Guide to the Human Genome
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Name: LOC642515 Sequence: fasta or formatted (288aa) NCBI GI: 113421234
Description:

PREDICTED: similar to NG5 protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {288aa} PREDICTED: similar to NG5 protein
alt prot {93aa} PREDICTED: similar to NG5 protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         39           3
 C cysteine            1.0          3           2
 D aspartate           2.8          8           1
 E glutamate           4.5         13           2
 F phenylalanine       3.8         11           1
 G glycine             9.0         26           3
 H histidine           1.4          4           1
 I isoleucine          1.7          5           1
 K lysine              2.8          8           1
 L leucine             9.7         28           2
 M methionine          2.4          7           2
 N asparagine          0.3          1           1
 P proline            19.8         57           3
 Q glutamine           3.1          9           1
 R arginine            4.5         13           2
 S serine              5.9         17           1
 T threonine           3.8         11           1
 V valine              6.2         18           3
 W tryptophan          0.7          2           1
 Y tyrosine            2.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to NG5 protein 
LOC642515             1.000   PREDICTED: similar to NG5 protein 
LOC642515             0.277   PREDICTED: similar to NG5 protein 
PRRT1                 0.111   NG5 protein 
FLJ22184              0.089   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.085   PREDICTED: hypothetical protein LOC80164 
NACA                  0.084   nascent polypeptide-associated complex alpha subuni...
CPSF6                 0.080   cleavage and polyadenylation specific factor 6, 68 ...
MAPK1IP1L             0.078   MAPK-interacting and spindle-stabilizing protein [Ho...
SETD1B                0.073   SET domain containing 1B 
COL4A5                0.070   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.070   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.070   type IV collagen alpha 5 isoform 3 precursor 
SF3A2                 0.068   splicing factor 3a, subunit 2 
FLJ22184              0.068   PREDICTED: hypothetical protein FLJ22184 
TAF4                  0.068   TBP-associated factor 4 
COL18A1               0.064   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.064   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.064   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
COL5A1                0.063   alpha 1 type V collagen preproprotein 
RAPH1                 0.063   Ras association and pleckstrin homology domains 1 is...
MEX3D                 0.061   ring finger and KH domain containing 1 
COL9A3                0.061   alpha 3 type IX collagen 
VPS37C                0.061   vacuolar protein sorting 37C 
CASKIN1               0.059   CASK interacting protein 1 
COL9A1                0.057   alpha 1 type IX collagen isoform 1 precursor 
WIPF2                 0.057   WIRE protein 
WIPF3                 0.057   WAS/WASL interacting protein family, member 3 [Homo...
COL8A1                0.056   alpha 1 type VIII collagen precursor 
COL8A1                0.056   alpha 1 type VIII collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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