 (14%)
Query: 19 SGVPSEGSFPAGQHSSAPRGEGDGAPSAGPE-AHFHSSRI--QPLLCGPGLQRVAAAAYE 75
SG P E P RG+ GP+ A+ + + L PGL+ + E
Sbjct: 509 SGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGE 568
Query: 76 QSPIHPQGRFLPAGPRPQMGWPGHAILQ--------PGRAARPGAHRAPIQDAGAG---- 123
P G PAG R + G PG + Q PG +PG P + G
Sbjct: 569 TGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGP 628
Query: 124 ---RGDPG 128
RG PG
Sbjct: 629 RGERGFPG 636
Score = 32.7 bits (73), Expect = 0.12
Identities = 38/136 (27%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 8 GFFSMGFQRRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPL------L 61
GF + E+G P+ P G + PRGE S GP + +
Sbjct: 297 GFPGAPGAKGEAG-PTGARGPEG--AQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSA 353
Query: 62 CGPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAIL--------QPGRAARPGAH 113
PG+ + P PQG P GP+ Q G PG A +PG A GA
Sbjct: 354 GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAP 413
Query: 114 RAPIQDAGAG-RGDPG 128
++ G RG+PG
Sbjct: 414 GPAGEEGKRGARGEPG 429
Score = 30.0 bits (66), Expect = 0.81
Identities = 40/142 (28%), Positives = 46/142 (32%), Gaps = 23/142 (16%)
Query: 16 RRESGVPSEGSFPAGQHSSAPRG----------EGDGAPSAGPEAH-------FHSSRIQ 58
R E G P E P Q PRG +G P+ P A R
Sbjct: 629 RGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGA 688
Query: 59 PLLCGPGLQR--VAAAAYEQSPIHPQGRFL--PAGPRPQMGWPGH--AILQPGRAARPGA 112
+ GP R V E +P GR L P GP G G + PG A GA
Sbjct: 689 AGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA 748
Query: 113 HRAPIQDAGAGRGDPGCFFSRP 134
AP + G P F P
Sbjct: 749 RGAPGERGETGPPGPAGFAGPP 770
Score = 29.3 bits (64), Expect = 1.4
Identities = 33/114 (28%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Query: 20 GVPSEGSFPAGQHSSAPRGEGDGAPS-AGPEAHFHSSRIQPLLCGPGLQRVAAAAYEQSP 78
G+P E ++ RG DG P AGP + GPG A E P
Sbjct: 258 GLPGERGRTGPAGAAGARGN-DGQPGPAGPPGPVGPAG------GPGFPGAPGAKGEAGP 310
Query: 79 IHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAG----RGDPG 128
+G GPR + G PG + G + PG P AG G PG
Sbjct: 311 TGARGPEGAQGPRGEPGTPG-SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPG 363
Score = 27.7 bits (60), Expect = 4.0
Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 16 RRESGV--PSEGSFPAG----QHSSAPRGEGDGAPSAGP---EAHFHSSRIQPLLCGPGL 66
R E+G P S PAG Q PRG+ A G + H + +Q L PG
Sbjct: 1019 RGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGP 1078
Query: 67 QRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAG-RG 125
A+ P P+G P GP + G G PG PG + AG G
Sbjct: 1079 SGDQGASGPAGPSGPRGPPGPVGPSGKDGANG----IPGPIGPPGPRGRSGETGPAGPPG 1134
Query: 126 DPG 128
+PG
Sbjct: 1135 NPG 1137
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 35.4 bits (80), Expect = 0.019
Identities = 41/132 (31%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 30 GQHSS---APRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAAAYEQSPIHPQGRFL 86
GQH AP GDGA + P AH R L+ GPGL + +++P P L
Sbjct: 254 GQHLHQLLAPGLCGDGA-AVWPAAHAGRPRQLRLVHGPGLGLLCLGGIQRNP--PALSCL 310
Query: 87 PAGPRPQMGWPGHAIL---QPGRAARPGAHRAPIQ------DAGAGRGDPG-CFFSRPHN 136
P P W + + GR RP A P Q DA +G+G PG C P
Sbjct: 311 DPQPEPPNLWSSESPAGGRERGR-LRPRAAEGPTQIAWRQRDAVSGQGLPGLCSVHSPRR 369
Query: 137 EDRLKLAFISGP 148
++ + GP
Sbjct: 370 AGLVEKRLMRGP 381
Score = 27.7 bits (60), Expect = 4.0
Identities = 31/88 (35%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 68 RVAAAAYEQSPIHPQGRF------------LPAGPRPQM-GWPGHAILQPGRA-ARPG-- 111
R AA SP PQGR P GPR Q G G + + GR ARP
Sbjct: 98 RFAARLSTSSPF-PQGRAQRPQRGGVDLPATPGGPRGQCAGRSGDVLRRAGRRRARPPPV 156
Query: 112 ----AHRAPIQDAGAGRGDPGCFFSRPH 135
A RAP + G DP RPH
Sbjct: 157 PRLPAPRAPRRPRGPATPDPSPPAGRPH 184
>gi|21704287 sialidase 4 [Homo sapiens]
Length = 496
Score = 35.4 bits (80), Expect = 0.019
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 30 GQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAAAYEQSPIHPQGRFLPAG 89
G + AP D + S GP S +QP L GPG+ E++ + P+G +P G
Sbjct: 294 GFPAPAPNRPRDDSWSVGP-----GSPLQPPLLGPGVHEPP----EEAAVDPRGGQVPGG 344
Query: 90 PRPQMGWPGHAILQPGRAARPG 111
P ++ G QPG RPG
Sbjct: 345 PFSRLQPRGDGPRQPG--PRPG 364
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 35.0 bits (79), Expect = 0.025
Identities = 40/132 (30%), Positives = 45/132 (34%), Gaps = 31/132 (23%)
Query: 20 GVPSEGSFPAGQHSSAPRGE-----------GDGAPSAGPEAHFHSSRIQPLLCGPGLQR 68
G E P S PRG+ DGAP E GPG Q
Sbjct: 555 GSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPG--------GPGPQG 606
Query: 69 VAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQ--PGRAARPGAHRAPIQ-----DAG 121
E P P G P G + G PG LQ PG PG + P + DAG
Sbjct: 607 PPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAG 666
Query: 122 A-----GRGDPG 128
A G+GD G
Sbjct: 667 APGAPGGKGDAG 678
Score = 33.1 bits (74), Expect = 0.095
Identities = 36/127 (28%), Positives = 47/127 (37%), Gaps = 25/127 (19%)
Query: 7 KGFFSMGFQRRESGVPS---EGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCG 63
+GF ++ E+G P E P + P G GAP
Sbjct: 266 RGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPR-GAPGERGR-------------- 310
Query: 64 PGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGH--AILQPGRAARPGAHRAPIQDAG 121
PGL A A G+ P GP G+PG A + G A PG++ AP Q
Sbjct: 311 PGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQ--- 367
Query: 122 AGRGDPG 128
RG+PG
Sbjct: 368 --RGEPG 372
Score = 32.0 bits (71), Expect = 0.21
Identities = 38/123 (30%), Positives = 49/123 (39%), Gaps = 31/123 (25%)
Query: 20 GVPSEGSFPAGQHSS----APRGEGD--GAPSAGPEAHFHSSRIQPLLCG-PGLQRVAAA 72
G+P G P G++ P+G+ GAP +A R P L G PGL+ A
Sbjct: 642 GLPGTGG-PPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAG- 699
Query: 73 AYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAG-------RG 125
P P+G AGP PG PG A PG P + G G +G
Sbjct: 700 -----PPGPEGGKGAAGP------PG----PPGAAGTPGLQGMPGERGGLGSPGPKGDKG 744
Query: 126 DPG 128
+PG
Sbjct: 745 EPG 747
Score = 29.6 bits (65), Expect = 1.1
Identities = 32/113 (28%), Positives = 40/113 (35%), Gaps = 12/113 (10%)
Query: 15 QRRESGVPSEGSFPAGQHSSAPRGE--GDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAA 72
+R E+G+P GE +G P A E R P GP
Sbjct: 448 ERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGE------RGAPGFRGPAGPNGIPG 501
Query: 73 AYEQSPIHPQGRFLPAGPRPQMGWPGHAILQ--PGRAARPGAHRAPIQDAGAG 123
E+ P +G PAGPR G PG + PG PG+ P D G
Sbjct: 502 --EKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPG 552
Score = 28.5 bits (62), Expect = 2.3
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 64 PGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAG-A 122
PG Q V + + G P GP+ G G A +PGR PG+ P +D
Sbjct: 971 PGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAG-EPGRDGNPGSDGLPGRDGSPG 1029
Query: 123 GRGDPG 128
G+GD G
Sbjct: 1030 GKGDRG 1035
Score = 28.1 bits (61), Expect = 3.1
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 28 PAGQHSSAPRGEGDGAPSAGPEAH--FHSSRIQPLLCGPGLQRVAAAAYEQSPIHPQGRF 85
P Q +GE +AG + H F + P GP Q+ A + P P+G
Sbjct: 1085 PGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGS--PGPAGPRGPV 1142
Query: 86 LPAGPRPQMGWPGHAILQPGRAARPG 111
P+GP + G GH PG PG
Sbjct: 1143 GPSGPPGKDGTSGH----PGPIGPPG 1164
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 35.0 bits (79), Expect = 0.025
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 15 QRRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAAAY 74
++RE + PAGQH S + S S IQ P +R + +Y
Sbjct: 306 RQREKRDKPRSTSPAGQHHSPISSRHHSSSSQS------GSSIQRHSPSPRRKRTPSPSY 359
Query: 75 EQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAG 121
+++ P R A P +P H++ P R P HR+P+++ G
Sbjct: 360 QRTLTPPLRR--SASP-----YPSHSLSSPQRKQSPPRHRSPMREKG 399
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 34.7 bits (78), Expect = 0.033
Identities = 33/104 (31%), Positives = 38/104 (36%), Gaps = 21/104 (20%)
Query: 25 GSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAAAYEQSPIHPQGR 84
G P PRG A + GP+ G Q A E P G
Sbjct: 87 GLGPGPMGLMGPRGPPGAAGAPGPQ---------------GFQGPAGEPGEPGQTGPAGA 131
Query: 85 FLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAGRGDPG 128
PAGP + G GH PG+ RPG R + GA RG PG
Sbjct: 132 RGPAGPPGKAGEDGH----PGKPGRPG-ERGVVGPQGA-RGFPG 169
Score = 28.5 bits (62), Expect = 2.3
Identities = 36/122 (29%), Positives = 43/122 (35%), Gaps = 16/122 (13%)
Query: 18 ESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQR----VAAAA 73
E G P F S P GE G P E H P GP +R + AA
Sbjct: 545 EQGPPGPPGFQGLPGPSGPAGEV-GKPG---ERGLHGEFGLPGPAGPRGERGPPGESGAA 600
Query: 74 YEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAG-------RGD 126
PI +G P GP G PG + G A G P + AG +G+
Sbjct: 601 GPTGPIGSRGPSGPPGPDGNKGEPG-VVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGE 659
Query: 127 PG 128
PG
Sbjct: 660 PG 661
Score = 27.3 bits (59), Expect = 5.2
Identities = 31/115 (26%), Positives = 38/115 (33%), Gaps = 20/115 (17%)
Query: 15 QRRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAAAY 74
+R G P S P G SAGP PG
Sbjct: 221 ERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGP---------------PGFPGAPGPKG 265
Query: 75 EQSPIHPQGRFLPAGPRPQMGWPGHAILQP-GRAARPGAHRAPIQDAGAGRGDPG 128
E + G PAGPR ++G PG + P G PGA+ + A G PG
Sbjct: 266 EIGAVGNAGPAGPAGPRGEVGLPG--LSGPVGPPGNPGAN--GLTGAKGAAGLPG 316
Score = 26.6 bits (57), Expect = 8.9
Identities = 34/112 (30%), Positives = 41/112 (36%), Gaps = 9/112 (8%)
Query: 20 GVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHS--SRIQPLLCGP-GLQRVAAAAYEQ 76
G P P ++ RGE A AGP S R + GP G A AA +
Sbjct: 676 GAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQP 735
Query: 77 SPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAGRGDPG 128
+G P G +G G P AA P P AG+ RGD G
Sbjct: 736 GAKGERGAKGPKGENGVVGPTG-----PVGAAGPAGPNGPPGPAGS-RGDGG 781
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 33.9 bits (76), Expect = 0.056
Identities = 43/139 (30%), Positives = 52/139 (37%), Gaps = 27/139 (19%)
Query: 19 SGVPS--EGSFPAGQHSSAPRGEGDGAPSAG----PEAHFHSSRIQPLLCGPGLQRVAAA 72
SG PS +G+ A S A R +G APS G P AH P CGP
Sbjct: 2 SGPPSAPQGAL-AAPRSPAVRRKGLQAPSWGSPGRPAAH------SPWACGPP------- 47
Query: 73 AYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAGRGDPG--CF 130
P A P P+ W G ARP H+ +Q GAG PG C
Sbjct: 48 --HWGPQRGPRNAAAARPGPRSRWHKRCAAACGACARPPGHQ--LQPPGAGAPQPGVACS 103
Query: 131 FSRPHNEDRLKLAFISGPG 149
+ P + R + S PG
Sbjct: 104 YLGPRPQ-RTPCSAQSRPG 121
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 33.5 bits (75), Expect = 0.073
Identities = 39/125 (31%), Positives = 50/125 (40%), Gaps = 17/125 (13%)
Query: 28 PAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAAAYEQSPIHPQGRFLP 87
PAG + P +GAP A PE + R +P G G QR P P+ +P
Sbjct: 67 PAGAAGAGPAAPAEGAPGAAPEPP-PAGRARP--GGGGPQR-------PGPPSPRRPLVP 116
Query: 88 AGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAGRGDPGCFFSRPHN-EDRLKLAFIS 146
AGP P A L+P G+ AP+ A A P + P LA +
Sbjct: 117 AGPAPPA-----AKLRPPPEGSAGS-CAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARA 170
Query: 147 GPGTG 151
GPG G
Sbjct: 171 GPGPG 175
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 33.5 bits (75), Expect = 0.073
Identities = 33/126 (26%), Positives = 40/126 (31%), Gaps = 37/126 (29%)
Query: 19 SGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAAAYEQSP 78
+G+ G PAG H R D A H HS
Sbjct: 198 NGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHS------------------------ 233
Query: 79 IHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAGRGDPGCFFSRPHNED 138
HP + P P P G PGH PGAH P D D F++ +
Sbjct: 234 -HPHQQ--PPPPPPPQGPPGH----------PGAHHDPHSDEDTPTSDDLEQFAKQFKQR 280
Query: 139 RLKLAF 144
R+KL F
Sbjct: 281 RIKLGF 286
>gi|94536858 kinesin family member C3 isoform 1 [Homo sapiens]
Length = 833
Score = 33.5 bits (75), Expect = 0.073
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 54 SSRIQPLLCGPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAH 113
+ R++ + GPGL+R ++ S H + PA PQ H+ G ++RPG+
Sbjct: 762 AERVRSVELGPGLRRAELGSWS-SQEHLEWE--PACQTPQPSARAHSAPSSGTSSRPGSI 818
Query: 114 RAPIQDAGAGRGDP 127
R +Q +G R P
Sbjct: 819 RRKLQPSGKSRPLP 832
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 33.1 bits (74), Expect = 0.095
Identities = 32/107 (29%), Positives = 40/107 (37%), Gaps = 21/107 (19%)
Query: 36 PRGEGDGAPSAGPEAH-------FHSSRIQPLLCGPGLQRV----------AAAAYEQSP 78
PRG G GA GP H ++ + L G + V A A +
Sbjct: 9 PRGPGGGAGGTGPLMHPDAAAAAAAAAAAERLHAGAAYREVQKLMHHEWLGAGAGHPVGL 68
Query: 79 IHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAGRG 125
HPQ +LP G W G L+ G+A G RA D G G G
Sbjct: 69 AHPQ--WLPTGGGGGGDWAGGPHLEHGKAGGGGTGRA--DDGGGGGG 111
>gi|6912492 mitogen-activated protein kinase 8 interacting protein 2
isoform 1 [Homo sapiens]
Length = 824
Score = 32.3 bits (72), Expect = 0.16
Identities = 36/107 (33%), Positives = 41/107 (38%), Gaps = 24/107 (22%)
Query: 23 SEGSFPA---GQH-SSAPRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAAAYEQSP 78
SEGS P GQ S APR G+ AG A S+ GPG + +P
Sbjct: 360 SEGSSPIRCPGQCLSPAPRPPGEPVSPAGGAAQ--DSQDPEAAAGPGGVELVDMETLCAP 417
Query: 79 IHPQGRFLPAGPRPQMGWPGHAIL--------------QPGRAARPG 111
P PA PRP PG + PGRAARPG
Sbjct: 418 PPPA----PAAPRPGPAQPGPCLFLSNPTRDTITPLWAAPGRAARPG 460
>gi|7706537 mitogen-activated protein kinase 8 interacting protein 2
isoform 2 [Homo sapiens]
Length = 797
Score = 32.3 bits (72), Expect = 0.16
Identities = 36/107 (33%), Positives = 41/107 (38%), Gaps = 24/107 (22%)
Query: 23 SEGSFPA---GQH-SSAPRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAAAYEQSP 78
SEGS P GQ S APR G+ AG A S+ GPG + +P
Sbjct: 333 SEGSSPIRCPGQCLSPAPRPPGEPVSPAGGAAQ--DSQDPEAAAGPGGVELVDMETLCAP 390
Query: 79 IHPQGRFLPAGPRPQMGWPGHAIL--------------QPGRAARPG 111
P PA PRP PG + PGRAARPG
Sbjct: 391 PPPA----PAAPRPGPAQPGPCLFLSNPTRDTITPLWAAPGRAARPG 433
>gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 31.6 bits (70), Expect = 0.28
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 63 GPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGA 122
GPG+ R A PQ AGP P +G P ++ P R A + QD G
Sbjct: 248 GPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQRRALLEPQHSTHQDRGL 307
Query: 123 GRGDPGCFFSRPH 135
P +PH
Sbjct: 308 ---HPHLLAEQPH 317
>gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 31.6 bits (70), Expect = 0.28
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 63 GPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGA 122
GPG+ R A PQ AGP P +G P ++ P R A + QD G
Sbjct: 248 GPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQRRALLEPQHSTHQDRGL 307
Query: 123 GRGDPGCFFSRPH 135
P +PH
Sbjct: 308 ---HPHLLAEQPH 317
>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
sapiens]
Length = 470
Score = 31.6 bits (70), Expect = 0.28
Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 101 ILQPGRAARPG------AHRAPIQDAGAGRGDPGCFF-SRPHNED 138
+L PG A PG AH AG G GDPG RP NED
Sbjct: 199 MLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENED 243
>gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 31.6 bits (70), Expect = 0.28
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 63 GPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGA 122
GPG+ R A PQ AGP P +G P ++ P R A + QD G
Sbjct: 248 GPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQRRALLEPQHSTHQDRGL 307
Query: 123 GRGDPGCFFSRPH 135
P +PH
Sbjct: 308 ---HPHLLAEQPH 317
>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
sapiens]
Length = 470
Score = 31.6 bits (70), Expect = 0.28
Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 101 ILQPGRAARPG------AHRAPIQDAGAGRGDPGCFF-SRPHNED 138
+L PG A PG AH AG G GDPG RP NED
Sbjct: 199 MLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENED 243
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 31.6 bits (70), Expect = 0.28
Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 15 QRRESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCGPGLQRVAAAAY 74
+R +G P P S P+G G+P GP+ +Q L GL V
Sbjct: 645 ERGAAGEPGPHGPPGVPGSVGPKGSS-GSP--GPQGPPGPVGLQGLRGEVGLPGVKGDKG 701
Query: 75 EQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRA 115
P P+G GPR G PG L PG PGA A
Sbjct: 702 PMGPPGPKGDQGEKGPRGLTGEPGMRGL-PGAVGEPGAKGA 741
Score = 30.4 bits (67), Expect = 0.62
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 76 QSPIHPQGRFLPAGPRPQMGWPGHAIL-QPGRAARPGAHRAPIQDAGAG----RGDPG 128
+ P+ +GR P GPR + G PG + G A PG H P G G PG
Sbjct: 617 EGPMGQRGREGPMGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPG 674
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 31.2 bits (69), Expect = 0.36
Identities = 35/118 (29%), Positives = 43/118 (36%), Gaps = 8/118 (6%)
Query: 15 QRRESGVPSEGSFPAGQHSSAPRGEGD--GAPSAGPEAHFHSSRIQPLLCGPG-LQRVAA 71
+R G FP + P G+ G P E F P GPG +
Sbjct: 929 ERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPP---GPGGVVGPQG 985
Query: 72 AAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAG-RGDPG 128
E PI +G P GP + G PG A + G PG +D AG RG PG
Sbjct: 986 PTGETGPIGERGHPGPPGPPGEQGLPG-AAGKEGAKGDPGPQGISGKDGPAGLRGFPG 1042
Score = 28.5 bits (62), Expect = 2.3
Identities = 41/141 (29%), Positives = 47/141 (33%), Gaps = 25/141 (17%)
Query: 18 ESGVPSEGSFPAGQHSSAPRGEGDGAPS----------AGPEAHFHSSRIQPLLCGP-GL 66
+ G P E PAGQ DG P AGP R P G G
Sbjct: 1328 DPGPPGEPG-PAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP-PGKRGPPGAAGAEGR 1385
Query: 67 QRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQ--PGRAARPGAHRAPIQDAGAG- 123
Q A E P G+ P GP+ G PG L+ PG G A QD G
Sbjct: 1386 QGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGP 1445
Query: 124 ---------RGDPGCFFSRPH 135
+GDPG + H
Sbjct: 1446 MGPPGLPGLKGDPGSKGEKGH 1466
Score = 27.3 bits (59), Expect = 5.2
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 81 PQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGAGR-------GDPG 128
P G GP+ + G G A PG A PGA P D G GDPG
Sbjct: 1277 PPGEAGVGGPKGERGEKGEAG-PPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPG 1330
Score = 26.9 bits (58), Expect = 6.8
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 17/67 (25%)
Query: 63 GPGLQRVAAAAYEQSPIHPQGRFLPAGPRPQMGWPGHAILQPGRAARPGAHRAPIQDAGA 122
GPG + + P P+G P GP +PG+ RPGA D G
Sbjct: 557 GPGSSGAKGESGDPGPQGPRGVQGPPGPTG----------KPGKRGRPGA------DGGR 600
Query: 123 GR-GDPG 128
G G+PG
Sbjct: 601 GMPGEPG 607
Score = 26.6 bits (57), Expect = 8.9
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 18 ESGVPSEGSFPAGQHSSAPRGEGDGAPSAGPEAHFHSSRIQPLLCG-PGLQRVAAAAYEQ 76
E G P + P Q P+G GP+ +P L G PG ++
Sbjct: 698 EPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQG-------KPGLAGLPGADGPPGHPGKE 750
Query: 77 SPIHPQGRFLPAGPRPQMGWPG 98
+G P GP+ +G+PG
Sbjct: 751 GQSGEKGALGPPGPQGPIGYPG 772
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.140 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,812,116
Number of Sequences: 37866
Number of extensions: 578857
Number of successful extensions: 2511
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 237
Number of HSP's that attempted gapping in prelim test: 2229
Number of HSP's gapped (non-prelim): 515
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.