Guide to the Human Genome
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Name: LOC728288 Sequence: fasta or formatted (153aa) NCBI GI: 169208800
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {153aa} PREDICTED: hypothetical protein
alt mRNA {153aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         18           4
 C cysteine            2.0          3           1
 D aspartate           2.6          4           1
 E glutamate           3.9          6           1
 F phenylalanine       6.5         10           2
 G glycine            15.7         24           1
 H histidine           5.2          8           1
 I isoleucine          3.9          6           1
 K lysine              1.3          2           1
 L leucine             4.6          7           2
 M methionine          2.0          3           1
 N asparagine          1.3          2           1
 P proline            12.4         19           1
 Q glutamine           5.9          9           1
 R arginine            9.8         15           2
 S serine              7.8         12           2
 T threonine           0.7          1           1
 V valine              1.3          2           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728288             1.000   PREDICTED: hypothetical protein 
LOC728288             1.000   PREDICTED: hypothetical protein 
COL11A2               0.043   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.043   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.043   collagen, type XI, alpha 2 isoform 1 preproprotein ...
PLEKHA6               0.043   phosphoinositol 3-phosphate-binding protein-3 
RANBP9                0.040   RAN binding protein 9 
COL1A1                0.036   alpha 1 type I collagen preproprotein 
COL2A1                0.036   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.036   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC283999             0.033   hypothetical protein LOC283999 
NEU4                  0.033   sialidase 4 
COL3A1                0.033   collagen type III alpha 1 preproprotein 
ZC3H13                0.033   zinc finger CCCH-type containing 13 
COL1A2                0.033   alpha 2 type I collagen 
C17orf65              0.030   hypothetical protein LOC339201 
TAF4                  0.026   TBP-associated factor 4 
POU3F2                0.026   POU domain, class 3, transcription factor 2 
KIFC3                 0.026   kinesin family member C3 isoform 1 
POU3F1                0.026   POU domain, class 3, transcription factor 1 
MAPK8IP2              0.023   mitogen-activated protein kinase 8 interacting protei...
MAPK8IP2              0.023   mitogen-activated protein kinase 8 interacting protei...
LOC100133224          0.023   PREDICTED: similar to hCG2041320 
LOC100133224          0.023   PREDICTED: similar to hCG2041320 
LOC100290359          0.023   PREDICTED: hypothetical protein XP_002346414 
LOC100133224          0.023   PREDICTED: similar to hCG2041320 
LOC100287202          0.023   PREDICTED: hypothetical protein XP_002342114 
COL17A1               0.023   alpha 1 type XVII collagen 
COL11A1               0.020   alpha 1 type XI collagen isoform B preproprotein [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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