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Search of human proteins with 113421234
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens]
(288 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens] 599 e-172
gi|113420954 PREDICTED: similar to NG5 protein [Homo sapiens] 599 e-172
gi|169178462 PREDICTED: similar to NG5 protein [Homo sapiens] 184 6e-47
gi|77681565 NG5 protein [Homo sapiens] 89 4e-18
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 76 4e-14
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 74 1e-13
gi|163965366 nascent polypeptide-associated complex alpha subuni... 73 3e-13
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 71 1e-12
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 70 3e-12
gi|210032580 SET domain containing 1B [Homo sapiens] 67 2e-11
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 65 7e-11
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 65 7e-11
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 65 7e-11
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 64 1e-10
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 64 2e-10
gi|110832843 TBP-associated factor 4 [Homo sapiens] 64 2e-10
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 62 8e-10
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 62 8e-10
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 62 8e-10
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 61 1e-09
gi|47132519 Ras association and pleckstrin homology domains 1 is... 61 1e-09
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 60 2e-09
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 60 2e-09
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 60 2e-09
gi|18079216 CASK interacting protein 1 [Homo sapiens] 59 6e-09
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 58 8e-09
gi|18959210 WIRE protein [Homo sapiens] 58 8e-09
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 58 1e-08
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 57 2e-08
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 57 2e-08
>gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens]
Length = 288
Score = 599 bits (1545), Expect = e-172
Identities = 288/288 (100%), Positives = 288/288 (100%)
Query: 1 MGRTSPICKQLREMLERWPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKG 60
MGRTSPICKQLREMLERWPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKG
Sbjct: 1 MGRTSPICKQLREMLERWPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKG 60
Query: 61 GGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGA 120
GGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGA
Sbjct: 61 GGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGA 120
Query: 121 PHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFS 180
PHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFS
Sbjct: 121 PHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFS 180
Query: 181 PPAGAAFPFPVYNGPMAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEA 240
PPAGAAFPFPVYNGPMAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEA
Sbjct: 181 PPAGAAFPFPVYNGPMAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEA 240
Query: 241 RAALGRGDLAQAEEASRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP 288
RAALGRGDLAQAEEASRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP
Sbjct: 241 RAALGRGDLAQAEEASRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP 288
>gi|113420954 PREDICTED: similar to NG5 protein [Homo sapiens]
Length = 288
Score = 599 bits (1545), Expect = e-172
Identities = 288/288 (100%), Positives = 288/288 (100%)
Query: 1 MGRTSPICKQLREMLERWPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKG 60
MGRTSPICKQLREMLERWPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKG
Sbjct: 1 MGRTSPICKQLREMLERWPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKG 60
Query: 61 GGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGA 120
GGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGA
Sbjct: 61 GGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGA 120
Query: 121 PHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFS 180
PHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFS
Sbjct: 121 PHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFS 180
Query: 181 PPAGAAFPFPVYNGPMAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEA 240
PPAGAAFPFPVYNGPMAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEA
Sbjct: 181 PPAGAAFPFPVYNGPMAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEA 240
Query: 241 RAALGRGDLAQAEEASRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP 288
RAALGRGDLAQAEEASRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP
Sbjct: 241 RAALGRGDLAQAEEASRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP 288
>gi|169178462 PREDICTED: similar to NG5 protein [Homo sapiens]
Length = 93
Score = 184 bits (468), Expect = 6e-47
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 196 MAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEA 255
MAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEA
Sbjct: 1 MAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEA 60
Query: 256 SRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP 288
SRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP
Sbjct: 61 SRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP 93
>gi|77681565 NG5 protein [Homo sapiens]
Length = 306
Score = 89.0 bits (219), Expect = 4e-18
Identities = 91/288 (31%), Positives = 110/288 (38%), Gaps = 37/288 (12%)
Query: 19 PLPAAPPSRTPPQTLK----------HLPSGEPGPPFPAGMPGGGSGSDTKGGGSPAT-P 67
P P A P PPQ H P AG + + +G S AT P
Sbjct: 23 PQPPAEPPAPPPQAAPSSHHHHHHHYHQSGTATLPRLGAGGLASSAATAQRGPSSSATLP 82
Query: 68 EDPR-SPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFV 126
P +P PAA P P LP++P P L E G P AAA
Sbjct: 83 RPPHHAPPGPAAGAPP--PGCATLPRMPPDPY-LQETRFEGPLPPPPPAAAA-------- 131
Query: 127 GEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPP-PAQLYPAAPTPPALFSPPAGA 185
PPP AP AP P V P + P P QL P P P G
Sbjct: 132 --PPPPAPAQTAQAPGFVVPTHAGTVGTLPLGGYVAPGYPLQLQPCTAYVPVY---PVGT 186
Query: 186 AFPFPVYNG--------PMAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYS 237
+ G P PG A +E R P DYM +VL T+ C TG+IAI +
Sbjct: 187 PYAGGTPGGTGVTSTLPPPPQGPGLALLEPRRPPHDYMPIAVLTTICCFWPTGIIAIFKA 246
Query: 238 HEARAALGRGDLAQAEEASRKARSLVLFSLLFGVFVSTSWVIYVVVAL 285
+ R AL RGD+ AE ASR+AR+ SL G+ I VV +
Sbjct: 247 VQVRTALARGDMVSAEIASREARNFSFISLAVGIAAMVLCTILTVVII 294
Score = 34.7 bits (78), Expect = 0.100
Identities = 34/109 (31%), Positives = 41/109 (37%), Gaps = 28/109 (25%)
Query: 129 PPPYAPPDPKAAPLLYPPFPQVPVVLQPAPS--------------ALFPPPAQLYPAAPT 174
PPPY P P A P PP Q APS A P A+
Sbjct: 17 PPPYNAPQPPAEPPAPPP--------QAAPSSHHHHHHHYHQSGTATLPRLGAGGLASSA 68
Query: 175 PPALFSPPAGAAFPFPVYN---GPMAGVPGP--ATVEHRPLPKDYMMES 218
A P + A P P ++ GP AG P P AT+ P P Y+ E+
Sbjct: 69 ATAQRGPSSSATLPRPPHHAPPGPAAGAPPPGCATLPRMP-PDPYLQET 116
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 75.9 bits (185), Expect = 4e-14
Identities = 65/215 (30%), Positives = 80/215 (37%), Gaps = 33/215 (15%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAA 78
PLP APPS + P +L+ LPS PP A G P+ P P + P A
Sbjct: 337 PLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQA 396
Query: 79 P---------EDPQMPAQPALPQL----PRRPRTL-----------------DEDGAAGE 108
P P PA P L L P+ P L +
Sbjct: 397 PPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPA 456
Query: 109 AGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYP---PFPQVPVVLQPAPSALFPPP 165
+ PVS +A + + PP PP P A+P + P P PQ P L P L PP
Sbjct: 457 SPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPP 516
Query: 166 AQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVP 200
Q PA TPP P A+FP P A +P
Sbjct: 517 PQAPPALATPPLQALPSPPASFPGQAPFSPSASLP 551
Score = 58.5 bits (140), Expect = 6e-09
Identities = 69/230 (30%), Positives = 86/230 (37%), Gaps = 53/230 (23%)
Query: 19 PLPAAPPS-RTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPA 77
P P APP+ TPP L+ LPS P FP P S S + P+ P A P
Sbjct: 515 PPPQAPPALATPP--LQALPS--PPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPL 570
Query: 78 APEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGP-VSKAAAGGAPHIGFVGEPPPYAPPD 136
P PA P L Q PRRP T D + +GP ++ A A G P PP +P
Sbjct: 571 LQVPPSPPASPTL-QAPRRPPTPGPDTSV--SGPRLTLALAPGPP------PPPSRSPSS 621
Query: 137 PKAAPLL----------------YPPFPQVPVVLQPAPSALFPPPAQLYPAA----PTPP 176
+ P L Y P+ P P A A +PAA P PP
Sbjct: 622 TLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAEL---AACHPAAWSRGPAPP 678
Query: 177 ALFSPPAGAAFPFP-------------VY--NGPMAGVPGPATVEHRPLP 211
F GA P+P +Y GP + P P ++ P P
Sbjct: 679 LAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSP 728
Score = 57.0 bits (136), Expect = 2e-08
Identities = 64/227 (28%), Positives = 85/227 (37%), Gaps = 47/227 (20%)
Query: 19 PLPAA---PPSRTPPQTLKHLPSGEPGPPFPAGM--PGGGSGSD---TKGGGSPATPEDP 70
P P+A PP+ P +++ P PA P G G ++ S ATP
Sbjct: 192 PAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSS 251
Query: 71 RSPAKPAAPEDPQMPAQPALP-----QLPRRPR-TLDEDGAAGEAGPVSKA-AAGGAPHI 123
+ + P+A P+ PA P+ P Q R P+ T AA GP+S + A +P
Sbjct: 252 PARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSA 311
Query: 124 GFVGEPPPYAPPDPKAAPL---------LYPPFPQVPVVLQPAPSALFPPPAQ------- 167
+ PP P P ++ L L PP P P LQ PS PP+Q
Sbjct: 312 ALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGS 371
Query: 168 --------------LYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVP 200
L P A PP +PPA A P P A P
Sbjct: 372 PTLQATHSFLPSPPLSPLATPPPQ--APPALALPPLQAPPSPPASPP 416
Score = 47.8 bits (112), Expect = 1e-05
Identities = 58/209 (27%), Positives = 72/209 (34%), Gaps = 38/209 (18%)
Query: 21 PAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPA-KPAAP 79
P +PP +PP P P P P+ P + P P SP P+A
Sbjct: 439 PFSPPP-SPPVQAPFSPPASP-PVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSAT 496
Query: 80 EDPQMPAQPALPQL------PRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPP--- 130
PQ P A P L P+ P L A P +A +P F G+ P
Sbjct: 497 PPPQAPPPLAAPPLQLAKPPPQAPPAL--------ATPPLQALP--SPPASFPGQAPFSP 546
Query: 131 -------PYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPP- 182
P A P P+A P+L P QVP P+P A A P P P S P
Sbjct: 547 SASLPMSPLATPPPQAPPVLAAPLLQVP----PSPPASPTLQAPRRPPTPGPDTSVSGPR 602
Query: 183 ----AGAAFPFPVYNGPMAGVPGPATVEH 207
P P P + + GP H
Sbjct: 603 LTLALAPGPPPPPSRSPSSTLSGPDLAGH 631
Score = 36.2 bits (82), Expect = 0.034
Identities = 53/189 (28%), Positives = 66/189 (34%), Gaps = 19/189 (10%)
Query: 5 SPICKQLREMLERWPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGG-SGSDTKGGGS 63
SP + R P P S + P+ L G P P P+ P SG D G S
Sbjct: 576 SPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPP--PSRSPSSTLSGPDLAGHSS 633
Query: 64 PATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHI 123
AT + PE + P +L AA GP A GAP
Sbjct: 634 SATSTPEELRGYDSGPEGGAAASPPPDAELAAC------HPAAWSRGPAPPLAFRGAP-- 685
Query: 124 GFVGEPPPYAP-PDPKAAPLLYPPF-PQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSP 181
G P P+ P P +A L + + P PAP AL P P+ P A
Sbjct: 686 ---GAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPS---PGTSGGKAAAGA 739
Query: 182 PAGAAFPFP 190
AGA+ P
Sbjct: 740 GAGASSRSP 748
Score = 30.4 bits (67), Expect = 1.9
Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Query: 18 WPLPAAPPSRTPPQTLKHLPSGE-----PGPPFPAGMPGGGSGSDTKGGGSPATPEDPRS 72
WP P S T+ E PG P PG G G G+ A+ RS
Sbjct: 691 WPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGAS---SRS 747
Query: 73 PAKPAAPEDPQMPAQPALPQ--LPRRPRTLDEDGAAGEAGPVSKAAAGG 119
P + E P Q ++ Q L R +GAAG +G A GG
Sbjct: 748 PKQARLGELPLGALQASVVQHLLSRTLLLAAAEGAAGGSGGGPGGAEGG 796
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 74.3 bits (181), Expect = 1e-13
Identities = 64/215 (29%), Positives = 80/215 (37%), Gaps = 33/215 (15%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAA 78
P P+APPS + P +L+ LPS PP A G P+ P P + P A
Sbjct: 298 PSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQA 357
Query: 79 P---------EDPQMPAQPALPQL----PRRPRTL-----------------DEDGAAGE 108
P P PA P L L P+ P L +
Sbjct: 358 PPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPA 417
Query: 109 AGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYP---PFPQVPVVLQPAPSALFPPP 165
+ PVS +A + + PP PP P A+P + P P PQ P L P L PP
Sbjct: 418 SPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPP 477
Query: 166 AQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVP 200
Q PA TPP P A+FP P A +P
Sbjct: 478 PQAPPALATPPLQALPSPPASFPGQAPFSPSASLP 512
Score = 58.5 bits (140), Expect = 6e-09
Identities = 69/230 (30%), Positives = 86/230 (37%), Gaps = 53/230 (23%)
Query: 19 PLPAAPPS-RTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPA 77
P P APP+ TPP L+ LPS P FP P S S + P+ P A P
Sbjct: 476 PPPQAPPALATPP--LQALPS--PPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPL 531
Query: 78 APEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGP-VSKAAAGGAPHIGFVGEPPPYAPPD 136
P PA P L Q PRRP T D + +GP ++ A A G P PP +P
Sbjct: 532 LQVPPSPPASPTL-QAPRRPPTPGPDTSV--SGPRLTLALAPGPP------PPPSRSPSS 582
Query: 137 PKAAPLL----------------YPPFPQVPVVLQPAPSALFPPPAQLYPAA----PTPP 176
+ P L Y P+ P P A A +PAA P PP
Sbjct: 583 TLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAEL---AACHPAAWSRGPAPP 639
Query: 177 ALFSPPAGAAFPFP-------------VY--NGPMAGVPGPATVEHRPLP 211
F GA P+P +Y GP + P P ++ P P
Sbjct: 640 LAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSP 689
Score = 54.3 bits (129), Expect = 1e-07
Identities = 62/213 (29%), Positives = 83/213 (38%), Gaps = 38/213 (17%)
Query: 19 PLPAA---PPSRTPPQTLKHLPSGEPGPPFPAGM--PGGGSGSD---TKGGGSPATPEDP 70
P P+A PP+ P +++ P PA P G G ++ S ATP
Sbjct: 183 PAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSS 242
Query: 71 RSPAKPAAPEDPQMPAQPALP-----QLPRRPR-TLDEDGAAGEAGPVSKAAAGGAPHIG 124
+ + P+A P+ PA P+ P Q R P+ T AA GP+S +
Sbjct: 243 PARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSP-------- 294
Query: 125 FVGEPPPYAPPDPKAAPLL--YPPFPQVP----------VVLQPAPSALFPPPAQ--LYP 170
+ P P APP P A P L P P P LQ S L PP P
Sbjct: 295 -LATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATP 353
Query: 171 AAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPA 203
PPAL PP A P P + P++ + P+
Sbjct: 354 PPQAPPALALPPLQAP-PSPPASPPLSPLATPS 385
Score = 48.5 bits (114), Expect = 7e-06
Identities = 55/190 (28%), Positives = 68/190 (35%), Gaps = 42/190 (22%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAA 78
P A PS+ P+ L+ L + PP P G S SP P +P P+A
Sbjct: 254 PRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSS-----SPLATPSPSAPPSPSA 308
Query: 79 PEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAG-GAPHIGFVGEPPPYAPPDP 137
P P+L LP P T P S+A G+P + P P P
Sbjct: 309 P--------PSLQTLPSPPAT-----------PPSQATTSLGSPTLQATHSFLPSPPLSP 349
Query: 138 KAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALF-----SPPAGAAFPFPVY 192
A P PP AP AL PP Q P+ P P L SP A A +
Sbjct: 350 LATP---PP---------QAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLL 397
Query: 193 NGPMAGVPGP 202
P + P P
Sbjct: 398 QAPFSPPPSP 407
Score = 47.8 bits (112), Expect = 1e-05
Identities = 58/209 (27%), Positives = 72/209 (34%), Gaps = 38/209 (18%)
Query: 21 PAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPA-KPAAP 79
P +PP +PP P P P P+ P + P P SP P+A
Sbjct: 400 PFSPPP-SPPVQAPFSPPASP-PVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSAT 457
Query: 80 EDPQMPAQPALPQL------PRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPP--- 130
PQ P A P L P+ P L A P +A +P F G+ P
Sbjct: 458 PPPQAPPPLAAPPLQLAKPPPQAPPAL--------ATPPLQALP--SPPASFPGQAPFSP 507
Query: 131 -------PYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPP- 182
P A P P+A P+L P QVP P+P A A P P P S P
Sbjct: 508 SASLPMSPLATPPPQAPPVLAAPLLQVP----PSPPASPTLQAPRRPPTPGPDTSVSGPR 563
Query: 183 ----AGAAFPFPVYNGPMAGVPGPATVEH 207
P P P + + GP H
Sbjct: 564 LTLALAPGPPPPPSRSPSSTLSGPDLAGH 592
Score = 36.2 bits (82), Expect = 0.034
Identities = 53/189 (28%), Positives = 66/189 (34%), Gaps = 19/189 (10%)
Query: 5 SPICKQLREMLERWPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGG-SGSDTKGGGS 63
SP + R P P S + P+ L G P P P+ P SG D G S
Sbjct: 537 SPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPP--PSRSPSSTLSGPDLAGHSS 594
Query: 64 PATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHI 123
AT + PE + P +L AA GP A GAP
Sbjct: 595 SATSTPEELRGYDSGPEGGAAASPPPDAELAAC------HPAAWSRGPAPPLAFRGAP-- 646
Query: 124 GFVGEPPPYAP-PDPKAAPLLYPPF-PQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSP 181
G P P+ P P +A L + + P PAP AL P P+ P A
Sbjct: 647 ---GAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPS---PGTSGGKAAAGA 700
Query: 182 PAGAAFPFP 190
AGA+ P
Sbjct: 701 GAGASSRSP 709
Score = 30.4 bits (67), Expect = 1.9
Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Query: 18 WPLPAAPPSRTPPQTLKHLPSGE-----PGPPFPAGMPGGGSGSDTKGGGSPATPEDPRS 72
WP P S T+ E PG P PG G G G+ A+ RS
Sbjct: 652 WPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGAS---SRS 708
Query: 73 PAKPAAPEDPQMPAQPALPQ--LPRRPRTLDEDGAAGEAGPVSKAAAGG 119
P + E P Q ++ Q L R +GAAG +G A GG
Sbjct: 709 PKQARLGELPLGALQASVVQHLLSRTLLLAAAEGAAGGSGGGPGGAEGG 757
Score = 28.9 bits (63), Expect = 5.5
Identities = 65/255 (25%), Positives = 82/255 (32%), Gaps = 66/255 (25%)
Query: 22 AAPPSRTPPQTLKHLPSGEPGPPFP-----------AGMPGGGSGSDTKGG-GSPATPED 69
A P+ P L P G P PP P AG G ++ GG G PE
Sbjct: 14 ARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPES 73
Query: 70 -PRS---------------PAKPAAPEDPQMPAQPALPQLPRRPRTLDEDG--------- 104
PR+ A PA P + P RP L + G
Sbjct: 74 APRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETV 133
Query: 105 AAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPP 164
A G+A K +A A P P P P A +V + +PAPSA P
Sbjct: 134 ARGKATEAPKRSALSAGARRDTSGPTP-GTPSPAMARRSRAAGTEVGLP-RPAPSARPRP 191
Query: 165 P-----------AQLYPAAPTPPALFSPPAG-------------AAFPF--PVYNGPMA- 197
P ++ P+P A P AG +A P P +GP A
Sbjct: 192 PTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSAR 251
Query: 198 GVPGPATVEHRPLPK 212
G P +P PK
Sbjct: 252 GTPRAPAHPSQPKPK 266
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 72.8 bits (177), Expect = 3e-13
Identities = 62/196 (31%), Positives = 72/196 (36%), Gaps = 21/196 (10%)
Query: 24 PPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQ 83
PP+ TPP P G P P P G P + + GSPA P+ + P A P
Sbjct: 988 PPAATPPS-----PKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPS 1042
Query: 84 MPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLL 143
PA LP+ T G + + GAP PP PP PK P
Sbjct: 1043 PKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAP------TPPAATPPSPKGGPAT 1096
Query: 144 YPP--FPQVPVVLQPAP-SALFPPPAQLYPAAP--TPPALFSPPAGAAFPFP--VYNGPM 196
P P P P+P L PP + P P TPP SP G A P P P
Sbjct: 1097 PSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPP---SPKGGLATPPPKGAPTTPA 1153
Query: 197 AGVPGPATVEHRPLPK 212
A P P P PK
Sbjct: 1154 ATPPSPKGGLATPPPK 1169
Score = 71.6 bits (174), Expect = 7e-13
Identities = 67/227 (29%), Positives = 80/227 (35%), Gaps = 27/227 (11%)
Query: 1 MGRTSPICKQLREMLERWPLPAAPPSR---TPPQTLKHLPSGEPGPPFPAGMPGGGSGSD 57
+ TS K+ R +PA+P + TPP P G P P P P + +
Sbjct: 911 LSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATP 970
Query: 58 TKGGGSPATPEDPRSPAKPAA--PEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKA 115
G PATP +P PAA P PA P+ P P P K
Sbjct: 971 PSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAV---------TPPSPKG 1021
Query: 116 AAGGAPHIGFVGEPPPYAPPDPKAAPLLYP---PFPQVPVVLQPAPSALFPPPAQLYPAA 172
+ P PP PP PK +P P P P P+P P A
Sbjct: 1022 SPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKG--GPATPSLKGA 1079
Query: 173 PTPPALF--SPPAGAAFPFP--VYNGPMAGVPGP----ATVEHRPLP 211
PTPPA SP G A P P P A P P AT H+ P
Sbjct: 1080 PTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAP 1126
Score = 69.7 bits (169), Expect = 3e-12
Identities = 66/211 (31%), Positives = 78/211 (36%), Gaps = 34/211 (16%)
Query: 24 PPSRTPPQTLKHLPSGEPGPPFPAGMPGGG----SGSDTKGGGSPATPEDPRSPAKPAAP 79
PP TP ++ +LP + GP PA S S K +PA P SP+ AP
Sbjct: 881 PPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAP 940
Query: 80 EDPQM--------PAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPP 131
P PA P+ P P G A P K GAP PP
Sbjct: 941 TPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPK----GAP------TPPA 990
Query: 132 YAPPDPKAAPLLYPP--FPQVPVVLQPAP-----SALFPPPAQLYPAAPTPPALFSPPAG 184
PP PK P P P P V P+P + FP A PAA TPP+ PA
Sbjct: 991 ATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAA-TPPSPKGSPAA 1049
Query: 185 AAFPFPVYNGPMAGVP----GPATVEHRPLP 211
P P A +P GPAT + P
Sbjct: 1050 TPLPKGAPTTPAATLPSPKGGPATPSLKGAP 1080
Score = 64.7 bits (156), Expect = 9e-11
Identities = 59/193 (30%), Positives = 68/193 (35%), Gaps = 25/193 (12%)
Query: 25 PSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAA--PEDP 82
P+ TPP P G P P G P + + G ATP +P PAA P
Sbjct: 1198 PAATPPS-----PKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPK 1252
Query: 83 QMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPL 142
PA P P P G A P K GAP+ P PP PK P
Sbjct: 1253 GGPATPPPKGAPTPPAATPPSLKGGLATPPHK----GAPN------PAVVTPPSPKGGPA 1302
Query: 143 LYPP--FPQVPVVLQPAP--SALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAG 198
PP P P P+P S PPP APTPPA+ P P G
Sbjct: 1303 TSPPKGAPTPPAATPPSPKGSPGTPPP----KGAPTPPAVTPPSPKGTPTLPATTPSSKG 1358
Query: 199 VPGPATVEHRPLP 211
P + + P P
Sbjct: 1359 GPTTPSSKEGPTP 1371
Score = 61.2 bits (147), Expect = 1e-09
Identities = 66/196 (33%), Positives = 71/196 (36%), Gaps = 23/196 (11%)
Query: 24 PPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAA-PEDP 82
PP+ TPP P G P P P G P + + G ATP +P PAA P P
Sbjct: 1082 PPAATPPS-----PKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSP 1136
Query: 83 QMP-AQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPP---YAPPDPK 138
+ A P P P G A P K GAP P P A P PK
Sbjct: 1137 KGGLATPPPKGAPTTPAATPPSPKGGLATPPPK----GAPTTPAATPPSPKGGLATPSPK 1192
Query: 139 AAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFP--VYNGPM 196
AP P P PS P A PAA TPP SP G A P P P
Sbjct: 1193 GAPTTPAATPPSPKGGLATPS---PKGAPTTPAA-TPP---SPKGGLATPSPKGAPTTPA 1245
Query: 197 AGVPGPATVEHRPLPK 212
A P P P PK
Sbjct: 1246 ATPPSPKGGPATPPPK 1261
Score = 60.8 bits (146), Expect = 1e-09
Identities = 61/204 (29%), Positives = 74/204 (36%), Gaps = 27/204 (13%)
Query: 19 PLPAAP--PSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKP 76
P AP P+ TPP P G P P G P + + G ATP +P P
Sbjct: 1144 PPKGAPTTPAATPPS-----PKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTP 1198
Query: 77 AA-PEDPQ----MPAQPALPQLPRRPRTLDEDGAA---GEAGPVSKAAAGGAPHIGFVGE 128
AA P P+ P+ P P + G A + P + AA +P G
Sbjct: 1199 AATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATP 1258
Query: 129 PPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFP 188
PP AP P A P P + L P P PA + P +P SPP GA P
Sbjct: 1259 PPKGAPTPPAATP------PSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTP 1312
Query: 189 FPVYNGPMAGVPGPATVEHRPLPK 212
P A P P P PK
Sbjct: 1313 ------PAATPPSPKGSPGTPPPK 1330
Score = 60.8 bits (146), Expect = 1e-09
Identities = 60/232 (25%), Positives = 81/232 (34%), Gaps = 46/232 (19%)
Query: 24 PPSRTPPQ------TLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPA 77
PP+ TPP T H + P P GG + S KG +P P P
Sbjct: 1266 PPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPG 1325
Query: 78 APEDPQMPAQPAL-PQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPD 136
P P PA+ P P+ TL + + GP + ++ G PP A P
Sbjct: 1326 TPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSK--------EGPTPPAATPS 1377
Query: 137 PKAAPLLYPPFPQ-----------------VPVVLQPAPS-------ALFPPPAQLYPAA 172
K P + PP P+ +P+ + AP+ A P L P A
Sbjct: 1378 HKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPA 1437
Query: 173 PTP------PALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRPLPKDYMMES 218
TP PA +P G A P + + V P+ E P PK S
Sbjct: 1438 VTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKE-PPAPKQVATSS 1488
Score = 60.1 bits (144), Expect = 2e-09
Identities = 55/192 (28%), Positives = 68/192 (35%), Gaps = 17/192 (8%)
Query: 25 PSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQM 84
P+ TPP P G P P G P + + G PATP +P PAA P +
Sbjct: 1221 PAATPPS-----PKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAA-TPPSL 1274
Query: 85 PAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLY 144
A P P + + GP + + GAP PP PP PK +P
Sbjct: 1275 KGGLATPPHKGAPNPAVVTPPSPKGGPAT-SPPKGAP------TPPAATPPSPKGSPGTP 1327
Query: 145 PP--FPQVPVVLQPAP--SALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVP 200
PP P P V P+P + P PT P+ P A GP P
Sbjct: 1328 PPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPP 1387
Query: 201 GPATVEHRPLPK 212
P P PK
Sbjct: 1388 SPKRGPAIPSPK 1399
Score = 57.8 bits (138), Expect = 1e-08
Identities = 65/232 (28%), Positives = 83/232 (35%), Gaps = 49/232 (21%)
Query: 20 LPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAP 79
LPA PS T PS + GP PA P KGG + P R PA P+
Sbjct: 1349 LPATTPSSKGGPTT---PSSKEGPTPPAATPSH------KGGPAMTPPSPKRGPAIPSPK 1399
Query: 80 EDPQMPAQPALPQLPRR-PRT-LDEDGAAG----------------EAGPVSKAAAGGA- 120
DP PA +P P++ P T + +GAA + P + A GG
Sbjct: 1400 GDPTSPA--VIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPA 1457
Query: 121 -------PHIGFVGEPPPYAPP---------DPKAAPLLYPPF--PQVPVVLQPAPSAL- 161
P + V P P PP PK AP P P +P V+ +P +
Sbjct: 1458 TPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVP 1517
Query: 162 FPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRPLPKD 213
P ++ P APT L P P VP P P PK+
Sbjct: 1518 ATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKE 1569
Score = 57.0 bits (136), Expect = 2e-08
Identities = 56/199 (28%), Positives = 71/199 (35%), Gaps = 27/199 (13%)
Query: 41 PGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPA---------KPAAPEDPQMPAQPALP 91
P PP P G P + + G P++ +P+ PA P Q PA
Sbjct: 856 PTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTS 915
Query: 92 QLPRRPRTLDED-----GAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPP 146
P++ R + + P AA +P G P +AP P A P
Sbjct: 916 SSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKG 975
Query: 147 FPQVPVVL-QPAPSALFPPPAQLYPA------APTPPALFSP-----PAGAAFPFPVYNG 194
P P P P A PP + PA APTPPA+ P PA FP
Sbjct: 976 GPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTP 1035
Query: 195 PMAGVPGP-ATVEHRPLPK 212
P A P P + PLPK
Sbjct: 1036 PAATPPSPKGSPAATPLPK 1054
Score = 51.2 bits (121), Expect = 1e-06
Identities = 60/247 (24%), Positives = 91/247 (36%), Gaps = 36/247 (14%)
Query: 2 GRTSPICKQLREMLERWPLPAAPPSRTPPQTLKH--LPSGEPGPPFPAGMPGG------- 52
G T+P K+ P P+ TPP + +PS + P PA +P
Sbjct: 1359 GPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPAT 1418
Query: 53 -----GSGSDTKGG------------GSPATPEDPRSPAKPAAPEDPQMPA-QPALPQLP 94
G+ + +KG +PAT PA P++ DP +PA P P+ P
Sbjct: 1419 PVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEP 1478
Query: 95 RRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKA-----APLLYPPFPQ 149
P+ + + +A P + A G + P P P + AP +
Sbjct: 1479 PAPKQVATSSSPKKA-PATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKK 1537
Query: 150 VPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRP 209
P L AP PPA P+ PA+ +P A P V P+T + P
Sbjct: 1538 TPATL--APKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVT-PSTYKGAP 1594
Query: 210 LPKDYMM 216
PK+ ++
Sbjct: 1595 SPKELLI 1601
Score = 46.2 bits (108), Expect = 3e-05
Identities = 59/209 (28%), Positives = 73/209 (34%), Gaps = 41/209 (19%)
Query: 20 LPAA-PPSRTPPQTLKHL-----PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSP 73
LPA PPS P K + P P P P G P + + PATP R P
Sbjct: 1467 LPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDP 1526
Query: 74 AKPAA------------PEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAP 121
P A P++ +P +P + P A A P SK A+
Sbjct: 1527 IAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAP--ATPSSKEASS--- 1581
Query: 122 HIGFVGEPPPYAPPDPKAAP----LLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPA 177
PP P K AP LL PP V P+P PPA P+ PA
Sbjct: 1582 -------PPAVTPSTYKGAPSPKELLIPP-----AVTSPSPKEAPTPPAVTPPSPEKGPA 1629
Query: 178 LFSPPAGAAFPFPVYNGPMAGVP-GPATV 205
+P P PV + P PA+V
Sbjct: 1630 TPAPKGTPTSP-PVTPSSLKDSPTSPASV 1657
Score = 44.7 bits (104), Expect = 1e-04
Identities = 60/226 (26%), Positives = 76/226 (33%), Gaps = 51/226 (22%)
Query: 19 PLPAAPPSRTPPQTLK-----HLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSP 73
P P+ PP+ TPP T K H + P P P SG+ SP
Sbjct: 735 PSPSLPPAGTPPGTKKVDGISHTSALAPVASSPKECPTEDSGASATASSKGTLTYLADSP 794
Query: 74 AKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGE-------AGPVSKAAAGGAPH--IG 124
+ PQ +RP T + G+AG + PVS A P +
Sbjct: 795 SPLGVSVSPQ----------TKRPPT--KKGSAGPDTPIGNLSSPVSPVEASFLPENSLS 842
Query: 125 FVGE------------PPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAA 172
F G P P P P A L P +P P PS + P + PA
Sbjct: 843 FQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPAT 902
Query: 173 PTP---PAL----FSPPAGAAFPFPVYNGPMAGVPGPATVEHRPLP 211
P P PAL SP A P P G+P + + P P
Sbjct: 903 PAPKQAPALSMTSSSPKKARATPAP------KGIPASPSPKGAPTP 942
Score = 38.5 bits (88), Expect = 0.007
Identities = 50/216 (23%), Positives = 78/216 (36%), Gaps = 31/216 (14%)
Query: 25 PSRTPPQTLKHL---PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPED 81
P++ P LK + P+ E P A G + P P DP + P
Sbjct: 1673 PAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSPPICP-DPSAKNGSKGPLS 1731
Query: 82 PQMPAQPALPQLPRRPRTLD-EDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAA 140
PA P LP +T +D + GP++ + + + P P++A
Sbjct: 1732 TVAPA-PLLPVQKDSSKTAKGKDASHSPKGPLAPPESKASTPLTAAAFEKVL--PKPESA 1788
Query: 141 PLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAP-----TPPALFSP-------------P 182
+ P P V + L P+P PP Q P++P +P +P P
Sbjct: 1789 SVSAAPSPPVSLPLAPSPVPTLPPKQQFLPSSPGLVLESPSKPLAPADEDELLPLIPPEP 1848
Query: 183 AGAAFPFP--VYNGP---MAGVPGPATVEHRPLPKD 213
PF + N P AG+P P +P+ K+
Sbjct: 1849 ISGGVPFQSVLVNMPTPKSAGIPVPTPSAKQPVTKN 1884
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 71.2 bits (173), Expect = 1e-12
Identities = 66/207 (31%), Positives = 72/207 (34%), Gaps = 39/207 (18%)
Query: 16 ERWPLPAAPPSRTPP----QTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPR 71
+R+P PA P PP QT P G PGPP P G P G G P + P
Sbjct: 215 DRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPP 274
Query: 72 SPAK-PAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPP 130
P P P QP L LP GP G P G PP
Sbjct: 275 PPVLFPGQPF-----GQPPLGPLP--------------PGPPPPVPGYGPPP----GPPP 311
Query: 131 PYAPPDPKAAPLLYPPFPQ----VPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAA 186
P P P P +PP P P+ L P P PPP PA PA F PP +
Sbjct: 312 PQQGPPPPPGP--FPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSG 369
Query: 187 FPFPVYNGPMAGVPGPATVEHRPLPKD 213
P G P P RP P D
Sbjct: 370 MPTSDSRG-----PPPTDPYGRPPPYD 391
Score = 60.8 bits (146), Expect = 1e-09
Identities = 73/224 (32%), Positives = 82/224 (36%), Gaps = 36/224 (16%)
Query: 9 KQLREMLERWPLPAAPPSRTP----------PQTLKHLPSGEPGPPFPAGMPGGGS---- 54
K+L ++L + L P TP Q+ K SG+ AG PGG S
Sbjct: 138 KKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAF 197
Query: 55 --GSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGP- 111
G +G A P R P PA P P P PA PR P L G G GP
Sbjct: 198 PQGGRGRGRFPGAVPGGDRFPG-PAGPGGPP-PPFPAGQTPPRPP--LGPPGPPGPPGPP 253
Query: 112 ----VSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLL--YPPFPQVPV------VLQPAPS 159
V G P+ G PP P P P L PP P PV P P
Sbjct: 254 PPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQ 313
Query: 160 ALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPA 203
PPP +P P PP PP A P P GP G P PA
Sbjct: 314 QGPPPPPGPFP--PRPPGPLGPPLTLA-PPPHLPGPPPGAPPPA 354
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 69.7 bits (169), Expect = 3e-12
Identities = 68/195 (34%), Positives = 78/195 (40%), Gaps = 24/195 (12%)
Query: 21 PAAPPSRTP--PQTLKHLPSGEP-GPPF--PAGMPGGGSGSDTKGGGSPATPEDPRSPAK 75
P+A PS P P PS P GPP PA P G GG PA P
Sbjct: 55 PSATPSTVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSGPSCPPPGGPYPAPTVPGPGPTG 114
Query: 76 PAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGG-APHIGFVGEPPPYAP 134
P P MP P+LPR + AAG GP ++G AP +G G+ P
Sbjct: 115 PYPT--PNMP----FPELPRPYGAPTDPAAAGPLGPWGSMSSGPWAPGMG--GQYPTPNM 166
Query: 135 PDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPA---APT----PPALFSPPAGAAF 187
P P P PP PQ P P P PP A PA APT P L+ P+
Sbjct: 167 PYPSPGPYPAPPPPQAPGAAPPVPWGTVPPGAWGPPAPYPAPTGSYPTPGLYPTPSN--- 223
Query: 188 PFPVYNGPMAGVPGP 202
PF V +GP P P
Sbjct: 224 PFQVPSGPSGAPPMP 238
Score = 46.2 bits (108), Expect = 3e-05
Identities = 53/205 (25%), Positives = 76/205 (37%), Gaps = 43/205 (20%)
Query: 14 MLERWPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSP 73
M + + L A P +P +T + + +PG P P G PG ++ P+ P S
Sbjct: 1 MSDEFSLADALPEHSPAKT-SAVSNTKPGQP-PQGWPGSNPWNN------PSAPSSVPSG 52
Query: 74 AKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYA 133
P+A P T+ P A G P + G PP
Sbjct: 53 LPPSAT-----------------PSTV----------PFGPAPTGMYPSVPPTGPPPGPP 85
Query: 134 PPDPKAAPLLYP---PFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFP 190
P P + P P P+P P V P P+ +P P +P P P + PA A P
Sbjct: 86 APFPPSGPSCPPPGGPYP-APTVPGPGPTGPYPTPNMPFPELPRPYGAPTDPAAAGPLGP 144
Query: 191 ---VYNGPMA-GVPGPATVEHRPLP 211
+ +GP A G+ G + P P
Sbjct: 145 WGSMSSGPWAPGMGGQYPTPNMPYP 169
Score = 46.2 bits (108), Expect = 3e-05
Identities = 35/103 (33%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 119 GAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVV-LQPAPSALFP-------PPAQLYP 170
G P G+ G P P P + P PP V PAP+ ++P PP P
Sbjct: 28 GQPPQGWPGSNPWNNPSAPSSVPSGLPPSATPSTVPFGPAPTGMYPSVPPTGPPPG---P 84
Query: 171 AAPTPPALFS-PPAGAAFPFPVYNGPMAGVPGPATVEHRPLPK 212
AP PP+ S PP G +P P GP G GP + P P+
Sbjct: 85 PAPFPPSGPSCPPPGGPYPAPTVPGP--GPTGPYPTPNMPFPE 125
Score = 31.6 bits (70), Expect = 0.84
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 19 PLPAAPPSRTP----PQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDP-RSP 73
P PA PP + P P +P G GPP P P G + G TP +P + P
Sbjct: 173 PYPAPPPPQAPGAAPPVPWGTVPPGAWGPPAPYPAPTGSYPTP----GLYPTPSNPFQVP 228
Query: 74 AKPAAPEDPQMPAQP 88
+ P+ P MP P
Sbjct: 229 SGPSGA--PPMPGGP 241
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 67.0 bits (162), Expect = 2e-11
Identities = 65/225 (28%), Positives = 89/225 (39%), Gaps = 13/225 (5%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGS--GSDTKGGGSPATP---EDPRSP 73
PLP + L P EPGPP PAG+ + D G +P + E +S
Sbjct: 576 PLPDSDEDEELDLGLGPRPPPEPGPPDPAGLLSQTAEVALDLVGDRTPTSEKMDEGQQSS 635
Query: 74 AKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYA 133
+ D +MP+ P +P + AA A V P GF PPP
Sbjct: 636 GEDMEISDDEMPSAPITSADCPKPMVVTPGAAAVAAPSVLAPTLPLPPPPGFPPLPPPPP 695
Query: 134 PPDPKAAPLLYPPFPQVPVVLQPAPSALF--PPPAQLYPAAPTPPALFSPPAGAAFPFPV 191
PP P+ + PP P P PA A+ PPP P P PP L P FPV
Sbjct: 696 PPPPQPGFPMPPPLPPPPPPPPPAHPAVTVPPPPLPAPPGVPPPPILPPLPPFPPGLFPV 755
Query: 192 YNGPMAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVY 236
M+ V G + +P + M++ +++ L+TG A Y
Sbjct: 756 MQVDMSHVLGG---QWGGMPMSFQMQTQVLSR---LMTGQGACPY 794
Score = 43.1 bits (100), Expect = 3e-04
Identities = 60/206 (29%), Positives = 74/206 (35%), Gaps = 53/206 (25%)
Query: 19 PLPAAPPSRTPPQ--TLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRS-PAK 75
PL P TP +L S E P P G P GS SP P P S PA
Sbjct: 1311 PLAEDHPPHTPGLCGSLAKSQSTETVPATPGGEPPLSGGSSGLSLSSPQVPGSPFSYPAP 1370
Query: 76 PAAPEDPQMPAQPA-----------------LPQLPRRPRTLDEDGAAGEAGPVSKAAAG 118
+ +P P LP P DE +GP++
Sbjct: 1371 SPSLSSGGLPRTPGRDFSFTPTFSEPSGPLLLPVCPLPTGRRDE-----RSGPLA----- 1420
Query: 119 GAPHIGFVGEPPPYAPPDPKAAPLLYP---------PFPQVPVVLQPAPSALFPPPAQLY 169
+P + G P P P P PL P P P P++ PAP A PPP +
Sbjct: 1421 -SPVLLETGLPLPL--PLPLPLPLALPAVLRAQARAPTPLPPLL--PAPLASCPPPMKRK 1475
Query: 170 PAAP--TPPALFS-------PPAGAA 186
P P +PP++ S PPAGAA
Sbjct: 1476 PGRPRRSPPSMLSLDGPLVRPPAGAA 1501
Score = 41.6 bits (96), Expect = 8e-04
Identities = 52/192 (27%), Positives = 67/192 (34%), Gaps = 35/192 (18%)
Query: 21 PAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSP---AKPA 77
PA PP K P PGPP P G G SP + P +P + PA
Sbjct: 432 PAPPPLPPAEPLAKEKPGTPPGPP-PPDTNSMELGGRPTFGWSPEPCDSPGTPTLESSPA 490
Query: 78 APEDPQMPAQPALPQLPRRPRTL-------DEDGAAG-EAGPVSKAAAGGAP-------- 121
PE P + L + RT D D E P+S +++ +P
Sbjct: 491 GPEKPHDSLDSRIEMLLKEQRTKLLFLREPDSDTELQMEGSPISSSSSQLSPLAPFGTNS 550
Query: 122 HIGFVGEPPPYAPPDPKAAPLLYP-PFP------QVPVVLQPAPSALFPPPAQLYPAAPT 174
GF G PP + P + P P P ++ + L P P PP P P
Sbjct: 551 QPGFRGPTPPSSRPSSTGLEDISPTPLPDSDEDEELDLGLGPRP----PPE----PGPPD 602
Query: 175 PPALFSPPAGAA 186
P L S A A
Sbjct: 603 PAGLLSQTAEVA 614
Score = 37.0 bits (84), Expect = 0.020
Identities = 54/220 (24%), Positives = 78/220 (35%), Gaps = 44/220 (20%)
Query: 23 APPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPED- 81
A P +P + +H EP PP +P + P P PR P+ P PE
Sbjct: 1250 ARPPLSPERAPEHDLEVEPEPPMMLPLP-------LQPPLPP--PRPPRPPSPPPEPETT 1300
Query: 82 ----PQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDP 137
P +P +P P L A ++ A GG P + + P
Sbjct: 1301 DASHPSVPPEPLAEDHPPHTPGLCGSLAKSQSTETVPATPGGEPPLSGGSSGLSLSSPQV 1360
Query: 138 KAAPLLYP-PFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAF----PFPV- 191
+P YP P P + + L P + + PT FS P+G P P
Sbjct: 1361 PGSPFSYPAPSPSL------SSGGLPRTPGRDFSFTPT----FSEPSGPLLLPVCPLPTG 1410
Query: 192 ----YNGPMA-------GVPGPATVEHRPLPKDYMMESVL 220
+GP+A G+P P + PLP + +VL
Sbjct: 1411 RRDERSGPLASPVLLETGLPLPLPL---PLPLPLALPAVL 1447
Score = 32.3 bits (72), Expect = 0.50
Identities = 49/208 (23%), Positives = 67/208 (32%), Gaps = 33/208 (15%)
Query: 19 PLPAAPPSRTPPQT-LKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPA 77
P P + +P QT + H P P P P G+ + +PA P P PA+P
Sbjct: 389 PAPGFKSAFSPYQTPVAHFP---PPPEEPTATAAFGARDSGEFRRAPAPP--PLPPAEPL 443
Query: 78 APEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDP 137
A E P P P P +++ G + G P + E P P P
Sbjct: 444 AKEKPGTPPGPPPPD----TNSMELGGRPTFGWSPEPCDSPGTPTL----ESSPAGPEKP 495
Query: 138 --------------KAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPA 183
+ LL+ P LQ S + +QL P AP F +
Sbjct: 496 HDSLDSRIEMLLKEQRTKLLFLREPDSDTELQMEGSPISSSSSQLSPLAP-----FGTNS 550
Query: 184 GAAFPFPVYNGPMAGVPGPATVEHRPLP 211
F P G + PLP
Sbjct: 551 QPGFRGPTPPSSRPSSTGLEDISPTPLP 578
Score = 30.4 bits (67), Expect = 1.9
Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 62 GSPATP-----EDPRSPAKPAAPED-PQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKA 115
G+PA E+ + APE+ P M +P LP P D E G +
Sbjct: 1178 GAPAVDSLGMEEEVDIETEAVAPEERPSMLDEPPLPVGVEEPA--DSREPPEEPGLSQEG 1235
Query: 116 AAGGAPHIGFVGEPPPYAPPDPKAAPLLYPP-FPQVPVVLQPAPSALFPPPAQLYPAAPT 174
A +P EPP + +A P L P P+ + ++P P + P P Q P
Sbjct: 1236 AMLLSP------EPPA---KEVEARPPLSPERAPEHDLEVEPEPPMMLPLPLQPPLPPPR 1286
Query: 175 PPALFSPP 182
PP SPP
Sbjct: 1287 PPRPPSPP 1294
Score = 29.6 bits (65), Expect = 3.2
Identities = 37/132 (28%), Positives = 48/132 (36%), Gaps = 30/132 (22%)
Query: 65 ATPEDPRSPAKPAAPEDPQMPAQ-----PALPQLPRRPRTLDEDGAAGEAGPVSKAAAGG 119
A P R+ A+ P P +PA P + + P RPR + + GP+ + AG
Sbjct: 1442 ALPAVLRAQARAPTPLPPLLPAPLASCPPPMKRKPGRPRRSPPSMLSLD-GPLVRPPAGA 1500
Query: 120 APHIGFVGEPPPYAPPDPKAAPLLYPPFPQV----PVVLQ------PAPSALFPPPAQLY 169
A +G P P+ P FP V L PAP PPP
Sbjct: 1501 A-----LGRELLLLPGQPQT-----PVFPSTHDPRTVTLDFRNAGIPAP----PPPLPPQ 1546
Query: 170 PAAPTPPALFSP 181
P P PP P
Sbjct: 1547 PPPPPPPPPVEP 1558
Score = 28.1 bits (61), Expect = 9.3
Identities = 38/160 (23%), Positives = 50/160 (31%), Gaps = 46/160 (28%)
Query: 18 WPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPA 77
+P+P P PP H P PP PA P P P P P
Sbjct: 703 FPMPPPLPPPPPPPPPAHPAVTVPPPPLPA---------------PPGVPPPPILPPLPP 747
Query: 78 APE--------------DPQMPAQPALPQLPRR--PRTLDEDGAAGEAGPVSKAAAGGAP 121
P Q P Q+ + R + GA ++ AAA +
Sbjct: 748 FPPGLFPVMQVDMSHVLGGQWGGMPMSFQMQTQVLSRLMTGQGACPYPPFMAAAAAAASA 807
Query: 122 HIGFVGEPP---PYA------------PPDPKAAPLLYPP 146
+ FV PP P++ PP PK P + PP
Sbjct: 808 GLQFVNLPPYRGPFSLSNSGPGRGQHWPPLPKFDPSVPPP 847
Score = 28.1 bits (61), Expect = 9.3
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 128 EPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAF 187
EPP + A LL P P V +P S P L P PP + P
Sbjct: 1224 EPPEEPGLSQEGAMLLSPEPPAKEVEARPPLSPERAPEHDL-EVEPEPPMMLPLPLQPPL 1282
Query: 188 PFPVYNGPMAGVPGPATVE--HRPLPKDYMME 217
P P P + P P T + H +P + + E
Sbjct: 1283 PPPRPPRPPSPPPEPETTDASHPSVPPEPLAE 1314
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 65.1 bits (157), Expect = 7e-11
Identities = 63/208 (30%), Positives = 73/208 (35%), Gaps = 29/208 (13%)
Query: 21 PAAPPSRTPPQTLKHLP----SGEPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSPA 74
P PP PP + +G PG P G+PG G G G P P +P
Sbjct: 619 PMGPPGFGPPGPVGEKGIQGVAGNPGQP---GIPGPKGDPGQTITQPGKPGLPGNPGRDG 675
Query: 75 KPAAPEDPQMPAQPALPQLP--RRPRTLDEDGAAGEAGPVSKAAAGGAP-------HIGF 125
P DP +P QP LP +P + + G G GP G P IG
Sbjct: 676 DVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGL 735
Query: 126 VGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPP------ALF 179
G P P P PK P P P P L AL P + +P P PP L
Sbjct: 736 EGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLP 795
Query: 180 SP-----PAGAAFPFPVYNGPMAGVPGP 202
P P G P P GV GP
Sbjct: 796 GPKGDVGPNGQPGPMGPPGLPGIGVQGP 823
Score = 55.1 bits (131), Expect = 7e-08
Identities = 58/194 (29%), Positives = 68/194 (35%), Gaps = 22/194 (11%)
Query: 37 PSGEPGPPFPAGMPG-GGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMP---------A 86
P GEPG P G PG GS D G P P P + +P P P P
Sbjct: 1081 PKGEPGLPGYPGNPGIKGSVGDP---GLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISG 1137
Query: 87 QPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHI----GFVGEP--PPYAPPDPKAA 140
P P LP P + G G+ GP + G I G GEP P + P P
Sbjct: 1138 PPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGL 1197
Query: 141 PLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVP 200
P L + P L P + P P + PP P P GP G P
Sbjct: 1198 PGLSGQKGDGGLPGIPGNPGLPGPKGE--PGFHGFPGVQGPPGPPGSPGPALEGP-KGNP 1254
Query: 201 GPATVEHRPLPKDY 214
GP RP P +
Sbjct: 1255 GPQGPPGRPGPTGF 1268
Score = 53.5 bits (127), Expect = 2e-07
Identities = 42/135 (31%), Positives = 48/135 (35%), Gaps = 22/135 (16%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGG-GSPATP---------E 68
P P PP R P + G PGP P G+PG G KG G P P
Sbjct: 1254 PGPQGPPGRPGPTGFQ----GLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQG 1309
Query: 69 DPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGE 128
P P P M P LP +P P G G AGP G P G +G
Sbjct: 1310 PPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGP------EGEP--GLIGP 1361
Query: 129 PPPYAPPDPKAAPLL 143
P P P P ++
Sbjct: 1362 PGPPGLPGPSGQSII 1376
Score = 53.1 bits (126), Expect = 3e-07
Identities = 60/201 (29%), Positives = 67/201 (33%), Gaps = 34/201 (16%)
Query: 37 PSGEPGPPFPAGMPG-----GGSGSDTKG-------GGSPATPEDPRSPAKPAAPEDPQM 84
PSG PG P G+PG G G + G G P P P +P + DP +
Sbjct: 1046 PSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGL 1105
Query: 85 PAQPAL------PQLPRRPRTLDEDGAAGEAGPVSKAAAGGAP-HIGFVGEPPPYAPPDP 137
P P P LP P T G G +GP G P +G G P PP
Sbjct: 1106 PGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGE 1165
Query: 138 KA--------APLLYPPFPQVPVVLQPAPSALFPPPAQL----YPAAPTPPALFSPPAGA 185
K P P P P P L Q P P P L P
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEP 1225
Query: 186 AF-PFPVYNGPMA--GVPGPA 203
F FP GP G PGPA
Sbjct: 1226 GFHGFPGVQGPPGPPGSPGPA 1246
Score = 52.4 bits (124), Expect = 5e-07
Identities = 59/214 (27%), Positives = 69/214 (32%), Gaps = 33/214 (15%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPG-----------GGSGSDTKG-GGSPAT 66
P P PP P P G PG P P G PG G G D G G +
Sbjct: 807 PGPMGPPGL--PGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGS 864
Query: 67 PEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHI--- 123
P P +P P P +P + P + G G GP+ G P +
Sbjct: 865 PGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGD 924
Query: 124 ----GFVGEPPPYAPPDPKAAP-LLYPPFPQVPVVL-------QPA----PSALFPPPAQ 167
G G P P K P L PP P P +L +P P P Q
Sbjct: 925 DGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQ 984
Query: 168 LYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPG 201
P P P L P P P N + G PG
Sbjct: 985 GLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPG 1018
Score = 52.0 bits (123), Expect = 6e-07
Identities = 50/178 (28%), Positives = 58/178 (32%), Gaps = 20/178 (11%)
Query: 39 GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPR 98
G PG P P G PG G P P+ R P P P P P LP +P
Sbjct: 60 GLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGP-----PGLPGFPGTPGLPGMP---- 110
Query: 99 TLDEDGAAGEAG-PVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPA 157
DGA G G P G G G P PP P P + + + P
Sbjct: 111 --GHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPG 168
Query: 158 PSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRPLPKDYM 215
P P P PP + P P P+ G+ GP P PK M
Sbjct: 169 PKG--------NPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNM 218
Score = 50.4 bits (119), Expect = 2e-06
Identities = 57/185 (30%), Positives = 69/185 (37%), Gaps = 27/185 (14%)
Query: 18 WPLPAAPPSRTPPQTLKHL-----PSGEPGPPFPAGMPG-GGSGSDTKGG-----GSPAT 66
+P P PP RT L P+G+PGP P G+PG G G G G P
Sbjct: 779 FPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGL 838
Query: 67 PEDPRSPAKPAAP--EDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIG 124
P P P + P P + P +P P + G+ G G KA A G P G
Sbjct: 839 HGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPG---KAGASGFP--G 893
Query: 125 FVGEPPPYAPPDPKAAPLLYPPFPQVPVV-----LQPAPSALFP---PPAQLYPAAPTPP 176
GE PP P PL P VP + LQ P P ++ P P PP
Sbjct: 894 TKGEMGMMGPPGP-PGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPP 952
Query: 177 ALFSP 181
P
Sbjct: 953 GPMDP 957
Score = 50.4 bits (119), Expect = 2e-06
Identities = 62/227 (27%), Positives = 74/227 (32%), Gaps = 60/227 (26%)
Query: 39 GEPGPPFP--------------AGMPGGGSGSDTKG-------GGSPATPEDPRSPAKPA 77
G PGPP P G+PG S KG G P P P P
Sbjct: 947 GLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPG 1006
Query: 78 APEDPQMPAQPALPQLPRRPRTLDEDGAAGEAG-------------PVSKAAAG-----G 119
+P +P QP L P T+ + G G G P S G G
Sbjct: 1007 PKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKG 1066
Query: 120 APHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVV-----------LQPAPSALFPPPAQL 168
P I +G P P PK P L P +P P + L P A P
Sbjct: 1067 DPGISSIGLP---GLPGPKGEPGL-PGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPG 1122
Query: 169 YPAAPTPP---ALFSPPAGAAF---PFPVYNGPMAGVPGPATVEHRP 209
+P P PP + PP P PV G G PGP + +P
Sbjct: 1123 FPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKP 1169
Score = 50.1 bits (118), Expect = 2e-06
Identities = 55/199 (27%), Positives = 65/199 (32%), Gaps = 42/199 (21%)
Query: 39 GEPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR 96
G PGPP G PG GG + G P P + P P +P P P P R
Sbjct: 267 GPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGR 326
Query: 97 PRTLDEDGAAGEAGP----VSKAAAG---------GAPHI-------GFVGEPPPYAPPD 136
+ G G GP + + G G P + GF G P P
Sbjct: 327 DGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPG 386
Query: 137 PKAAPLLYPPFPQ-------------VPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPA 183
P A ++ PP P P + P P L P P P PP PA
Sbjct: 387 PPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGA--PGLPGPPG----PA 440
Query: 184 GAAFPFPVYNGPMAGVPGP 202
G P P G PGP
Sbjct: 441 GPHIP-PSDEICEPGPPGP 458
Score = 44.7 bits (104), Expect = 1e-04
Identities = 52/199 (26%), Positives = 63/199 (31%), Gaps = 42/199 (21%)
Query: 39 GEPGPPFPAGM----PGGGSGSDTKGG-GSPATPEDPRSPAKPAAPEDPQMPAQPALPQL 93
G+ GPP P G+ PG G KG G P P + P P +P P +
Sbjct: 334 GDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVM 393
Query: 94 --PRRPRTLDEDGAAGEAGPVSKAAAG--------GAPHIGFVGEPPPYAPPDPKAAPLL 143
P P E G G+ GP + G GAP G G P P P P + +
Sbjct: 394 GPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAP--GLPGPPGPAGPHIPPSDEIC 451
Query: 144 YPPFPQVP--------------------VVLQPAPSALFPPPAQLYPAAPTPPALFSPPA 183
P P P + + PP Q P P L PP
Sbjct: 452 EPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ-----PGLPGLPGPPG 506
Query: 184 GAAFPFPVYNGPMAGVPGP 202
FP AG GP
Sbjct: 507 SLGFPGQKGEKGQAGATGP 525
Score = 44.7 bits (104), Expect = 1e-04
Identities = 62/200 (31%), Positives = 68/200 (34%), Gaps = 31/200 (15%)
Query: 21 PAAPPSRTPPQTL-KHLPSG----EPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSP 73
P AP PP H+P EPGPP P G PG G G G D
Sbjct: 428 PGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQ----GVKGDKGDTCFN 483
Query: 74 AKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYA 133
P P QP LP LP P +L G GE G G P G G P
Sbjct: 484 CIGTGISGP--PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLP--GIPGAPGAPG 539
Query: 134 PPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAP-TP-----PALFSP---PAG 184
P K P FP ++ L P A P P TP P L P P G
Sbjct: 540 FPGSKGEPGDILTFPG----MKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGG 595
Query: 185 AAFP---FPVYNGPMAGVPG 201
F P N + G+PG
Sbjct: 596 ITFKGERGPPGNPGLPGLPG 615
Score = 43.1 bits (100), Expect = 3e-04
Identities = 63/209 (30%), Positives = 70/209 (33%), Gaps = 33/209 (15%)
Query: 25 PSRTPPQTLKHLPS--GEPGPPFPAGMPG----GGSG-------SDTKG-GGSPATPEDP 70
P + P K P G PGP G PG G G S KG GG P P +P
Sbjct: 1157 PGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNP 1216
Query: 71 RSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPP 130
P P P P P P E G G GP + G GF G P
Sbjct: 1217 GLPGPKGEPGFHGFPGVQGPPGPPGSPGPALE-GPKGNPGP--QGPPGRPGPTGFQGLPG 1273
Query: 131 PYAPP---------DPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSP 181
P PP K P P P +P + PP Q P P +
Sbjct: 1274 PEGPPGLPGNGGIKGEKGNP-GQPGLPGLPGL----KGDQGPPGLQGNPGRPGLNGMKGD 1328
Query: 182 PAGAAFP-FPVYNGPMAGVPGPATVEHRP 209
P P FP GP +GVPG A E P
Sbjct: 1329 PGLPGVPGFPGMKGP-SGVPGSAGPEGEP 1356
Score = 42.4 bits (98), Expect = 5e-04
Identities = 39/110 (35%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 37 PSGEPG---PPFPAGMPG-GGSGSDTKG-GGSPATPEDPRSPAKPAAPEDPQ-MPAQPAL 90
P GEPG PP P G+PG G KG G P P P P P+ PQ +P
Sbjct: 1352 PEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLP-GPQGPQGLPGPTGP 1410
Query: 91 PQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPP---YAPPDP 137
P P R DGA G G G G G P P PP P
Sbjct: 1411 PGDPGRNGLPGFDGAGGRKGDPGLPGQPGTR--GLDGPPGPDGLQGPPGP 1458
Score = 41.6 bits (96), Expect = 8e-04
Identities = 54/195 (27%), Positives = 63/195 (32%), Gaps = 22/195 (11%)
Query: 21 PAAPPSRTPPQTLKHLPS-----GEPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSP 73
P P S+ P + P GE G P G+PG G G D G P P P
Sbjct: 538 PGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQD----GLPGLPGPKGEP 593
Query: 74 AKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPV-SKAAAGGAPHIGFVGEPPPY 132
+ P P LP LP + G G GPV K G A + G G P P
Sbjct: 594 GGITFKGERGPPGNPGLPGLPGNIGPMGPPG-FGPPGPVGEKGIQGVAGNPGQPGIPGPK 652
Query: 133 APPDPKAAPLLYPPFPQVP-----VVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAF 187
P P P P V L P P P + P + G
Sbjct: 653 GDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGI----PGIGL 708
Query: 188 PFPVYNGPMAGVPGP 202
P P G+PGP
Sbjct: 709 PGPPGPKGFPGIPGP 723
Score = 39.7 bits (91), Expect = 0.003
Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 37 PSGEPGPPFPAGMPG--GGSGSDTKGG--GSPATPEDPRSPAKPAAPEDPQMPAQPALPQ 92
P G PG P G+PG G G+ G G T + P P P P P +P
Sbjct: 94 PPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPG 153
Query: 93 LPRRPRTL---DEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFP 148
+ P ++ G G G G P G G P P PP P L+ PP P
Sbjct: 154 MKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLP--GPTGIPGPIGPPGPPG--LMGPPGP 208
Score = 37.0 bits (84), Expect = 0.020
Identities = 50/175 (28%), Positives = 58/175 (33%), Gaps = 50/175 (28%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR 96
P G+ G P P G P G +G D G P+ P P P P LP +
Sbjct: 773 PKGDRGFPGPPG-PPGRTGLDGLPG--------PKGDVGPNGQPGPMGP--PGLPGI--- 818
Query: 97 PRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQP 156
G G GP G P G +G+P + P K P PP VP
Sbjct: 819 -------GVQGPPGP------PGIP--GPIGQPGLHGIPGEKGDP--GPPGLDVP----- 856
Query: 157 APSALFPPPAQLYPAAPTPPALFSPPAGAAFP-------FPVYNGPMA--GVPGP 202
PP + P P P PP P FP G M G PGP
Sbjct: 857 -----GPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGP 906
Score = 32.0 bits (71), Expect = 0.65
Identities = 39/149 (26%), Positives = 48/149 (32%), Gaps = 16/149 (10%)
Query: 39 GEPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQL--- 93
G GPP P G+PG G GS + P +P P P +P +P
Sbjct: 141 GLQGPPGPPGIPGMKGEPGSIIMS----SLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGP 196
Query: 94 PRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVV 153
P P + G G GP G GE PP P + + V
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQ--ISEQKRPIDVE 254
Query: 154 LQPAPSALFPPPAQLYPAAPTPPALFSPP 182
Q L P P P PP + PP
Sbjct: 255 FQKGDQGL---PGDRGP--PGPPGIRGPP 278
Score = 30.0 bits (66), Expect = 2.5
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 25 PSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDP--RSPAKPAAPEDP 82
P PQ L P+G PG P G+PG K G P P P R P P+
Sbjct: 1396 PGPQGPQGLPG-PTGPPGDPGRNGLPGFDGAGGRK--GDPGLPGQPGTRGLDGPPGPDGL 1452
Query: 83 QMPAQP 88
Q P P
Sbjct: 1453 QGPPGP 1458
Score = 28.9 bits (63), Expect = 5.5
Identities = 35/140 (25%), Positives = 42/140 (30%), Gaps = 36/140 (25%)
Query: 101 DEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKA-----------------APLL 143
D G GE G + G H G G P P PP P+ P
Sbjct: 39 DCSGIKGEKG--ERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPG 96
Query: 144 YPPFPQVPVV-----------LQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVY 192
P FP P + Q P + +P +P P L PP P
Sbjct: 97 LPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIP---- 152
Query: 193 NGPMAGVPGPATVEHRPLPK 212
M G PG + P PK
Sbjct: 153 --GMKGEPGSIIMSSLPGPK 170
Score = 28.5 bits (62), Expect = 7.2
Identities = 24/85 (28%), Positives = 28/85 (32%), Gaps = 12/85 (14%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR 96
P G PG P P G+ G + G P P P P P LP P+
Sbjct: 169 PKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGP-----------PGPPGLPG-PKG 216
Query: 97 PRTLDEDGAAGEAGPVSKAAAGGAP 121
L+ G GE G G P
Sbjct: 217 NMGLNFQGPKGEKGEQGLQGPPGPP 241
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 65.1 bits (157), Expect = 7e-11
Identities = 63/208 (30%), Positives = 73/208 (35%), Gaps = 29/208 (13%)
Query: 21 PAAPPSRTPPQTLKHLP----SGEPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSPA 74
P PP PP + +G PG P G+PG G G G P P +P
Sbjct: 619 PMGPPGFGPPGPVGEKGIQGVAGNPGQP---GIPGPKGDPGQTITQPGKPGLPGNPGRDG 675
Query: 75 KPAAPEDPQMPAQPALPQLP--RRPRTLDEDGAAGEAGPVSKAAAGGAP-------HIGF 125
P DP +P QP LP +P + + G G GP G P IG
Sbjct: 676 DVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGL 735
Query: 126 VGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPP------ALF 179
G P P P PK P P P P L AL P + +P P PP L
Sbjct: 736 EGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLP 795
Query: 180 SP-----PAGAAFPFPVYNGPMAGVPGP 202
P P G P P GV GP
Sbjct: 796 GPKGDVGPNGQPGPMGPPGLPGIGVQGP 823
Score = 53.5 bits (127), Expect = 2e-07
Identities = 57/189 (30%), Positives = 66/189 (34%), Gaps = 22/189 (11%)
Query: 37 PSGEPGPPFPAGMPG-GGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMP---------A 86
P GEPG P G PG GS D G P P P + +P P P P
Sbjct: 1081 PKGEPGLPGYPGNPGIKGSVGDP---GLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISG 1137
Query: 87 QPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHI----GFVGEP--PPYAPPDPKAA 140
P P LP P + G G+ GP + G I G GEP P + P P
Sbjct: 1138 PPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGL 1197
Query: 141 PLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVP 200
P L + P L P + P P + PP P P GP G P
Sbjct: 1198 PGLSGQKGDGGLPGIPGNPGLPGPKGE--PGFHGFPGVQGPPGPPGSPGPALEGP-KGNP 1254
Query: 201 GPATVEHRP 209
GP RP
Sbjct: 1255 GPQGPPGRP 1263
Score = 53.1 bits (126), Expect = 3e-07
Identities = 60/201 (29%), Positives = 67/201 (33%), Gaps = 34/201 (16%)
Query: 37 PSGEPGPPFPAGMPG-----GGSGSDTKG-------GGSPATPEDPRSPAKPAAPEDPQM 84
PSG PG P G+PG G G + G G P P P +P + DP +
Sbjct: 1046 PSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGL 1105
Query: 85 PAQPAL------PQLPRRPRTLDEDGAAGEAGPVSKAAAGGAP-HIGFVGEPPPYAPPDP 137
P P P LP P T G G +GP G P +G G P PP
Sbjct: 1106 PGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGE 1165
Query: 138 KA--------APLLYPPFPQVPVVLQPAPSALFPPPAQL----YPAAPTPPALFSPPAGA 185
K P P P P P L Q P P P L P
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEP 1225
Query: 186 AF-PFPVYNGPMA--GVPGPA 203
F FP GP G PGPA
Sbjct: 1226 GFHGFPGVQGPPGPPGSPGPA 1246
Score = 52.4 bits (124), Expect = 5e-07
Identities = 59/214 (27%), Positives = 69/214 (32%), Gaps = 33/214 (15%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPG-----------GGSGSDTKG-GGSPAT 66
P P PP P P G PG P P G PG G G D G G +
Sbjct: 807 PGPMGPPGL--PGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGS 864
Query: 67 PEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHI--- 123
P P +P P P +P + P + G G GP+ G P +
Sbjct: 865 PGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGD 924
Query: 124 ----GFVGEPPPYAPPDPKAAP-LLYPPFPQVPVVL-------QPA----PSALFPPPAQ 167
G G P P K P L PP P P +L +P P P Q
Sbjct: 925 DGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQ 984
Query: 168 LYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPG 201
P P P L P P P N + G PG
Sbjct: 985 GLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPG 1018
Score = 52.0 bits (123), Expect = 6e-07
Identities = 50/178 (28%), Positives = 58/178 (32%), Gaps = 20/178 (11%)
Query: 39 GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPR 98
G PG P P G PG G P P+ R P P P P P LP +P
Sbjct: 60 GLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGP-----PGLPGFPGTPGLPGMP---- 110
Query: 99 TLDEDGAAGEAG-PVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPA 157
DGA G G P G G G P PP P P + + + P
Sbjct: 111 --GHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPG 168
Query: 158 PSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRPLPKDYM 215
P P P PP + P P P+ G+ GP P PK M
Sbjct: 169 PKG--------NPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNM 218
Score = 50.4 bits (119), Expect = 2e-06
Identities = 57/185 (30%), Positives = 69/185 (37%), Gaps = 27/185 (14%)
Query: 18 WPLPAAPPSRTPPQTLKHL-----PSGEPGPPFPAGMPG-GGSGSDTKGG-----GSPAT 66
+P P PP RT L P+G+PGP P G+PG G G G G P
Sbjct: 779 FPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGL 838
Query: 67 PEDPRSPAKPAAP--EDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIG 124
P P P + P P + P +P P + G+ G G KA A G P G
Sbjct: 839 HGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPG---KAGASGFP--G 893
Query: 125 FVGEPPPYAPPDPKAAPLLYPPFPQVPVV-----LQPAPSALFP---PPAQLYPAAPTPP 176
GE PP P PL P VP + LQ P P ++ P P PP
Sbjct: 894 TKGEMGMMGPPGP-PGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPP 952
Query: 177 ALFSP 181
P
Sbjct: 953 GPMDP 957
Score = 50.4 bits (119), Expect = 2e-06
Identities = 62/227 (27%), Positives = 74/227 (32%), Gaps = 60/227 (26%)
Query: 39 GEPGPPFP--------------AGMPGGGSGSDTKG-------GGSPATPEDPRSPAKPA 77
G PGPP P G+PG S KG G P P P P
Sbjct: 947 GLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPG 1006
Query: 78 APEDPQMPAQPALPQLPRRPRTLDEDGAAGEAG-------------PVSKAAAG-----G 119
+P +P QP L P T+ + G G G P S G G
Sbjct: 1007 PKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKG 1066
Query: 120 APHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVV-----------LQPAPSALFPPPAQL 168
P I +G P P PK P L P +P P + L P A P
Sbjct: 1067 DPGISSIGLP---GLPGPKGEPGL-PGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPG 1122
Query: 169 YPAAPTPP---ALFSPPAGAAF---PFPVYNGPMAGVPGPATVEHRP 209
+P P PP + PP P PV G G PGP + +P
Sbjct: 1123 FPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKP 1169
Score = 50.1 bits (118), Expect = 2e-06
Identities = 55/199 (27%), Positives = 65/199 (32%), Gaps = 42/199 (21%)
Query: 39 GEPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR 96
G PGPP G PG GG + G P P + P P +P P P P R
Sbjct: 267 GPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGR 326
Query: 97 PRTLDEDGAAGEAGP----VSKAAAG---------GAPHI-------GFVGEPPPYAPPD 136
+ G G GP + + G G P + GF G P P
Sbjct: 327 DGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPG 386
Query: 137 PKAAPLLYPPFPQ-------------VPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPA 183
P A ++ PP P P + P P L P P P PP PA
Sbjct: 387 PPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGA--PGLPGPPG----PA 440
Query: 184 GAAFPFPVYNGPMAGVPGP 202
G P P G PGP
Sbjct: 441 GPHIP-PSDEICEPGPPGP 458
Score = 50.1 bits (118), Expect = 2e-06
Identities = 41/135 (30%), Positives = 46/135 (34%), Gaps = 28/135 (20%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGG-GSPATPE--------- 68
P P PP R G PGP P G+PG G KG G P P
Sbjct: 1254 PGPQGPPGRP----------GLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQG 1303
Query: 69 DPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGE 128
P P P M P LP +P P G G AGP G P G +G
Sbjct: 1304 PPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGP------EGEP--GLIGP 1355
Query: 129 PPPYAPPDPKAAPLL 143
P P P P ++
Sbjct: 1356 PGPPGLPGPSGQSII 1370
Score = 44.7 bits (104), Expect = 1e-04
Identities = 52/199 (26%), Positives = 63/199 (31%), Gaps = 42/199 (21%)
Query: 39 GEPGPPFPAGM----PGGGSGSDTKGG-GSPATPEDPRSPAKPAAPEDPQMPAQPALPQL 93
G+ GPP P G+ PG G KG G P P + P P +P P +
Sbjct: 334 GDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVM 393
Query: 94 --PRRPRTLDEDGAAGEAGPVSKAAAG--------GAPHIGFVGEPPPYAPPDPKAAPLL 143
P P E G G+ GP + G GAP G G P P P P + +
Sbjct: 394 GPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAP--GLPGPPGPAGPHIPPSDEIC 451
Query: 144 YPPFPQVP--------------------VVLQPAPSALFPPPAQLYPAAPTPPALFSPPA 183
P P P + + PP Q P P L PP
Sbjct: 452 EPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ-----PGLPGLPGPPG 506
Query: 184 GAAFPFPVYNGPMAGVPGP 202
FP AG GP
Sbjct: 507 SLGFPGQKGEKGQAGATGP 525
Score = 44.7 bits (104), Expect = 1e-04
Identities = 62/200 (31%), Positives = 68/200 (34%), Gaps = 31/200 (15%)
Query: 21 PAAPPSRTPPQTL-KHLPSG----EPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSP 73
P AP PP H+P EPGPP P G PG G G G D
Sbjct: 428 PGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQ----GVKGDKGDTCFN 483
Query: 74 AKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYA 133
P P QP LP LP P +L G GE G G P G G P
Sbjct: 484 CIGTGISGP--PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLP--GIPGAPGAPG 539
Query: 134 PPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAP-TP-----PALFSP---PAG 184
P K P FP ++ L P A P P TP P L P P G
Sbjct: 540 FPGSKGEPGDILTFPG----MKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGG 595
Query: 185 AAFP---FPVYNGPMAGVPG 201
F P N + G+PG
Sbjct: 596 ITFKGERGPPGNPGLPGLPG 615
Score = 42.4 bits (98), Expect = 5e-04
Identities = 52/196 (26%), Positives = 60/196 (30%), Gaps = 13/196 (6%)
Query: 25 PSRTPPQTLKHLPS--GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDP 82
P + P K P G PGP G PG + G P P P +P
Sbjct: 1157 PGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNP 1216
Query: 83 QMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAP- 141
+P P P G G GP + G G G P P P P
Sbjct: 1217 GLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPG 1276
Query: 142 -------LLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFP-FPVYN 193
P P +P L PP Q P P + P P FP
Sbjct: 1277 NGGIKGEKGNPGQPGLP-GLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMK 1335
Query: 194 GPMAGVPGPATVEHRP 209
GP +GVPG A E P
Sbjct: 1336 GP-SGVPGSAGPEGEP 1350
Score = 42.4 bits (98), Expect = 5e-04
Identities = 39/110 (35%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 37 PSGEPG---PPFPAGMPG-GGSGSDTKG-GGSPATPEDPRSPAKPAAPEDPQ-MPAQPAL 90
P GEPG PP P G+PG G KG G P P P P P+ PQ +P
Sbjct: 1346 PEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLP-GPQGPQGLPGPTGP 1404
Query: 91 PQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPP---YAPPDP 137
P P R DGA G G G G G P P PP P
Sbjct: 1405 PGDPGRNGLPGFDGAGGRKGDPGLPGQPGTR--GLDGPPGPDGLQGPPGP 1452
Score = 41.6 bits (96), Expect = 8e-04
Identities = 54/195 (27%), Positives = 63/195 (32%), Gaps = 22/195 (11%)
Query: 21 PAAPPSRTPPQTLKHLPS-----GEPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSP 73
P P S+ P + P GE G P G+PG G G D G P P P
Sbjct: 538 PGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQD----GLPGLPGPKGEP 593
Query: 74 AKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPV-SKAAAGGAPHIGFVGEPPPY 132
+ P P LP LP + G G GPV K G A + G G P P
Sbjct: 594 GGITFKGERGPPGNPGLPGLPGNIGPMGPPG-FGPPGPVGEKGIQGVAGNPGQPGIPGPK 652
Query: 133 APPDPKAAPLLYPPFPQVP-----VVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAF 187
P P P P V L P P P + P + G
Sbjct: 653 GDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGI----PGIGL 708
Query: 188 PFPVYNGPMAGVPGP 202
P P G+PGP
Sbjct: 709 PGPPGPKGFPGIPGP 723
Score = 39.7 bits (91), Expect = 0.003
Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 37 PSGEPGPPFPAGMPG--GGSGSDTKGG--GSPATPEDPRSPAKPAAPEDPQMPAQPALPQ 92
P G PG P G+PG G G+ G G T + P P P P P +P
Sbjct: 94 PPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPG 153
Query: 93 LPRRPRTL---DEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFP 148
+ P ++ G G G G P G G P P PP P L+ PP P
Sbjct: 154 MKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLP--GPTGIPGPIGPPGPPG--LMGPPGP 208
Score = 37.0 bits (84), Expect = 0.020
Identities = 50/175 (28%), Positives = 58/175 (33%), Gaps = 50/175 (28%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR 96
P G+ G P P G P G +G D G P+ P P P P LP +
Sbjct: 773 PKGDRGFPGPPG-PPGRTGLDGLPG--------PKGDVGPNGQPGPMGP--PGLPGI--- 818
Query: 97 PRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQP 156
G G GP G P G +G+P + P K P PP VP
Sbjct: 819 -------GVQGPPGP------PGIP--GPIGQPGLHGIPGEKGDP--GPPGLDVP----- 856
Query: 157 APSALFPPPAQLYPAAPTPPALFSPPAGAAFP-------FPVYNGPMA--GVPGP 202
PP + P P P PP P FP G M G PGP
Sbjct: 857 -----GPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGP 906
Score = 32.0 bits (71), Expect = 0.65
Identities = 39/149 (26%), Positives = 48/149 (32%), Gaps = 16/149 (10%)
Query: 39 GEPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQL--- 93
G GPP P G+PG G GS + P +P P P +P +P
Sbjct: 141 GLQGPPGPPGIPGMKGEPGSIIMS----SLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGP 196
Query: 94 PRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVV 153
P P + G G GP G GE PP P + + V
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQ--ISEQKRPIDVE 254
Query: 154 LQPAPSALFPPPAQLYPAAPTPPALFSPP 182
Q L P P P PP + PP
Sbjct: 255 FQKGDQGL---PGDRGP--PGPPGIRGPP 278
Score = 30.0 bits (66), Expect = 2.5
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 25 PSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDP--RSPAKPAAPEDP 82
P PQ L P+G PG P G+PG K G P P P R P P+
Sbjct: 1390 PGPQGPQGLPG-PTGPPGDPGRNGLPGFDGAGGRK--GDPGLPGQPGTRGLDGPPGPDGL 1446
Query: 83 QMPAQP 88
Q P P
Sbjct: 1447 QGPPGP 1452
Score = 28.9 bits (63), Expect = 5.5
Identities = 35/140 (25%), Positives = 42/140 (30%), Gaps = 36/140 (25%)
Query: 101 DEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKA-----------------APLL 143
D G GE G + G H G G P P PP P+ P
Sbjct: 39 DCSGIKGEKG--ERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPG 96
Query: 144 YPPFPQVPVV-----------LQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVY 192
P FP P + Q P + +P +P P L PP P
Sbjct: 97 LPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIP---- 152
Query: 193 NGPMAGVPGPATVEHRPLPK 212
M G PG + P PK
Sbjct: 153 --GMKGEPGSIIMSSLPGPK 170
Score = 28.5 bits (62), Expect = 7.2
Identities = 24/85 (28%), Positives = 28/85 (32%), Gaps = 12/85 (14%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR 96
P G PG P P G+ G + G P P P P P LP P+
Sbjct: 169 PKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGP-----------PGPPGLPG-PKG 216
Query: 97 PRTLDEDGAAGEAGPVSKAAAGGAP 121
L+ G GE G G P
Sbjct: 217 NMGLNFQGPKGEKGEQGLQGPPGPP 241
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 65.1 bits (157), Expect = 7e-11
Identities = 63/208 (30%), Positives = 73/208 (35%), Gaps = 29/208 (13%)
Query: 21 PAAPPSRTPPQTLKHLP----SGEPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSPA 74
P PP PP + +G PG P G+PG G G G P P +P
Sbjct: 619 PMGPPGFGPPGPVGEKGIQGVAGNPGQP---GIPGPKGDPGQTITQPGKPGLPGNPGRDG 675
Query: 75 KPAAPEDPQMPAQPALPQLP--RRPRTLDEDGAAGEAGPVSKAAAGGAP-------HIGF 125
P DP +P QP LP +P + + G G GP G P IG
Sbjct: 676 DVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGL 735
Query: 126 VGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPP------ALF 179
G P P P PK P P P P L AL P + +P P PP L
Sbjct: 736 EGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLP 795
Query: 180 SP-----PAGAAFPFPVYNGPMAGVPGP 202
P P G P P GV GP
Sbjct: 796 GPKGDVGPNGQPGPMGPPGLPGIGVQGP 823
Score = 53.5 bits (127), Expect = 2e-07
Identities = 57/189 (30%), Positives = 66/189 (34%), Gaps = 22/189 (11%)
Query: 37 PSGEPGPPFPAGMPG-GGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMP---------A 86
P GEPG P G PG GS D G P P P + +P P P P
Sbjct: 1081 PKGEPGLPGYPGNPGIKGSVGDP---GLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISG 1137
Query: 87 QPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHI----GFVGEP--PPYAPPDPKAA 140
P P LP P + G G+ GP + G I G GEP P + P P
Sbjct: 1138 PPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGL 1197
Query: 141 PLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVP 200
P L + P L P + P P + PP P P GP G P
Sbjct: 1198 PGLSGQKGDGGLPGIPGNPGLPGPKGE--PGFHGFPGVQGPPGPPGSPGPALEGP-KGNP 1254
Query: 201 GPATVEHRP 209
GP RP
Sbjct: 1255 GPQGPPGRP 1263
Score = 53.1 bits (126), Expect = 3e-07
Identities = 60/201 (29%), Positives = 67/201 (33%), Gaps = 34/201 (16%)
Query: 37 PSGEPGPPFPAGMPG-----GGSGSDTKG-------GGSPATPEDPRSPAKPAAPEDPQM 84
PSG PG P G+PG G G + G G P P P +P + DP +
Sbjct: 1046 PSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGL 1105
Query: 85 PAQPAL------PQLPRRPRTLDEDGAAGEAGPVSKAAAGGAP-HIGFVGEPPPYAPPDP 137
P P P LP P T G G +GP G P +G G P PP
Sbjct: 1106 PGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGE 1165
Query: 138 KA--------APLLYPPFPQVPVVLQPAPSALFPPPAQL----YPAAPTPPALFSPPAGA 185
K P P P P P L Q P P P L P
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEP 1225
Query: 186 AF-PFPVYNGPMA--GVPGPA 203
F FP GP G PGPA
Sbjct: 1226 GFHGFPGVQGPPGPPGSPGPA 1246
Score = 52.4 bits (124), Expect = 5e-07
Identities = 59/214 (27%), Positives = 69/214 (32%), Gaps = 33/214 (15%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPG-----------GGSGSDTKG-GGSPAT 66
P P PP P P G PG P P G PG G G D G G +
Sbjct: 807 PGPMGPPGL--PGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGS 864
Query: 67 PEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHI--- 123
P P +P P P +P + P + G G GP+ G P +
Sbjct: 865 PGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGD 924
Query: 124 ----GFVGEPPPYAPPDPKAAP-LLYPPFPQVPVVL-------QPA----PSALFPPPAQ 167
G G P P K P L PP P P +L +P P P Q
Sbjct: 925 DGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQ 984
Query: 168 LYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPG 201
P P P L P P P N + G PG
Sbjct: 985 GLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPG 1018
Score = 52.0 bits (123), Expect = 6e-07
Identities = 50/178 (28%), Positives = 58/178 (32%), Gaps = 20/178 (11%)
Query: 39 GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPR 98
G PG P P G PG G P P+ R P P P P P LP +P
Sbjct: 60 GLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGP-----PGLPGFPGTPGLPGMP---- 110
Query: 99 TLDEDGAAGEAG-PVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPA 157
DGA G G P G G G P PP P P + + + P
Sbjct: 111 --GHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPG 168
Query: 158 PSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRPLPKDYM 215
P P P PP + P P P+ G+ GP P PK M
Sbjct: 169 PKG--------NPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNM 218
Score = 50.8 bits (120), Expect = 1e-06
Identities = 42/135 (31%), Positives = 47/135 (34%), Gaps = 25/135 (18%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGG-GSPATPE--------- 68
P P PP R Q G PGP P G+PG G KG G P P
Sbjct: 1254 PGPQGPPGRPGFQ-------GLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQG 1306
Query: 69 DPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGE 128
P P P M P LP +P P G G AGP G P G +G
Sbjct: 1307 PPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGP------EGEP--GLIGP 1358
Query: 129 PPPYAPPDPKAAPLL 143
P P P P ++
Sbjct: 1359 PGPPGLPGPSGQSII 1373
Score = 50.4 bits (119), Expect = 2e-06
Identities = 57/185 (30%), Positives = 69/185 (37%), Gaps = 27/185 (14%)
Query: 18 WPLPAAPPSRTPPQTLKHL-----PSGEPGPPFPAGMPG-GGSGSDTKGG-----GSPAT 66
+P P PP RT L P+G+PGP P G+PG G G G G P
Sbjct: 779 FPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGL 838
Query: 67 PEDPRSPAKPAAP--EDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIG 124
P P P + P P + P +P P + G+ G G KA A G P G
Sbjct: 839 HGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPG---KAGASGFP--G 893
Query: 125 FVGEPPPYAPPDPKAAPLLYPPFPQVPVV-----LQPAPSALFP---PPAQLYPAAPTPP 176
GE PP P PL P VP + LQ P P ++ P P PP
Sbjct: 894 TKGEMGMMGPPGP-PGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPP 952
Query: 177 ALFSP 181
P
Sbjct: 953 GPMDP 957
Score = 50.4 bits (119), Expect = 2e-06
Identities = 62/227 (27%), Positives = 74/227 (32%), Gaps = 60/227 (26%)
Query: 39 GEPGPPFP--------------AGMPGGGSGSDTKG-------GGSPATPEDPRSPAKPA 77
G PGPP P G+PG S KG G P P P P
Sbjct: 947 GLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPG 1006
Query: 78 APEDPQMPAQPALPQLPRRPRTLDEDGAAGEAG-------------PVSKAAAG-----G 119
+P +P QP L P T+ + G G G P S G G
Sbjct: 1007 PKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKG 1066
Query: 120 APHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVV-----------LQPAPSALFPPPAQL 168
P I +G P P PK P L P +P P + L P A P
Sbjct: 1067 DPGISSIGLP---GLPGPKGEPGL-PGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPG 1122
Query: 169 YPAAPTPP---ALFSPPAGAAF---PFPVYNGPMAGVPGPATVEHRP 209
+P P PP + PP P PV G G PGP + +P
Sbjct: 1123 FPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKP 1169
Score = 50.1 bits (118), Expect = 2e-06
Identities = 55/199 (27%), Positives = 65/199 (32%), Gaps = 42/199 (21%)
Query: 39 GEPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR 96
G PGPP G PG GG + G P P + P P +P P P P R
Sbjct: 267 GPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGR 326
Query: 97 PRTLDEDGAAGEAGP----VSKAAAG---------GAPHI-------GFVGEPPPYAPPD 136
+ G G GP + + G G P + GF G P P
Sbjct: 327 DGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPG 386
Query: 137 PKAAPLLYPPFPQ-------------VPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPA 183
P A ++ PP P P + P P L P P P PP PA
Sbjct: 387 PPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGA--PGLPGPPG----PA 440
Query: 184 GAAFPFPVYNGPMAGVPGP 202
G P P G PGP
Sbjct: 441 GPHIP-PSDEICEPGPPGP 458
Score = 44.7 bits (104), Expect = 1e-04
Identities = 52/199 (26%), Positives = 63/199 (31%), Gaps = 42/199 (21%)
Query: 39 GEPGPPFPAGM----PGGGSGSDTKGG-GSPATPEDPRSPAKPAAPEDPQMPAQPALPQL 93
G+ GPP P G+ PG G KG G P P + P P +P P +
Sbjct: 334 GDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVM 393
Query: 94 --PRRPRTLDEDGAAGEAGPVSKAAAG--------GAPHIGFVGEPPPYAPPDPKAAPLL 143
P P E G G+ GP + G GAP G G P P P P + +
Sbjct: 394 GPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAP--GLPGPPGPAGPHIPPSDEIC 451
Query: 144 YPPFPQVP--------------------VVLQPAPSALFPPPAQLYPAAPTPPALFSPPA 183
P P P + + PP Q P P L PP
Sbjct: 452 EPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ-----PGLPGLPGPPG 506
Query: 184 GAAFPFPVYNGPMAGVPGP 202
FP AG GP
Sbjct: 507 SLGFPGQKGEKGQAGATGP 525
Score = 44.7 bits (104), Expect = 1e-04
Identities = 62/200 (31%), Positives = 68/200 (34%), Gaps = 31/200 (15%)
Query: 21 PAAPPSRTPPQTL-KHLPSG----EPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSP 73
P AP PP H+P EPGPP P G PG G G G D
Sbjct: 428 PGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQ----GVKGDKGDTCFN 483
Query: 74 AKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYA 133
P P QP LP LP P +L G GE G G P G G P
Sbjct: 484 CIGTGISGP--PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLP--GIPGAPGAPG 539
Query: 134 PPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAP-TP-----PALFSP---PAG 184
P K P FP ++ L P A P P TP P L P P G
Sbjct: 540 FPGSKGEPGDILTFPG----MKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGG 595
Query: 185 AAFP---FPVYNGPMAGVPG 201
F P N + G+PG
Sbjct: 596 ITFKGERGPPGNPGLPGLPG 615
Score = 43.9 bits (102), Expect = 2e-04
Identities = 53/199 (26%), Positives = 62/199 (31%), Gaps = 16/199 (8%)
Query: 25 PSRTPPQTLKHLPS--GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDP 82
P + P K P G PGP G PG + G P P P +P
Sbjct: 1157 PGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNP 1216
Query: 83 QMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPL 142
+P P P G G GP + G G G P P P+ P
Sbjct: 1217 GLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPG 1276
Query: 143 L-----------YPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFP-FP 190
L P P +P L PP Q P P + P P FP
Sbjct: 1277 LPGNGGIKGEKGNPGQPGLP-GLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFP 1335
Query: 191 VYNGPMAGVPGPATVEHRP 209
GP +GVPG A E P
Sbjct: 1336 GMKGP-SGVPGSAGPEGEP 1353
Score = 42.4 bits (98), Expect = 5e-04
Identities = 39/110 (35%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 37 PSGEPG---PPFPAGMPG-GGSGSDTKG-GGSPATPEDPRSPAKPAAPEDPQ-MPAQPAL 90
P GEPG PP P G+PG G KG G P P P P P+ PQ +P
Sbjct: 1349 PEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLP-GPQGPQGLPGPTGP 1407
Query: 91 PQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPP---YAPPDP 137
P P R DGA G G G G G P P PP P
Sbjct: 1408 PGDPGRNGLPGFDGAGGRKGDPGLPGQPGTR--GLDGPPGPDGLQGPPGP 1455
Score = 41.6 bits (96), Expect = 8e-04
Identities = 54/195 (27%), Positives = 63/195 (32%), Gaps = 22/195 (11%)
Query: 21 PAAPPSRTPPQTLKHLPS-----GEPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSP 73
P P S+ P + P GE G P G+PG G G D G P P P
Sbjct: 538 PGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQD----GLPGLPGPKGEP 593
Query: 74 AKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPV-SKAAAGGAPHIGFVGEPPPY 132
+ P P LP LP + G G GPV K G A + G G P P
Sbjct: 594 GGITFKGERGPPGNPGLPGLPGNIGPMGPPG-FGPPGPVGEKGIQGVAGNPGQPGIPGPK 652
Query: 133 APPDPKAAPLLYPPFPQVP-----VVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAF 187
P P P P V L P P P + P + G
Sbjct: 653 GDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGI----PGIGL 708
Query: 188 PFPVYNGPMAGVPGP 202
P P G+PGP
Sbjct: 709 PGPPGPKGFPGIPGP 723
Score = 39.7 bits (91), Expect = 0.003
Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 37 PSGEPGPPFPAGMPG--GGSGSDTKGG--GSPATPEDPRSPAKPAAPEDPQMPAQPALPQ 92
P G PG P G+PG G G+ G G T + P P P P P +P
Sbjct: 94 PPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPG 153
Query: 93 LPRRPRTL---DEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFP 148
+ P ++ G G G G P G G P P PP P L+ PP P
Sbjct: 154 MKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLP--GPTGIPGPIGPPGPPG--LMGPPGP 208
Score = 37.0 bits (84), Expect = 0.020
Identities = 50/175 (28%), Positives = 58/175 (33%), Gaps = 50/175 (28%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR 96
P G+ G P P G P G +G D G P+ P P P P LP +
Sbjct: 773 PKGDRGFPGPPG-PPGRTGLDGLPG--------PKGDVGPNGQPGPMGP--PGLPGI--- 818
Query: 97 PRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQP 156
G G GP G P G +G+P + P K P PP VP
Sbjct: 819 -------GVQGPPGP------PGIP--GPIGQPGLHGIPGEKGDP--GPPGLDVP----- 856
Query: 157 APSALFPPPAQLYPAAPTPPALFSPPAGAAFP-------FPVYNGPMA--GVPGP 202
PP + P P P PP P FP G M G PGP
Sbjct: 857 -----GPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGP 906
Score = 32.0 bits (71), Expect = 0.65
Identities = 39/149 (26%), Positives = 48/149 (32%), Gaps = 16/149 (10%)
Query: 39 GEPGPPFPAGMPG--GGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQL--- 93
G GPP P G+PG G GS + P +P P P +P +P
Sbjct: 141 GLQGPPGPPGIPGMKGEPGSIIMS----SLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGP 196
Query: 94 PRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVV 153
P P + G G GP G GE PP P + + V
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQ--ISEQKRPIDVE 254
Query: 154 LQPAPSALFPPPAQLYPAAPTPPALFSPP 182
Q L P P P PP + PP
Sbjct: 255 FQKGDQGL---PGDRGP--PGPPGIRGPP 278
Score = 30.0 bits (66), Expect = 2.5
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 25 PSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDP--RSPAKPAAPEDP 82
P PQ L P+G PG P G+PG K G P P P R P P+
Sbjct: 1393 PGPQGPQGLPG-PTGPPGDPGRNGLPGFDGAGGRK--GDPGLPGQPGTRGLDGPPGPDGL 1449
Query: 83 QMPAQP 88
Q P P
Sbjct: 1450 QGPPGP 1455
Score = 28.9 bits (63), Expect = 5.5
Identities = 35/140 (25%), Positives = 42/140 (30%), Gaps = 36/140 (25%)
Query: 101 DEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKA-----------------APLL 143
D G GE G + G H G G P P PP P+ P
Sbjct: 39 DCSGIKGEKG--ERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPG 96
Query: 144 YPPFPQVPVV-----------LQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVY 192
P FP P + Q P + +P +P P L PP P
Sbjct: 97 LPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIP---- 152
Query: 193 NGPMAGVPGPATVEHRPLPK 212
M G PG + P PK
Sbjct: 153 --GMKGEPGSIIMSSLPGPK 170
Score = 28.5 bits (62), Expect = 7.2
Identities = 24/85 (28%), Positives = 28/85 (32%), Gaps = 12/85 (14%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR 96
P G PG P P G+ G + G P P P P P LP P+
Sbjct: 169 PKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGP-----------PGPPGLPG-PKG 216
Query: 97 PRTLDEDGAAGEAGPVSKAAAGGAP 121
L+ G GE G G P
Sbjct: 217 NMGLNFQGPKGEKGEQGLQGPPGPP 241
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 64.3 bits (155), Expect = 1e-10
Identities = 68/204 (33%), Positives = 80/204 (39%), Gaps = 30/204 (14%)
Query: 20 LPAAPPS--RTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPA 77
LPA PP R PP + LP P PP P +P GG P P P PA
Sbjct: 223 LPAGPPGVKRPPPPLMNGLP---PRPPLPESLP------PPPPGGLPLPPMPPTGPAPSG 273
Query: 78 APEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGP---VSKAAAGGAPHIGFVGEPP---- 130
P PQ+P P P + P + A+G P V A G P V P
Sbjct: 274 PPGPPQLP--PPAPGV-HPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVH 330
Query: 131 PYAPPDPKAAPLLYPPFPQV----PVVLQPAPSALFPPPAQLYPAA----PTPPALFSPP 182
P AP AP ++PP P V P V PAP PP A ++P A P PA+
Sbjct: 331 PPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQA 390
Query: 183 AGAAFPFPVYNGPMAGV-PGPATV 205
G P P + GV P P V
Sbjct: 391 PGVHPPAPGMHPQAPGVHPQPPGV 414
Score = 60.5 bits (145), Expect = 2e-09
Identities = 48/149 (32%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Query: 67 PEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFV 126
P P PA P + P P LP P P +L G P P G
Sbjct: 218 PAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPM-------PPTGPA 270
Query: 127 GEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPT--PPA--LFSPP 182
PP P P AP ++PP P V+ P S + PP ++P AP PPA + P
Sbjct: 271 PSGPPGPPQLPPPAPGVHPPAP----VVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPT 326
Query: 183 AGAAFPFPVYNGPMAGVPGPATVEHRPLP 211
+G P P + P GV PA H P P
Sbjct: 327 SGVHPPAPGVHPPAPGVHPPAPGVHPPAP 355
Score = 47.8 bits (112), Expect = 1e-05
Identities = 61/203 (30%), Positives = 72/203 (35%), Gaps = 38/203 (18%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPG--PPFP-AGMPGGGSGSDTKGGGSPATPEDPRSPAK 75
P P+ PP PPQ LP PG PP P P G G PA P +P
Sbjct: 269 PAPSGPPG--PPQ----LPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGV 322
Query: 76 PAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPP----- 130
PA P P G A V A G P V PP
Sbjct: 323 HPPTSGVHPPAPGVHPPAP---------GVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVH 373
Query: 131 PYAPPDPKAAPLLYPPFPQVPVVLQPAPS------ALFPPPAQLYPAA----PTPPALFS 180
P AP AAP ++ PQ P V PAP + P P ++P+A P PP +
Sbjct: 374 PQAPGVHPAAPAVH---PQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHP 430
Query: 181 PPAGAAFPFPVYNGPMAGVPGPA 203
G P P+ PM P P+
Sbjct: 431 SNPGVHPPTPM--PPMLRPPLPS 451
Score = 40.4 bits (93), Expect = 0.002
Identities = 43/153 (28%), Positives = 56/153 (36%), Gaps = 12/153 (7%)
Query: 25 PSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQM 84
P PP + H P+ PP P P G P P P+ P+ P +
Sbjct: 320 PGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGV 379
Query: 85 -PAQPAL-PQLPR-RPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAP 141
PA PA+ PQ P P A P AP G +PP P +P
Sbjct: 380 HPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAP--GVHPQPPGVHPSNPG--- 434
Query: 142 LLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPT 174
++PP P P++ P PS P + P PT
Sbjct: 435 -VHPPTPMPPMLRPPLPS---EGPGNIPPPPPT 463
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 63.5 bits (153), Expect = 2e-10
Identities = 60/199 (30%), Positives = 80/199 (40%), Gaps = 32/199 (16%)
Query: 19 PLPAA---PPSRTPPQTLKHLPSGEPGPPFPAGM--PGGGSGSD---TKGGGSPATPEDP 70
P P+A PP+ P +++ P PA P G G ++ S ATP
Sbjct: 192 PAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSS 251
Query: 71 RSPAKPAAPEDPQMPAQPALP-----QLPRRPR-TLDEDGAAGEAGPVSKAAAGGAPHIG 124
+ + P+A P+ PA P+ P Q R P+ T AA GP+S + G
Sbjct: 252 PARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSG 311
Query: 125 FVGEPPPYAPPDPKAAPL---------------LYPPFPQVPVVLQPAPSALFPPPAQLY 169
P P PPD A PL L PP P P LQ PS PP+Q
Sbjct: 312 TKARPVP--PPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAP 369
Query: 170 PAAPTPPALFSPPAGAAFP 188
P+ TPP + +PP+ P
Sbjct: 370 PSMTTPP-MQAPPSLQTIP 387
Score = 63.5 bits (153), Expect = 2e-10
Identities = 70/220 (31%), Positives = 87/220 (39%), Gaps = 30/220 (13%)
Query: 5 SPICKQLREMLERWPLPAAPPSRTPPQTL-----KHLPSGEPGPPFPAGMPGGGSGSDTK 59
+P+ + LE A P +TPP +L ++LPS P P A P +T
Sbjct: 502 APLSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETP 561
Query: 60 GGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGG 119
+P + P SP PE P A P P+ P L G P A
Sbjct: 562 PCPAPCPLQAPPSPLTTPPPETPSSIATPP----PQAPPALASPPLQGLPSPPLSPLATP 617
Query: 120 APHI-GFVGEPPPYAPPDPKAAPLLYP---PFPQVPVVL---------QPAPS----ALF 162
P + PP APP P A+P L P P PQ P L P PS A F
Sbjct: 618 PPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPF 677
Query: 163 PPPAQLYPAAP--TPPALFSPPAGAAFPFPVYNGPMAGVP 200
PPA P +P TPP+ +PP+ AA P V P A P
Sbjct: 678 SPPAS-PPVSPSATPPSQ-APPSLAAPPLQVPPSPPASPP 715
Score = 58.5 bits (140), Expect = 6e-09
Identities = 69/230 (30%), Positives = 86/230 (37%), Gaps = 53/230 (23%)
Query: 19 PLPAAPPS-RTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPA 77
P P APP+ TPP L+ LPS P FP P S S + P+ P A P
Sbjct: 784 PPPQAPPALATPP--LQALPS--PPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPL 839
Query: 78 APEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGP-VSKAAAGGAPHIGFVGEPPPYAPPD 136
P PA P L Q PRRP T D + +GP ++ A A G P PP +P
Sbjct: 840 LQVPPSPPASPTL-QAPRRPPTPGPDTSV--SGPRLTLALAPGPP------PPPSRSPSS 890
Query: 137 PKAAPLL----------------YPPFPQVPVVLQPAPSALFPPPAQLYPAA----PTPP 176
+ P L Y P+ P P A A +PAA P PP
Sbjct: 891 TLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAEL---AACHPAAWSRGPAPP 947
Query: 177 ALFSPPAGAAFPFP-------------VY--NGPMAGVPGPATVEHRPLP 211
F GA P+P +Y GP + P P ++ P P
Sbjct: 948 LAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSP 997
Score = 57.8 bits (138), Expect = 1e-08
Identities = 61/200 (30%), Positives = 70/200 (35%), Gaps = 25/200 (12%)
Query: 15 LERWPLPAAPPSRTPPQTLKHLPSGEPGP---PFPAGMPGGGSGSDTKGGGSPATPEDPR 71
LE P PA P + PP L P P P P P S P P
Sbjct: 558 LETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALAS---------PPLQGLPS 608
Query: 72 SPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPP 131
P P A PQ P ALP L P + A P +A A H+ PP
Sbjct: 609 PPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPP 668
Query: 132 YAPPDPKAAPLLYPPFPQVPVVLQP---APSALFPPPAQLYPAAPTPPALF--------S 180
P P AP P P V P AP +L PP Q+ P+ P P + +
Sbjct: 669 --PSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQA 726
Query: 181 PPAGAAFPFPVYNGPMAGVP 200
PP AA P V P A P
Sbjct: 727 PPPLAAPPLQVPPSPPASPP 746
Score = 55.1 bits (131), Expect = 7e-08
Identities = 55/190 (28%), Positives = 69/190 (36%), Gaps = 20/190 (10%)
Query: 21 PAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPA-KPAAP 79
P +PP +PP P P P P+ P + P P SP P+A
Sbjct: 664 PFSPPP-SPPVQAPFSPPASP-PVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSAT 721
Query: 80 EDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIG-FVGEPPPYAPPDPK 138
PQ P A P L P + A P +A P + + PP PP P
Sbjct: 722 PPPQAPPPLAAPPLQVPP--------SPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPP 773
Query: 139 AA----PLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFP----FP 190
A+ PL PP P + P AL PPA AP P+ P + A P P
Sbjct: 774 ASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPP 833
Query: 191 VYNGPMAGVP 200
V P+ VP
Sbjct: 834 VLAAPLLQVP 843
Score = 53.5 bits (127), Expect = 2e-07
Identities = 58/210 (27%), Positives = 71/210 (33%), Gaps = 27/210 (12%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAA 78
P AAPP + PP P P P P + PA+P P SP+
Sbjct: 697 PSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASP--PMSPSATPP 754
Query: 79 PEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGG------APHIGFVGEPP-- 130
P P + A P L P P +L A A A +P F G+ P
Sbjct: 755 PRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFS 814
Query: 131 --------PYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPP 182
P A P P+A P+L P QVP P+P A A P P P S P
Sbjct: 815 PSASLPMSPLATPPPQAPPVLAAPLLQVP----PSPPASPTLQAPRRPPTPGPDTSVSGP 870
Query: 183 -----AGAAFPFPVYNGPMAGVPGPATVEH 207
P P P + + GP H
Sbjct: 871 RLTLALAPGPPPPPSRSPSSTLSGPDLAGH 900
Score = 52.4 bits (124), Expect = 5e-07
Identities = 60/199 (30%), Positives = 72/199 (36%), Gaps = 41/199 (20%)
Query: 21 PAAPPSRTPPQTLK-HLP----SGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAK 75
P A PS P L HL S P PP A PA+P P
Sbjct: 644 PLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPF------------SPPASP-----PVS 686
Query: 76 PAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAG-GAPHIGFVGEPPPYAP 134
P+A Q P A P L P + A P +A AP + + PP P
Sbjct: 687 PSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPL----QVPPSPP 742
Query: 135 PDPKAAPLLYPPFPQVPVVL-------QPAPSALFP------PPAQLYPAAPTPPALFSP 181
P +P PP P+VP +L P+P A P PP Q PA TPP P
Sbjct: 743 ASPPMSPSATPP-PRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALP 801
Query: 182 PAGAAFPFPVYNGPMAGVP 200
A+FP P A +P
Sbjct: 802 SPPASFPGQAPFSPSASLP 820
Score = 43.9 bits (102), Expect = 2e-04
Identities = 50/170 (29%), Positives = 68/170 (40%), Gaps = 26/170 (15%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSP-ATPEDPRSPAKPA 77
P A PS+ P+ L+ L + PP P G S SP ATP + A+P
Sbjct: 263 PRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSS-----SPLATPSPSGTKARPV 317
Query: 78 APEDPQMPAQPA-LPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPD 136
P D PA LP P L P++ + P + + PP A P
Sbjct: 318 PPPDNAATPLPATLPPSPPLATPL----------PLAPPSPSAPPSLQTLPSPP--ATPP 365
Query: 137 PKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAA 186
+A P + P Q P PS PP Q+ P + T P+L +PP+ A
Sbjct: 366 SQAPPSMTTPPMQAP------PSLQTIPPIQV-PHSLTSPSLQAPPSPLA 408
Score = 39.3 bits (90), Expect = 0.004
Identities = 63/253 (24%), Positives = 84/253 (33%), Gaps = 76/253 (30%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPF---------------------PAGMPGG----- 52
PLP APPS + P +L+ LPS PP P +P
Sbjct: 340 PLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPS 399
Query: 53 ----------GSGSDTKGGGSPA--------------TPEDPRSPAKPAA--PEDPQMPA 86
S T GSP T SP++PA+ P+ P + A
Sbjct: 400 LQAPPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQA 459
Query: 87 QPALPQLPRRPRTLDEDGAAGEAGPVS----KAAAGGAPHIGFVGEPPPYAPPDPKAAPL 142
+LP P +L + + P++ +A + A H P AP P
Sbjct: 460 PLSLPASPPLQTSLSP-AVSPLSSPLTIHPLQALSSLASH-------SPQAPLSSLIMPP 511
Query: 143 LYPPFPQVPVVLQPAPSA-----------LFPPPAQLYPAAPTPPALFSPPAGAAFPFPV 191
L P LQ P++ L PPP Q A T P L +PP A P
Sbjct: 512 LETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQA 571
Query: 192 YNGPMAGVPGPAT 204
P+ P P T
Sbjct: 572 PPSPLT-TPPPET 583
Score = 38.9 bits (89), Expect = 0.005
Identities = 45/170 (26%), Positives = 64/170 (37%), Gaps = 21/170 (12%)
Query: 53 GSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMP--AQPALPQLPRRPRTLDEDGAAGEAG 110
G+ DT G +P TP + AA + +P A A P+ P A+ +
Sbjct: 159 GARRDTSGP-TPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHST 217
Query: 111 PVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYP 170
AA P G + P A PL P + PSA P A +P
Sbjct: 218 TEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPA--------RSGPSARGTPRAPAHP 269
Query: 171 AAPTP-------PALFSPPAGAAFPF--PVYNGPMAGVPGPATVEHRPLP 211
+ P P P +PP A P P+ + P+A P P+ + RP+P
Sbjct: 270 SQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLA-TPSPSGTKARPVP 318
Score = 36.6 bits (83), Expect = 0.026
Identities = 52/204 (25%), Positives = 73/204 (35%), Gaps = 37/204 (18%)
Query: 20 LPAAPPSRT----------------PPQTLKHLPSGEPGPPFPAG-MPGGGSGSDTKGGG 62
LPA+PP +T P Q L L S P P + MP +T+
Sbjct: 463 LPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSSLIMPP----LETQSSL 518
Query: 63 SPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPH 122
+P + + P PA+ P + P+L P + + E P AP
Sbjct: 519 APPSLQTP-----PASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAP- 572
Query: 123 IGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPP--AQL-YPAAPTPPALF 179
P P P P+ + P PQ P L P P P + L P PP L
Sbjct: 573 ------PSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLA 626
Query: 180 SPPAGAAFPFPVYNGPMAGVPGPA 203
PP A P P + P++ + P+
Sbjct: 627 LPPLQAP-PSPPASPPLSPLATPS 649
Score = 36.2 bits (82), Expect = 0.034
Identities = 53/189 (28%), Positives = 66/189 (34%), Gaps = 19/189 (10%)
Query: 5 SPICKQLREMLERWPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGG-SGSDTKGGGS 63
SP + R P P S + P+ L G P P P+ P SG D G S
Sbjct: 845 SPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPP--PSRSPSSTLSGPDLAGHSS 902
Query: 64 PATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHI 123
AT + PE + P +L AA GP A GAP
Sbjct: 903 SATSTPEELRGYDSGPEGGAAASPPPDAELAAC------HPAAWSRGPAPPLAFRGAP-- 954
Query: 124 GFVGEPPPYAP-PDPKAAPLLYPPF-PQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSP 181
G P P+ P P +A L + + P PAP AL P P+ P A
Sbjct: 955 ---GAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPS---PGTSGGKAAAGA 1008
Query: 182 PAGAAFPFP 190
AGA+ P
Sbjct: 1009 GAGASSRSP 1017
Score = 30.4 bits (67), Expect = 1.9
Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Query: 18 WPLPAAPPSRTPPQTLKHLPSGE-----PGPPFPAGMPGGGSGSDTKGGGSPATPEDPRS 72
WP P S T+ E PG P PG G G G+ A+ RS
Sbjct: 960 WPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGAS---SRS 1016
Query: 73 PAKPAAPEDPQMPAQPALPQ--LPRRPRTLDEDGAAGEAGPVSKAAAGG 119
P + E P Q ++ Q L R +GAAG +G A GG
Sbjct: 1017 PKQARLGELPLGALQASVVQHLLSRTLLLAAAEGAAGGSGGGPGGAEGG 1065
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 63.5 bits (153), Expect = 2e-10
Identities = 68/222 (30%), Positives = 82/222 (36%), Gaps = 49/222 (22%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGP--------PFPAGMPGGGSGSDTKGGGSPATPEDP 70
P+PAA P+ P+ GP P P PG G G G G PA P
Sbjct: 139 PVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPG---PGPGKPAGPGAA 195
Query: 71 RSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGA-----PHIGF 125
++ AA + A PA+ + P L P+ K AA G P +G
Sbjct: 196 QTLNGSAALLNSHHAAAPAVSLVNNGPAAL---------LPLPKPAAPGTVIQTPPFVGA 246
Query: 126 VGEPPPYAPPDP----KAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSP 181
P P AP P AAP PP P PAP+ L PP +PA P A P
Sbjct: 247 AAPPAPAAPSPPAAPAPAAPAAAPPPP------PPAPATLARPPG--HPAGPPTAAPAVP 298
Query: 182 PAGAA----------FPFPVYNGP--MAGVPGPATVEHRPLP 211
P AA P P GP ++G PGP P P
Sbjct: 299 PPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAP 340
Score = 61.6 bits (148), Expect = 8e-10
Identities = 71/223 (31%), Positives = 80/223 (35%), Gaps = 39/223 (17%)
Query: 21 PAAPPSRTPPQTLKHLPSGEPGPPFPAGM--PGGGSGSDTKGGGSPATPEDPRSPAKPAA 78
PA P + P P PP PAG PGGG G G SP P P PA PAA
Sbjct: 67 PAGAAGAGPAAPAEGAPGAAPEPP-PAGRARPGGG-GPQRPGPPSPRRPLVPAGPAPPAA 124
Query: 79 PEDP----------QMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGE 128
P +PA A+ P P AG A ++A G P G
Sbjct: 125 KLRPPPEGSAGSCAPVPAAAAVAAGP-EPAPAGPAKPAGPAALAARAGPGPGPGPGPGPG 183
Query: 129 PPPYAPPDPKAAPLL----------YPPFPQVPVVLQPAPSALFPPPAQLYP-------- 170
P P P P AA L + P V +V P+AL P P P
Sbjct: 184 PGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLV-NNGPAALLPLPKPAAPGTVIQTPP 242
Query: 171 ----AAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRP 209
AAP PA SPPA A P P P PAT+ P
Sbjct: 243 FVGAAAPPAPAAPSPPAAPA-PAAPAAAPPPPPPAPATLARPP 284
Score = 51.6 bits (122), Expect = 8e-07
Identities = 58/191 (30%), Positives = 72/191 (37%), Gaps = 36/191 (18%)
Query: 19 PLPAAPPS--RTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKP 76
P PAAP + +TPP G PP PA + + +P P P +PA
Sbjct: 229 PKPAAPGTVIQTPPFV------GAAAPPAPAAPSPPAAPAPAAPAAAPPPP--PPAPATL 280
Query: 77 AAPEDPQMPAQP--ALPQLPRRPRTLDEDGAAGEAGPVSKAAAGG--------------- 119
A P P PA P A P +P P ++G + A P AAGG
Sbjct: 281 ARP--PGHPAGPPTAAPAVP--PPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAA 336
Query: 120 APHIGFVGEPPPY----APPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAP-T 174
AP G E P APP + P +V+ P P PA + P AP T
Sbjct: 337 APAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGT 396
Query: 175 PPALFSPPAGA 185
P L AGA
Sbjct: 397 PTGLPKGAAGA 407
Score = 40.0 bits (92), Expect = 0.002
Identities = 50/180 (27%), Positives = 57/180 (31%), Gaps = 27/180 (15%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPF-------PAGMPGGGSG------SDTKGG---- 61
P A PP P TL P GPP PA GGS + GG
Sbjct: 266 PAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGV 325
Query: 62 -GSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGP--VSKAAAG 118
G P +PA E P+ Q A P +TL G A A + G
Sbjct: 326 SGQPGPGAAAAAPAPGVKAESPKRVVQAA----PPAAQTLAASGPASTAASMVIGPTMQG 381
Query: 119 GAPHIGFVGEPPPYAPPD-PK-AAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPP 176
P V P P P PK AA + + P A P L P P PP
Sbjct: 382 ALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTV-LAPRLPQPP 440
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 61.6 bits (148), Expect = 8e-10
Identities = 46/127 (36%), Positives = 52/127 (40%), Gaps = 16/127 (12%)
Query: 37 PSGEPGPPFPAGMPG--------GGSGSDTKG-GGSPATPEDPRSPAKPAAPEDPQMPAQ 87
P G PGPP P G+PG G + SD G G P P P P P P P +
Sbjct: 901 PRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGR 960
Query: 88 PALPQLPRRPRTLDEDGAAGEAGPVSKAA---AGGAPHIGFVGEPPPYAPPDPKAAPLLY 144
P + +L E GA G G SK A AG G G P P PP P P
Sbjct: 961 EGPPGRTGQKGSLGEAGAPGHKG--SKGAPGPAGARGESGLAGAPGPAGPPGPPGPP--G 1016
Query: 145 PPFPQVP 151
PP P +P
Sbjct: 1017 PPGPGLP 1023
Score = 58.9 bits (141), Expect = 5e-09
Identities = 58/195 (29%), Positives = 72/195 (36%), Gaps = 12/195 (6%)
Query: 37 PSGEPGPPFPAGMPGGGSG--SDTKGGGSPATPEDPRSPAKPAAPED---PQMPAQPALP 91
P G PGPP P G P S +++ G P P + P A + P P Q
Sbjct: 1256 PPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFD 1315
Query: 92 QLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGE--PPPYAPPDPKAAPLLYPPFPQ 149
L E G G+AG + G GF G P P PP P+ P + P +
Sbjct: 1316 FLQLEAEMKGEKGDRGDAGQKGERGEPGGG--GFFGSSLPGPPGPPGPRGYPGIPGPKGE 1373
Query: 150 VPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRP 209
+ QP P PP Y PP PP +FP P + VPGP P
Sbjct: 1374 -SIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGP--HRQTISVPGPPGPPGPP 1430
Query: 210 LPKDYMMESVLVTLF 224
P M S V L+
Sbjct: 1431 GPPGTMGASSGVRLW 1445
Score = 57.8 bits (138), Expect = 1e-08
Identities = 63/227 (27%), Positives = 76/227 (33%), Gaps = 62/227 (27%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGG----------------G 62
P PA PP P G PGPP P G+P G + GG G
Sbjct: 1003 PGPAGPPG----------PPGPPGPPGP-GLPAGFDDMEGSGGPFWSTARSADGPQGPPG 1051
Query: 63 SPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPH 122
P DP P P A + P P LP R G G+ G + G
Sbjct: 1052 LPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDG 1111
Query: 123 IGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPS-----ALFPPPA----------Q 167
+G G P P PP P++Y V+ P P A FP PA +
Sbjct: 1112 VGQPGLPGPPGPP----GPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGE 1167
Query: 168 LYPAAP-----TPPALFSPPAGAAFPF-------PVYNGPMAGVPGP 202
P P ++FSP GA P P + GP PGP
Sbjct: 1168 RGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGP----PGP 1210
Score = 53.9 bits (128), Expect = 2e-07
Identities = 54/194 (27%), Positives = 62/194 (31%), Gaps = 30/194 (15%)
Query: 39 GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR-- 96
G PGPP AG PG G P +P P PA P P P P R
Sbjct: 761 GVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDG 820
Query: 97 -PRTLDEDGAAGEAGP---------VSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPP 146
P EDG G+ GP V G P +G G P P PP P +
Sbjct: 821 EPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDK 880
Query: 147 FPQVPV----------VLQPAPSALFPPPAQLYPAAPTPPALF-----SPPAGAAFP-FP 190
+ + L+ PP P P P F P A P P
Sbjct: 881 LTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVP 940
Query: 191 VYNGP--MAGVPGP 202
GP G+PGP
Sbjct: 941 GREGPPGFPGLPGP 954
Score = 39.3 bits (90), Expect = 0.004
Identities = 46/176 (26%), Positives = 55/176 (31%), Gaps = 31/176 (17%)
Query: 21 PAAPPSRTPPQTLKHLPSGEPGPPFPAGM----------PGGGSGSDTKGGGSPATPEDP 70
P P ++ PP GE GPP P G G D G +P
Sbjct: 1285 PGLPGNQGPPGPKG--AKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEP 1342
Query: 71 RSPA--KPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGE 128
+ P P P P +P P+ G G GP G P IG+ G
Sbjct: 1343 GGGGFFGSSLPGPPGPPGPRGYPGIPG-PKGESIRGQPGPPGPQ------GPPGIGYEGR 1395
Query: 129 PPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAG 184
P PP P P P P + P P P P P P PP +G
Sbjct: 1396 QGPPGPPGPPGPPSF--PGPHRQTISVPGP----PGP----PGPPGPPGTMGASSG 1441
Score = 37.7 bits (86), Expect = 0.012
Identities = 59/229 (25%), Positives = 71/229 (31%), Gaps = 53/229 (23%)
Query: 20 LPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPG--------GGSGS----------DTKGG 61
LP P PP G PG P P G PG G GS +KG
Sbjct: 936 LPGVPGREGPP--------GFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGA 987
Query: 62 GSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDE-DGAAGEAGPVSKAAAG-- 118
PA A P P P P P P P D+ +G+ G +++A G
Sbjct: 988 PGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQ 1047
Query: 119 GAPHI-GFVGEPPPYAPPDPKAAPLL--YPPFPQVP-------------------VVLQP 156
G P + G G+P P K P FP +P P
Sbjct: 1048 GPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDP 1107
Query: 157 APSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNG--PMAGVPGPA 203
+ P P P P S G+ P G AG PGPA
Sbjct: 1108 GKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPA 1156
Score = 33.9 bits (76), Expect = 0.17
Identities = 46/186 (24%), Positives = 57/186 (30%), Gaps = 13/186 (6%)
Query: 39 GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPR 98
G+PG P P G PG + G + P P P P
Sbjct: 1113 GQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPG 1172
Query: 99 TLDEDGAAG-----EAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVV 153
E G G + G + A G GF G P PY P K + +P P P +
Sbjct: 1173 PKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYK-GEIGFPGRPGRPGM 1231
Query: 154 LQPAPSALFPPPAQL------YPAAPTPPALFSPPAGAAFPFPVY-NGPMAGVPGPATVE 206
P A L P P PP PP + V+ G PG +
Sbjct: 1232 NGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQ 1291
Query: 207 HRPLPK 212
P PK
Sbjct: 1292 GPPGPK 1297
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 19 PLPAAPPSRTPP--QTLKHL-PSGEPGPPFPAGMPGGGSG 55
P P PPS P QT+ P G PGPP P G G SG
Sbjct: 1402 PGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMGASSG 1441
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 61.6 bits (148), Expect = 8e-10
Identities = 46/127 (36%), Positives = 52/127 (40%), Gaps = 16/127 (12%)
Query: 37 PSGEPGPPFPAGMPG--------GGSGSDTKG-GGSPATPEDPRSPAKPAAPEDPQMPAQ 87
P G PGPP P G+PG G + SD G G P P P P P P P +
Sbjct: 486 PRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGR 545
Query: 88 PALPQLPRRPRTLDEDGAAGEAGPVSKAA---AGGAPHIGFVGEPPPYAPPDPKAAPLLY 144
P + +L E GA G G SK A AG G G P P PP P P
Sbjct: 546 EGPPGRTGQKGSLGEAGAPGHKG--SKGAPGPAGARGESGLAGAPGPAGPPGPPGPP--G 601
Query: 145 PPFPQVP 151
PP P +P
Sbjct: 602 PPGPGLP 608
Score = 58.9 bits (141), Expect = 5e-09
Identities = 58/195 (29%), Positives = 72/195 (36%), Gaps = 12/195 (6%)
Query: 37 PSGEPGPPFPAGMPGGGSG--SDTKGGGSPATPEDPRSPAKPAAPED---PQMPAQPALP 91
P G PGPP P G P S +++ G P P + P A + P P Q
Sbjct: 841 PPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFD 900
Query: 92 QLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGE--PPPYAPPDPKAAPLLYPPFPQ 149
L E G G+AG + G GF G P P PP P+ P + P +
Sbjct: 901 FLQLEAEMKGEKGDRGDAGQKGERGEPGGG--GFFGSSLPGPPGPPGPRGYPGIPGPKGE 958
Query: 150 VPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRP 209
+ QP P PP Y PP PP +FP P + VPGP P
Sbjct: 959 -SIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGP--HRQTISVPGPPGPPGPP 1015
Query: 210 LPKDYMMESVLVTLF 224
P M S V L+
Sbjct: 1016 GPPGTMGASSGVRLW 1030
Score = 57.8 bits (138), Expect = 1e-08
Identities = 63/227 (27%), Positives = 76/227 (33%), Gaps = 62/227 (27%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGG----------------G 62
P PA PP P G PGPP P G+P G + GG G
Sbjct: 588 PGPAGPPG----------PPGPPGPPGP-GLPAGFDDMEGSGGPFWSTARSADGPQGPPG 636
Query: 63 SPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPH 122
P DP P P A + P P LP R G G+ G + G
Sbjct: 637 LPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDG 696
Query: 123 IGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPS-----ALFPPPA----------Q 167
+G G P P PP P++Y V+ P P A FP PA +
Sbjct: 697 VGQPGLPGPPGPP----GPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGE 752
Query: 168 LYPAAP-----TPPALFSPPAGAAFPF-------PVYNGPMAGVPGP 202
P P ++FSP GA P P + GP PGP
Sbjct: 753 RGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGP----PGP 795
Score = 53.9 bits (128), Expect = 2e-07
Identities = 54/194 (27%), Positives = 62/194 (31%), Gaps = 30/194 (15%)
Query: 39 GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR-- 96
G PGPP AG PG G P +P P PA P P P P R
Sbjct: 346 GVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDG 405
Query: 97 -PRTLDEDGAAGEAGP---------VSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPP 146
P EDG G+ GP V G P +G G P P PP P +
Sbjct: 406 EPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDK 465
Query: 147 FPQVPV----------VLQPAPSALFPPPAQLYPAAPTPPALF-----SPPAGAAFP-FP 190
+ + L+ PP P P P F P A P P
Sbjct: 466 LTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVP 525
Query: 191 VYNGP--MAGVPGP 202
GP G+PGP
Sbjct: 526 GREGPPGFPGLPGP 539
Score = 39.3 bits (90), Expect = 0.004
Identities = 46/176 (26%), Positives = 55/176 (31%), Gaps = 31/176 (17%)
Query: 21 PAAPPSRTPPQTLKHLPSGEPGPPFPAGM----------PGGGSGSDTKGGGSPATPEDP 70
P P ++ PP GE GPP P G G D G +P
Sbjct: 870 PGLPGNQGPPGPKG--AKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEP 927
Query: 71 RSPA--KPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGE 128
+ P P P P +P P+ G G GP G P IG+ G
Sbjct: 928 GGGGFFGSSLPGPPGPPGPRGYPGIPG-PKGESIRGQPGPPGPQ------GPPGIGYEGR 980
Query: 129 PPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAG 184
P PP P P P P + P P P P P P PP +G
Sbjct: 981 QGPPGPPGPPGPPSF--PGPHRQTISVPGP----PGP----PGPPGPPGTMGASSG 1026
Score = 37.7 bits (86), Expect = 0.012
Identities = 59/229 (25%), Positives = 71/229 (31%), Gaps = 53/229 (23%)
Query: 20 LPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPG--------GGSGS----------DTKGG 61
LP P PP G PG P P G PG G GS +KG
Sbjct: 521 LPGVPGREGPP--------GFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGA 572
Query: 62 GSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDE-DGAAGEAGPVSKAAAG-- 118
PA A P P P P P P P D+ +G+ G +++A G
Sbjct: 573 PGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQ 632
Query: 119 GAPHI-GFVGEPPPYAPPDPKAAPLL--YPPFPQVP-------------------VVLQP 156
G P + G G+P P K P FP +P P
Sbjct: 633 GPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDP 692
Query: 157 APSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNG--PMAGVPGPA 203
+ P P P P S G+ P G AG PGPA
Sbjct: 693 GKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPA 741
Score = 33.9 bits (76), Expect = 0.17
Identities = 46/186 (24%), Positives = 57/186 (30%), Gaps = 13/186 (6%)
Query: 39 GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPR 98
G+PG P P G PG + G + P P P P
Sbjct: 698 GQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPG 757
Query: 99 TLDEDGAAG-----EAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVV 153
E G G + G + A G GF G P PY P K + +P P P +
Sbjct: 758 PKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYK-GEIGFPGRPGRPGM 816
Query: 154 LQPAPSALFPPPAQL------YPAAPTPPALFSPPAGAAFPFPVY-NGPMAGVPGPATVE 206
P A L P P PP PP + V+ G PG +
Sbjct: 817 NGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQ 876
Query: 207 HRPLPK 212
P PK
Sbjct: 877 GPPGPK 882
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 19 PLPAAPPSRTPP--QTLKHL-PSGEPGPPFPAGMPGGGSG 55
P P PPS P QT+ P G PGPP P G G SG
Sbjct: 987 PGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMGASSG 1026
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 61.6 bits (148), Expect = 8e-10
Identities = 46/127 (36%), Positives = 52/127 (40%), Gaps = 16/127 (12%)
Query: 37 PSGEPGPPFPAGMPG--------GGSGSDTKG-GGSPATPEDPRSPAKPAAPEDPQMPAQ 87
P G PGPP P G+PG G + SD G G P P P P P P P +
Sbjct: 666 PRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGR 725
Query: 88 PALPQLPRRPRTLDEDGAAGEAGPVSKAA---AGGAPHIGFVGEPPPYAPPDPKAAPLLY 144
P + +L E GA G G SK A AG G G P P PP P P
Sbjct: 726 EGPPGRTGQKGSLGEAGAPGHKG--SKGAPGPAGARGESGLAGAPGPAGPPGPPGPP--G 781
Query: 145 PPFPQVP 151
PP P +P
Sbjct: 782 PPGPGLP 788
Score = 58.9 bits (141), Expect = 5e-09
Identities = 58/195 (29%), Positives = 72/195 (36%), Gaps = 12/195 (6%)
Query: 37 PSGEPGPPFPAGMPGGGSG--SDTKGGGSPATPEDPRSPAKPAAPED---PQMPAQPALP 91
P G PGPP P G P S +++ G P P + P A + P P Q
Sbjct: 1021 PPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFD 1080
Query: 92 QLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGE--PPPYAPPDPKAAPLLYPPFPQ 149
L E G G+AG + G GF G P P PP P+ P + P +
Sbjct: 1081 FLQLEAEMKGEKGDRGDAGQKGERGEPGGG--GFFGSSLPGPPGPPGPRGYPGIPGPKGE 1138
Query: 150 VPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRP 209
+ QP P PP Y PP PP +FP P + VPGP P
Sbjct: 1139 -SIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGP--HRQTISVPGPPGPPGPP 1195
Query: 210 LPKDYMMESVLVTLF 224
P M S V L+
Sbjct: 1196 GPPGTMGASSGVRLW 1210
Score = 57.8 bits (138), Expect = 1e-08
Identities = 63/227 (27%), Positives = 76/227 (33%), Gaps = 62/227 (27%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGG----------------G 62
P PA PP P G PGPP P G+P G + GG G
Sbjct: 768 PGPAGPPG----------PPGPPGPPGP-GLPAGFDDMEGSGGPFWSTARSADGPQGPPG 816
Query: 63 SPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPH 122
P DP P P A + P P LP R G G+ G + G
Sbjct: 817 LPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDG 876
Query: 123 IGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPS-----ALFPPPA----------Q 167
+G G P P PP P++Y V+ P P A FP PA +
Sbjct: 877 VGQPGLPGPPGPP----GPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGE 932
Query: 168 LYPAAP-----TPPALFSPPAGAAFPF-------PVYNGPMAGVPGP 202
P P ++FSP GA P P + GP PGP
Sbjct: 933 RGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGP----PGP 975
Score = 53.9 bits (128), Expect = 2e-07
Identities = 54/194 (27%), Positives = 62/194 (31%), Gaps = 30/194 (15%)
Query: 39 GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR-- 96
G PGPP AG PG G P +P P PA P P P P R
Sbjct: 526 GVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDG 585
Query: 97 -PRTLDEDGAAGEAGP---------VSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPP 146
P EDG G+ GP V G P +G G P P PP P +
Sbjct: 586 EPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDK 645
Query: 147 FPQVPV----------VLQPAPSALFPPPAQLYPAAPTPPALF-----SPPAGAAFP-FP 190
+ + L+ PP P P P F P A P P
Sbjct: 646 LTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVP 705
Query: 191 VYNGP--MAGVPGP 202
GP G+PGP
Sbjct: 706 GREGPPGFPGLPGP 719
Score = 39.3 bits (90), Expect = 0.004
Identities = 46/176 (26%), Positives = 55/176 (31%), Gaps = 31/176 (17%)
Query: 21 PAAPPSRTPPQTLKHLPSGEPGPPFPAGM----------PGGGSGSDTKGGGSPATPEDP 70
P P ++ PP GE GPP P G G D G +P
Sbjct: 1050 PGLPGNQGPPGPKG--AKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEP 1107
Query: 71 RSPA--KPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGE 128
+ P P P P +P P+ G G GP G P IG+ G
Sbjct: 1108 GGGGFFGSSLPGPPGPPGPRGYPGIPG-PKGESIRGQPGPPGPQ------GPPGIGYEGR 1160
Query: 129 PPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAG 184
P PP P P P P + P P P P P P PP +G
Sbjct: 1161 QGPPGPPGPPGPPSF--PGPHRQTISVPGP----PGP----PGPPGPPGTMGASSG 1206
Score = 37.7 bits (86), Expect = 0.012
Identities = 59/229 (25%), Positives = 71/229 (31%), Gaps = 53/229 (23%)
Query: 20 LPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPG--------GGSGS----------DTKGG 61
LP P PP G PG P P G PG G GS +KG
Sbjct: 701 LPGVPGREGPP--------GFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGA 752
Query: 62 GSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDE-DGAAGEAGPVSKAAAG-- 118
PA A P P P P P P P D+ +G+ G +++A G
Sbjct: 753 PGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQ 812
Query: 119 GAPHI-GFVGEPPPYAPPDPKAAPLL--YPPFPQVP-------------------VVLQP 156
G P + G G+P P K P FP +P P
Sbjct: 813 GPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDP 872
Query: 157 APSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNG--PMAGVPGPA 203
+ P P P P S G+ P G AG PGPA
Sbjct: 873 GKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPA 921
Score = 33.9 bits (76), Expect = 0.17
Identities = 46/186 (24%), Positives = 57/186 (30%), Gaps = 13/186 (6%)
Query: 39 GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPR 98
G+PG P P G PG + G + P P P P
Sbjct: 878 GQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPG 937
Query: 99 TLDEDGAAG-----EAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVV 153
E G G + G + A G GF G P PY P K + +P P P +
Sbjct: 938 PKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYK-GEIGFPGRPGRPGM 996
Query: 154 LQPAPSALFPPPAQL------YPAAPTPPALFSPPAGAAFPFPVY-NGPMAGVPGPATVE 206
P A L P P PP PP + V+ G PG +
Sbjct: 997 NGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQ 1056
Query: 207 HRPLPK 212
P PK
Sbjct: 1057 GPPGPK 1062
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 19 PLPAAPPSRTPP--QTLKHL-PSGEPGPPFPAGMPGGGSG 55
P P PPS P QT+ P G PGPP P G G SG
Sbjct: 1167 PGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMGASSG 1206
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 61.2 bits (147), Expect = 1e-09
Identities = 53/172 (30%), Positives = 60/172 (34%), Gaps = 11/172 (6%)
Query: 38 SGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRP 97
+GEPG P G PG KG P+ P P P + P+ P P P
Sbjct: 1290 AGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPK--GSPGPVGFPGDP 1347
Query: 98 RTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAP-LLYPPFPQVPVVLQP 156
E G AG+ GP G P G G P P P P P PP P P Q
Sbjct: 1348 GPPGEPGPAGQDGPPGDKGDDGEP--GQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQG 1405
Query: 157 APSA-----LFPPPAQLYPAAPT-PPALFSPPAGAAFPFPVYNGPMAGVPGP 202
A L PP + P P P P P PV + G PGP
Sbjct: 1406 EKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGP 1457
Score = 55.8 bits (133), Expect = 4e-08
Identities = 55/191 (28%), Positives = 66/191 (34%), Gaps = 23/191 (12%)
Query: 37 PSGEPGPPFPAGM------PGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMP----A 86
P G PGPP P G+ PG + G P P PR P+ + PQ P
Sbjct: 1217 PRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIG 1276
Query: 87 QPALPQLPRRPRTLDEDGAAGEAGPV----SKAAAGGAPHIGFVGEPPPYAPP---DPKA 139
P P E G GE GP + G + G G P P PP PK
Sbjct: 1277 NPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKG 1336
Query: 140 A--PLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMA 197
+ P+ +P P P +P P+ PP P P P P
Sbjct: 1337 SPGPVGFPGDPGPPG--EPGPAGQDGPPGD--KGDDGEPGQTGSPGPTGEPGPSGPPGKR 1392
Query: 198 GVPGPATVEHR 208
G PGPA E R
Sbjct: 1393 GPPGPAGPEGR 1403
Score = 52.8 bits (125), Expect = 4e-07
Identities = 42/125 (33%), Positives = 46/125 (36%), Gaps = 7/125 (5%)
Query: 21 PAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPA-TPEDPRSPAKPAAP 79
P P T P + P G PGPP G+PG TKG PA P P P
Sbjct: 1001 PQGPTGETGPMGERGHP-GPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFP 1059
Query: 80 EDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDP-- 137
D +P L G AG G + AG A IG G P P PP P
Sbjct: 1060 GDRGLPGPVGALGLKGNEGPPGPPGPAGSPG--ERGPAGAAGPIGIPGRPGPQGPPGPAG 1117
Query: 138 -KAAP 141
K AP
Sbjct: 1118 EKGAP 1122
Score = 52.0 bits (123), Expect = 6e-07
Identities = 56/185 (30%), Positives = 62/185 (33%), Gaps = 33/185 (17%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQ---- 92
P GE GP G PG S GG PA P R P P P P P P
Sbjct: 917 PRGERGPRGITGKPGPKGNS---GGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDG 973
Query: 93 LPRRPRTLDEDGAAGEAGPVS-------KAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYP 145
LP P E G G+ GP + G +G G P P PP + P L
Sbjct: 974 LPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGL-- 1031
Query: 146 PFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPV-------YNGPMAG 198
+ P P+ L P PP L P P PV GP G
Sbjct: 1032 -AGKEGTKGDPGPAGL--------PGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGP-PG 1081
Query: 199 VPGPA 203
PGPA
Sbjct: 1082 PPGPA 1086
Score = 48.9 bits (115), Expect = 5e-06
Identities = 38/119 (31%), Positives = 45/119 (37%), Gaps = 14/119 (11%)
Query: 37 PSGEPGPPFPAGMPG--------GGSGS-DTKGGGSPATPEDPRSPAKPAAPEDPQ---- 83
P GEPGP G PG G +GS G P+ P R P PA PE Q
Sbjct: 1349 PPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKG 1408
Query: 84 MPAQPALPQLPRRPRTLDEDGAAGEAGPVS-KAAAGGAPHIGFVGEPPPYAPPDPKAAP 141
+ L P + + GA G+ GP + G G G P P PP P P
Sbjct: 1409 AKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPP 1467
Score = 46.6 bits (109), Expect = 3e-05
Identities = 55/190 (28%), Positives = 62/190 (32%), Gaps = 28/190 (14%)
Query: 19 PLPAAPPSRTPPQTLKHLPS--GEPGPPFPAGMPGGGSGSDTKGG-GSPATPEDPRSPAK 75
P P PP + LP G GP G PG + KGG G+P P PR
Sbjct: 855 PGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKP-GPRGQRG 913
Query: 76 PAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPP 135
P P + P G G+ GP K +GG G GE P P
Sbjct: 914 PTGPRGERGPR-----------------GITGKPGP--KGNSGGDGPAGPPGERGPNGPQ 954
Query: 136 DPKAAP-LLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSP--PAGAAFPFPVY 192
P P PP P L P Q P PP + P P G P
Sbjct: 955 GPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGER 1014
Query: 193 NGPMAGVPGP 202
P G PGP
Sbjct: 1015 GHP--GPPGP 1022
Score = 45.4 bits (106), Expect = 6e-05
Identities = 52/184 (28%), Positives = 64/184 (34%), Gaps = 14/184 (7%)
Query: 29 PPQTLKHLPSGEPGPPFPAGM--PGGGSGSD----TKGGGSPATPEDPRSPAKPAAPEDP 82
P QT P+GEPGP P G P G +G + KG A E P P P+
Sbjct: 1371 PGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQG- 1429
Query: 83 QMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHI-GFVGEPPPYAPP-DPKAA 140
P +P L P + E G G GP G P + G G+ P P
Sbjct: 1430 -APGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLI 1488
Query: 141 PLLYPPFPQVPVVLQ--PAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAG 198
L+ PP Q + P P P + P+ P PP P P G
Sbjct: 1489 GLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGP--IGPPGPPGLPGPPGPKGAKG 1546
Query: 199 VPGP 202
GP
Sbjct: 1547 SSGP 1550
Score = 43.9 bits (102), Expect = 2e-04
Identities = 63/221 (28%), Positives = 73/221 (33%), Gaps = 39/221 (17%)
Query: 19 PLPAAPPSRT-----PPQTLKHLPSGEPGPPFPAGMPG--------GGSGSDTKGG--GS 63
P P PP T P P GEPGPP G PG G G + G G
Sbjct: 690 PGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGK 749
Query: 64 PATPEDPRSPAKPAAPEDPQMPAQ-----PALPQLP---RRPRTL-DEDGAAGEAGPVSK 114
P P P + P P P + P PQ P PR + DG G G +
Sbjct: 750 PGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGE 809
Query: 115 AAAGGAP----HIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQ--- 167
G P +G G+ PP P+ P P+ P L PP +
Sbjct: 810 KGEDGFPGFKGDMGIKGDRGEIGPPGPRGED--GPEGPKGRGGPNGDPGPLGPPGEKGKL 867
Query: 168 LYPAAPTPPALFSPPAGAAFP-FPVYNGPMA-----GVPGP 202
P P P P FP FP NG G PGP
Sbjct: 868 GVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGP 908
Score = 42.7 bits (99), Expect = 4e-04
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPE-DPRSPAKPAAPEDPQMPAQPALPQLPR 95
PSG GPP P G+PG KG P P+ + P P P P QP Q R
Sbjct: 1523 PSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQPLPIQASR 1582
Query: 96 RPRTLD 101
R +D
Sbjct: 1583 TRRNID 1588
Score = 42.0 bits (97), Expect = 6e-04
Identities = 59/220 (26%), Positives = 68/220 (30%), Gaps = 42/220 (19%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATP------EDPRS 72
P PA P P P G PG P P G PG G P P + P
Sbjct: 1083 PGPAGSPGERGPAGAAG-PIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVG 1141
Query: 73 PAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPY 132
PA P P P + P G GE GP G +G+P P
Sbjct: 1142 LPGPAGPVGP--PGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGP-----IGQPGPS 1194
Query: 133 ---APPDPKAAPLLYP----------PFPQVPVVLQPAPSALFPP--------PAQLYPA 171
P P+ L+ P P PV LQ P PP Q+ P
Sbjct: 1195 GADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPG---PPGEKGETGDVGQMGPP 1251
Query: 172 APTPPALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRPLP 211
P P S GA P GP G+ P V + P
Sbjct: 1252 GPPGPRGPSGAPGADGP----QGPPGGIGNPGAVGEKGEP 1287
Score = 41.6 bits (96), Expect = 8e-04
Identities = 39/116 (33%), Positives = 45/116 (38%), Gaps = 21/116 (18%)
Query: 36 LPSGEPGPPFPAGMPG-GGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLP 94
L G PGP PAG+PG G+ T G P P P P A P P + LP
Sbjct: 466 LIEGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPG--TMLMLP 523
Query: 95 RRPRTLDEDGAAGEAGPV-----SKAAA----------GGAPHIGFVGEPPPYAPP 135
R G AG GP+ S+A A G A +G G P P PP
Sbjct: 524 FR---FGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPP 576
Score = 41.6 bits (96), Expect = 8e-04
Identities = 48/186 (25%), Positives = 55/186 (29%), Gaps = 34/186 (18%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR 96
P G G P P G PG G G P P + P PA P R
Sbjct: 563 PMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGK--------------PGR 608
Query: 97 PRTLDEDGA---AGEAGPVSKAAAGGAPHI----GFVGEPPPYAPPDP-----------K 138
DGA G+ GP G + G G+P P PP P +
Sbjct: 609 RGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGE 668
Query: 139 AAPLLYPPFPQVPVVLQP--APSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPM 196
P P P +L P P PP P P P P N
Sbjct: 669 VGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGA 728
Query: 197 AGVPGP 202
G+PGP
Sbjct: 729 QGLPGP 734
Score = 39.7 bits (91), Expect = 0.003
Identities = 40/129 (31%), Positives = 47/129 (36%), Gaps = 15/129 (11%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKG-GGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPR 95
P G PGP P G+PG S KG G P P + D +P PQ
Sbjct: 1457 PDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPG----PQGSS 1512
Query: 96 RPRTLDEDGAAGEAGPVSKAAAGGAP----HIGFVGEPPPYAPPDPKAAPLLYPPFPQVP 151
P+ E G G +GP+ G P G G P P P PP P P
Sbjct: 1513 GPK--GEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHP--GPPGPPGP 1568
Query: 152 --VVLQPAP 158
V+QP P
Sbjct: 1569 PGEVIQPLP 1577
Score = 38.9 bits (89), Expect = 0.005
Identities = 48/172 (27%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMP-AQPALPQLPR 95
P G PGP P G PG G + + P P PQ P QP
Sbjct: 1139 PVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADG 1198
Query: 96 RPRTLDEDGAAGEAGPVSKAAAGGAP-HIGFVGEP-PPYAPPDPKAAPLLYPPFPQVPVV 153
P + G G+ G G P +G G P PP + + PP P P
Sbjct: 1199 EPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRG 1258
Query: 154 LQPAPSALFP--PPAQLYPAAPTPPALFSPPAGAAFP-FPVYNGPMAGVPGP 202
AP A P PP + P P A P P GP PGP
Sbjct: 1259 PSGAPGADGPQGPPGGI--GNPGAVGEKGEPGEAGEPGLPGEGGP----PGP 1304
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 60.8 bits (146), Expect = 1e-09
Identities = 48/164 (29%), Positives = 64/164 (39%), Gaps = 14/164 (8%)
Query: 19 PLPAAPPSRTPPQ-TLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPA 77
P P PP++ P ++P P PP P P P+ S K
Sbjct: 806 PTPPVPPAKKQPAFPASYIPPSPPTPPVPVPPPTLPKQQSFCAKPPPSPLSPVPSVVKQI 865
Query: 78 APEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDP 137
A + P P PA+ P +P + A ++ P KA P + P P PP P
Sbjct: 866 ASQFPPPPTPPAMESQPLKPVPAN---VAPQSPPAVKAKPKWQP--SSIPVPSPDFPPPP 920
Query: 138 KAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSP 181
+ L++PP P PV P P PPP A+PTP SP
Sbjct: 921 PESSLVFPPPPPSPVPAPPPP----PPPT----ASPTPDKSGSP 956
Score = 56.2 bits (134), Expect = 3e-08
Identities = 62/225 (27%), Positives = 81/225 (36%), Gaps = 43/225 (19%)
Query: 19 PLPAAPPSRTPPQTLKHLPSG---EPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSP-- 73
P P S++ + P+G P PP P PG +P+ P+ P
Sbjct: 687 PTPPVMQSQSVKPQILVPPNGVVPPPPPPPPPPTPGSAMAQLKPAPCAPSLPQFSAPPPP 746
Query: 74 ------------AKPAAPEDPQMPAQPALPQLPRRPR-TLDEDGAAGEAGPVSKAAAGGA 120
A P P P +PA P PQ P +P T+ + PV AA
Sbjct: 747 LKIHQVQHITQVAPPTPPPPPPIPA-PLPPQAPPKPLVTIPAPTSTKTVAPVVTQAAPPT 805
Query: 121 PHIGFVGE------PPPYAPPDPKAAPLLYPPFPQVP----VVLQPAPSALFPPP----- 165
P P Y PP P P+ PP P +P +P PS L P P
Sbjct: 806 PTPPVPPAKKQPAFPASYIPPSPPTPPVPVPP-PTLPKQQSFCAKPPPSPLSPVPSVVKQ 864
Query: 166 -AQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRP 209
A +P PTPPA+ S P P P P + P V+ +P
Sbjct: 865 IASQFPPPPTPPAMESQPLK---PVPANVAPQS----PPAVKAKP 902
Score = 55.1 bits (131), Expect = 7e-08
Identities = 66/225 (29%), Positives = 79/225 (35%), Gaps = 40/225 (17%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPA-GMPGGGSGS------------DTKGGGSPA 65
PLP PP PP P P PP P+ P GS + S A
Sbjct: 627 PLPPPPPPPPPPPP----PPPPPPPPLPSQSAPSAGSAAPMFVKYSTITRLQNASQHSGA 682
Query: 66 TPEDPRSPAKPAAPEDPQM--PAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAA---GGA 120
+ P P + PQ+ P +P P P A + P A + A
Sbjct: 683 LFKPPTPPVMQSQSVKPQILVPPNGVVPPPPPPPPPPTPGSAMAQLKPAPCAPSLPQFSA 742
Query: 121 P----------HIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSA---LFPPPAQ 167
P HI V P P PP P APL P P P+V PAP++ + P Q
Sbjct: 743 PPPPLKIHQVQHITQVAPPTP-PPPPPIPAPLP-PQAPPKPLVTIPAPTSTKTVAPVVTQ 800
Query: 168 LYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRPLPK 212
P PTPP PPA FP P + P V LPK
Sbjct: 801 AAPPTPTPPV---PPAKKQPAFPASYIPPSPPTPPVPVPPPTLPK 842
Score = 53.9 bits (128), Expect = 2e-07
Identities = 62/223 (27%), Positives = 82/223 (36%), Gaps = 48/223 (21%)
Query: 21 PAAPPSRTPPQTLK-----HL-----PSGEPGPPFPAGMPGGG---------SGSDTKG- 60
P+ P PP LK H+ P+ P PP PA +P + + TK
Sbjct: 735 PSLPQFSAPPPPLKIHQVQHITQVAPPTPPPPPPIPAPLPPQAPPKPLVTIPAPTSTKTV 794
Query: 61 -----GGSPATPEDPRSPAK--PAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVS 113
+P TP P PAK PA P +P P P +P P TL + + P S
Sbjct: 795 APVVTQAAPPTPTPPVPPAKKQPAFPAS-YIPPSPPTPPVPVPPPTLPKQQSFCAKPPPS 853
Query: 114 KAAAGGAPHIGFVGE-PPPYAPPDPKAAPLLYPPF---PQVPVVLQ----------PAPS 159
+ + + PPP PP ++ PL P PQ P ++ P PS
Sbjct: 854 PLSPVPSVVKQIASQFPPPPTPPAMESQPLKPVPANVAPQSPPAVKAKPKWQPSSIPVPS 913
Query: 160 ALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGP 202
FPPP P +F PP + P P P P P
Sbjct: 914 PDFPPPP------PESSLVFPPPPPSPVPAPPPPPPPTASPTP 950
Score = 49.7 bits (117), Expect = 3e-06
Identities = 54/219 (24%), Positives = 72/219 (32%), Gaps = 39/219 (17%)
Query: 9 KQLREMLERWPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPE 68
K E + R PP P+ + + +P PP P P P P
Sbjct: 592 KARMESMNRPYTSLVPPLSPQPKIVTPYTASQPSPPLPPPPP------------PPPPPP 639
Query: 69 DPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGG--------- 119
P P P P A A P + A+ +G + K
Sbjct: 640 PPPPPPPPPLPSQSAPSAGSAAPMFVKYSTITRLQNASQHSGALFKPPTPPVMQSQSVKP 699
Query: 120 ---APHIGFV-GEPPPYAPPDPKAAPLLYPPFPQVPVVLQ-PAPSALFPPPAQLYP---- 170
P G V PPP PP P +A P P P + Q AP PPP +++
Sbjct: 700 QILVPPNGVVPPPPPPPPPPTPGSAMAQLKPAPCAPSLPQFSAP----PPPLKIHQVQHI 755
Query: 171 ---AAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPATVE 206
A PTPP PP A P P+ +P P + +
Sbjct: 756 TQVAPPTPPP--PPPIPAPLPPQAPPKPLVTIPAPTSTK 792
Score = 42.7 bits (99), Expect = 4e-04
Identities = 53/211 (25%), Positives = 73/211 (34%), Gaps = 34/211 (16%)
Query: 21 PAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGS--PATPEDPRSPAKPAA 78
P PPS P P+ P P +G PG + + GG P TP+ S +
Sbjct: 928 PPPPPSPVPAPPPPPPPTASPTPD-KSGSPGKKTSKTSSPGGKKPPPTPQRNSSIKSSSG 986
Query: 79 PEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPK 138
E P+ P +P++ L + + E+G SK PPP APP P
Sbjct: 987 AEHPE-PKRPSVDSL------VSKFTPPAESGSPSKETL-----------PPPAAPPKPG 1028
Query: 139 AAPLLYPPFPQVPVVLQ--------PAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFP 190
L +P VLQ P S +P+ P+ PP P P
Sbjct: 1029 KLNL---SGVNLPGVLQQGCVSAKAPVLSGRGKDSVVEFPSPPSDSDFPPPPPETELPLP 1085
Query: 191 VYNGP--MAGVPGPATVEHRPLPKDYMMESV 219
P +G P P P+ + SV
Sbjct: 1086 PIEIPAVFSGNTSPKVAVVNPQPQQWSKMSV 1116
Score = 40.8 bits (94), Expect = 0.001
Identities = 46/200 (23%), Positives = 71/200 (35%), Gaps = 30/200 (15%)
Query: 5 SPICKQLREMLERWPLPAAPPSRTPPQTLKHLPS--GEPGPPFPAGMPGGGSGSDTKGGG 62
SP+ ++++ ++P P PP+ Q LK +P+ PP P S
Sbjct: 856 SPVPSVVKQIASQFPPPPTPPA-MESQPLKPVPANVAPQSPPAVKAKPKWQPSSIPV--P 912
Query: 63 SPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPH 122
SP P P + P P P P P T D+ G+ G+ + + G P
Sbjct: 913 SPDFPPPPPESSLVFPPPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKP- 971
Query: 123 IGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPP 182
PP PQ ++ + A P P + P+ + + F+PP
Sbjct: 972 ----------------------PPTPQRNSSIKSSSGAEHPEPKR--PSVDSLVSKFTPP 1007
Query: 183 AGAAFPFPVYNGPMAGVPGP 202
A + P P A P P
Sbjct: 1008 AESGSPSKETLPPPAAPPKP 1027
Score = 35.8 bits (81), Expect = 0.045
Identities = 34/127 (26%), Positives = 42/127 (33%), Gaps = 28/127 (22%)
Query: 111 PVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPS----------- 159
P+S P+ PP PP P P PP P P+ Q APS
Sbjct: 608 PLSPQPKIVTPYTASQPSPPLPPPPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAPMFVKY 667
Query: 160 --------------ALFPPPA-QLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPAT 204
ALF PP + + P + PP G P P P PG A
Sbjct: 668 STITRLQNASQHSGALFKPPTPPVMQSQSVKPQILVPPNGVVPPPP--PPPPPPTPGSAM 725
Query: 205 VEHRPLP 211
+ +P P
Sbjct: 726 AQLKPAP 732
Score = 35.4 bits (80), Expect = 0.058
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 143 LYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGP 202
L PP P ++ P ++ PP L P P PP PP P P + P AG P
Sbjct: 605 LVPPLSPQPKIVTPYTASQPSPP--LPPPPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAP 662
Query: 203 ATVEHRPLPK 212
V++ + +
Sbjct: 663 MFVKYSTITR 672
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 60.5 bits (145), Expect = 2e-09
Identities = 60/171 (35%), Positives = 70/171 (40%), Gaps = 32/171 (18%)
Query: 44 PFPAGMPGGGSGSDTKGGGSPATPEDP---------------RSPAKPAAPEDPQMPAQP 88
P G P GG G GGG A EDP +P P P+D +
Sbjct: 2 PSSLGQPDGGGGGGGGGGGVGAAGEDPGPGPAPPPEGAQEAAPAPRPPPEPDDAAAALRL 61
Query: 89 ALPQLPR----RPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLY 144
AL QL DE+GAAG+ AAAGGA G EP P P+ A P L
Sbjct: 62 ALDQLSALGLGGAGDTDEEGAAGDGA----AAAGGADG-GAAPEPVPPDGPEAGAPPTLA 116
Query: 145 PPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGP 195
P + L P+A PPP P P+PP +F AG A P P GP
Sbjct: 117 PAVAPGSLPLLD-PNASPPPPP---PPRPSPPDVF---AGFA-PHPAALGP 159
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 60.1 bits (144), Expect = 2e-09
Identities = 61/195 (31%), Positives = 69/195 (35%), Gaps = 34/195 (17%)
Query: 39 GEPGPPFPAGMPG--GGSGSDTKGG--GSPATPEDPRSPAKPAAPEDPQMPAQPALPQLP 94
G PGPP P G PG G G D + G G P P +P KP P + +P P + L
Sbjct: 29 GLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLT 88
Query: 95 RRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEP-------PP-----YAPPDPKAAP- 141
R GA GE G + G G G P PP PP P P
Sbjct: 89 GRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPG 148
Query: 142 LLYPPFPQVPVVLQPAPSALFPPPA-QLYPAAPTPPALFSPPAGAAFPFPV-YNGPMA-- 197
L PP P P P + P A L + PP PP F P Y G
Sbjct: 149 LPGPPGPPGP----PGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEV 204
Query: 198 ---------GVPGPA 203
G PGPA
Sbjct: 205 GKDGEKGDPGPPGPA 219
Score = 40.4 bits (93), Expect = 0.002
Identities = 37/109 (33%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR 96
PSGEPG P AGMPG + +G P+ P P P P LP
Sbjct: 362 PSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGP--PGAPGVRGFQGQKGSMGDPGLP-G 418
Query: 97 PRTLDED-------GAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPK 138
P+ L D GAAG G A + G P G GE P PK
Sbjct: 419 PQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLP--GDKGELGPSGLVGPK 465
Score = 38.1 bits (87), Expect = 0.009
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 39 GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPR 98
G+PGPP PAG+PG +G P P P P P +P P +
Sbjct: 211 GDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGP-----PGIPGAPGKAG 265
Query: 99 TLDEDGAAGEAGP---VSKAAAGGAPHI-GFVGEP 129
E G G GP + + G P + G GEP
Sbjct: 266 DRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEP 300
Score = 38.1 bits (87), Expect = 0.009
Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 37 PSGEPGPPFPAGMPG-----GGSGSDTKGG--GSPATPEDPRSPAKPAAPEDPQMPAQPA 89
P G+ G P P G PG G G K G G P + AP +
Sbjct: 278 PKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEK---GPNG 334
Query: 90 LPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHI-GFVGEP 129
LP LP R + E G G AG + +A G P + G G P
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMP 375
Score = 36.6 bits (83), Expect = 0.026
Identities = 39/134 (29%), Positives = 48/134 (35%), Gaps = 18/134 (13%)
Query: 7 ICKQLREMLERWPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGM---PGGGSGSDTKGGGS 63
I +Q+ ++ P AP S P P+G PGPP P G PG +G
Sbjct: 533 ISEQIAQLAAHLRKPLAPGSIGRPG-----PAGPPGPPGPPGSIGHPGARGPPGYRGPTG 587
Query: 64 PATPEDPR--------SPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKA 115
PR A A + P+ P PQ +DGA GE GP
Sbjct: 588 ELGDPGPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGDP 647
Query: 116 AAGGAPHIGFVGEP 129
GA IG G P
Sbjct: 648 GLPGA--IGAQGTP 659
Score = 33.9 bits (76), Expect = 0.17
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 15/118 (12%)
Query: 39 GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAK----PAAPEDPQMPAQPALPQLP 94
G+ G P+G+ G S ++G P + P + P P + P +P +
Sbjct: 451 GDKGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSGVQGVPGPPGPLGLQGVPGVPGIT 510
Query: 95 RRPRTLDEDGAAGE-----AGPVSKAAAGGAPHI------GFVGEPPPYAPPDPKAAP 141
+P ++ + G +S+ A A H+ G +G P P PP P P
Sbjct: 511 GKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPGPP 568
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 60.1 bits (144), Expect = 2e-09
Identities = 54/172 (31%), Positives = 63/172 (36%), Gaps = 22/172 (12%)
Query: 18 WPLPAAPPSRTPPQTLKHLPSGEPGPPFPA-GMPGGGSGSDTKGGGSPATPEDPRSPAKP 76
+PLP +P P H P PFP P SG G PA PR A
Sbjct: 203 YPLPYSPSPSLPVGPTAH--GALPPAPFPVVSQPSFYSGP--LGPTYPAAQLGPRGAAGY 258
Query: 77 AAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPD 136
+ MP +P P P G +GP G AP G+ + PY
Sbjct: 259 SWSPQRSMPPRPGYPGTPM-----------GASGPGYPLRGGRAPSPGYP-QQSPYPATG 306
Query: 137 PKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFP 188
K + P P P QP PS PP YP P PP F PP G A+P
Sbjct: 307 GKPPYPIQPQLPSFPG--QPQPSVPLQPP---YPPGPAPPYGFPPPPGPAWP 353
Score = 41.2 bits (95), Expect = 0.001
Identities = 57/203 (28%), Positives = 66/203 (32%), Gaps = 48/203 (23%)
Query: 23 APPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSP-AKPAAP-- 79
APP R PP P P P G P P E P+ P A P P
Sbjct: 170 APPPRPPP----------PVRPVPQGTP-------------PVVEEQPQPPLAMPPYPLP 206
Query: 80 --EDPQMPAQP----ALPQLPRRPRTLDEDGAAGEAGPVSKAAA-GGAPHIGFVGEPPPY 132
P +P P ALP P P +G GP AA G G+ P
Sbjct: 207 YSPSPSLPVGPTAHGALPPAPF-PVVSQPSFYSGPLGPTYPAAQLGPRGAAGYSWSPQRS 265
Query: 133 APPDPK-------AAPLLYP------PFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALF 179
PP P A+ YP P P P P P+ PP + P P+ P
Sbjct: 266 MPPRPGYPGTPMGASGPGYPLRGGRAPSPGYPQQ-SPYPATGGKPPYPIQPQLPSFPGQP 324
Query: 180 SPPAGAAFPFPVYNGPMAGVPGP 202
P P+P P G P P
Sbjct: 325 QPSVPLQPPYPPGPAPPYGFPPP 347
Score = 40.4 bits (93), Expect = 0.002
Identities = 35/113 (30%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 90 LPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQ 149
L ++ R+PR E AG+A P PPP P P+ P + PQ
Sbjct: 153 LQEVVRKPRASQE--LAGDAPPP---------------RPPPPVRPVPQGTPPVVEEQPQ 195
Query: 150 VPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPV------YNGPM 196
P+ + P P P P+ P PT PPA PFPV Y+GP+
Sbjct: 196 PPLAMPPYPLPYSPSPS--LPVGPTAHGAL-PPA----PFPVVSQPSFYSGPL 241
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 58.5 bits (140), Expect = 6e-09
Identities = 55/169 (32%), Positives = 64/169 (37%), Gaps = 31/169 (18%)
Query: 21 PAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPE 80
P PP+ PP L HLP P PP P G + R PAKP P
Sbjct: 1193 PPPPPAEPPPTDLAHLP---PLPP-PEG--------------------EARKPAKP--PV 1226
Query: 81 DPQMPAQPALPQLPRRPR-TLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKA 139
P+ +P+L P T + G P K A G P + PPP AP KA
Sbjct: 1227 SPKPVLTQPVPKLQGSPTPTSKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPTAPKPVKA 1286
Query: 140 APLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFP 188
L P PAPS PPA L TPP+L + PA P
Sbjct: 1287 VAGL----PSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKPPSP 1331
Score = 46.2 bits (108), Expect = 3e-05
Identities = 49/173 (28%), Positives = 63/173 (36%), Gaps = 13/173 (7%)
Query: 2 GRTSPICKQLREMLERWPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGG 61
G +SP+ + +L+ P P PP P H PP P G P T
Sbjct: 716 GPSSPMSRSQEYLLDEGPAPGTPPREARPGRHGHSIKRASVPPVP-GKPRQVLPPGTSHF 774
Query: 62 GSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAP 121
P TP R P P A P PA PA ++ P+ L P+S + +P
Sbjct: 775 TPPQTPTKTR-PGSPQALGGPHGPA-PATAKVKPTPQLLPP-----TERPMSPRSLPQSP 827
Query: 122 -HIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAP 173
H GF P P + + P P P P V P+ PP A P P
Sbjct: 828 THRGFAYVLP--QPVEGEVGPA--APGPAPPPVPTAVPTLCLPPEADAEPGRP 876
Score = 34.7 bits (78), Expect = 0.100
Identities = 36/115 (31%), Positives = 45/115 (39%), Gaps = 20/115 (17%)
Query: 19 PLPAAPPSR----TPPQTLKHLPSGEPGPPFP----AGMPGGGSGSDTKGGGSPATPEDP 70
P P +P + TPP + P P P P AG+P G +G SPA + P
Sbjct: 1253 PGPGSPEVKRAHGTPP-PVSPKPPPPPTAPKPVKAVAGLPSGSAGPSP--APSPAR-QPP 1308
Query: 71 RSPAKP--------AAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAA 117
+ AKP A+P P P PAL + PR AA A P A
Sbjct: 1309 AALAKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAAPPAPPEGA 1363
Score = 34.3 bits (77), Expect = 0.13
Identities = 51/214 (23%), Positives = 67/214 (31%), Gaps = 46/214 (21%)
Query: 24 PPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQ 83
P R PQ+L+ + P PP P S T S + E + PA
Sbjct: 617 PLRRKAPQSLEVMAIESPPPPEPTPADCQ-SPKMTTFQDSELSDELQAAMTGPAEVGPTT 675
Query: 84 MPAQPALPQLPRRPRTLDE-----------------DGAAGEAGPVSKAAA-----GGAP 121
LP PR D DG G + P+S++ G AP
Sbjct: 676 EKPSSHLPPTPRATTRQDSSLGGRARHMSSSQELLGDGPPGPSSPMSRSQEYLLDEGPAP 735
Query: 122 HIGFVGEPPPYAPPDPKAAPLL---YPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPAL 178
G PP A P + PP P P + P ++ F PP P P
Sbjct: 736 -----GTPPREARPGRHGHSIKRASVPPVPGKPRQVLPPGTSHFTPPQTPTKTRPGSPQA 790
Query: 179 FSPPAGAAFPFPVYNGPMAGVPGPATVEHRPLPK 212
P G P PAT + +P P+
Sbjct: 791 LGGPHG---------------PAPATAKVKPTPQ 809
Score = 33.9 bits (76), Expect = 0.17
Identities = 57/229 (24%), Positives = 75/229 (32%), Gaps = 43/229 (18%)
Query: 19 PLPAAP-PSR--TPPQTLKHLPSGEPGPPFP------AGMPGGGSGSDTKGGGSPATP-- 67
P PA+P P R T ++KH + PG +G G + +G G A P
Sbjct: 1030 PRPASPEPGRVATVLASVKHKEAIGPGGEVVNRRRTLSGPVTGLLATARRGPGESADPGP 1089
Query: 68 --------EDPRSPAK-PAAPEDPQMPAQPALPQLPRRPRT-----------LDEDGAAG 107
+ PR P+K A E P + A L RR R L E
Sbjct: 1090 FVEDGTGRQRPRGPSKGEAGVEGPPLAKVEASATLKRRIRAKQNQQENVKFILTESDTVK 1149
Query: 108 EAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQV--PVVLQPAPSALFPPP 165
+ AG P PPP + + P + P L P P PPP
Sbjct: 1150 RRPKAKEREAGPEP-------PPPLSVYHNGTGTVRRRPASEQAGPPELPPPPPPAEPPP 1202
Query: 166 AQLYPAAPTPP---ALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRPLP 211
L P PP P P PV P+ + G T + +P
Sbjct: 1203 TDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQPVPKLQGSPTPTSKKVP 1251
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 58.2 bits (139), Expect = 8e-09
Identities = 54/176 (30%), Positives = 60/176 (34%), Gaps = 31/176 (17%)
Query: 24 PPSRTPPQTLKHL-PSGEPGPPFPAGMPG--GGSGSDTKGG--GSPATPEDPRSPAKPAA 78
P TP QT P GE GPP P G PG G G D G G P P P KP A
Sbjct: 256 PARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGA 315
Query: 79 PEDPQMPAQPALPQLPRRPRTLDEDGAAGE--------------AGPVSKAAAGGAP--- 121
P P P L P ++ G GE GP G P
Sbjct: 316 PGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGEL 375
Query: 122 -HIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVL---QPAPSALFPPPAQLYPAAP 173
+G VG+P PP P PP P+ + P PP YP P
Sbjct: 376 GRVGPVGDPGRRGPPGPPG-----PPGPRGTIGFHDGDPLCPNACPPGRSGYPGLP 426
Score = 48.9 bits (115), Expect = 5e-06
Identities = 45/160 (28%), Positives = 56/160 (35%), Gaps = 10/160 (6%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAA 78
P A P + + +P G PGP G+PG G D G P P P KP
Sbjct: 510 PGEAGPKGDRGAEGARGIP-GLPGPKGDTGLPGV-DGRD----GIPGMPGTKGEPGKPGP 563
Query: 79 PEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPK 138
P D + P +P +P E G+ G G + G P G G P P P+
Sbjct: 564 PGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKP--GQQGPPGEVGPRGPQ 621
Query: 139 AAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPAL 178
P PV P L + P P PP L
Sbjct: 622 GLPGSRGELG--PVGSPGLPGKLGSLGSPGLPGLPGPPGL 659
Score = 43.9 bits (102), Expect = 2e-04
Identities = 57/214 (26%), Positives = 70/214 (32%), Gaps = 48/214 (22%)
Query: 37 PSGEPGPPFPAGMPGG-GSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPR 95
P GE GP P G+PG G G P SP P P P +P +
Sbjct: 611 PPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVG 670
Query: 96 RPRTLDEDGAAGEAG-------------PVSKAAAG--GAPHI-------GFVGEPPPYA 133
P E GA+GE G P K +AG G P + G G P
Sbjct: 671 EPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLRGPEGSRGLPGVEGPRG 730
Query: 134 PPDPKAA---------PLLYPPFPQVPV----------VLQP-----APSALFPPP-AQL 168
PP P+ P + P + P V+Q A S P A
Sbjct: 731 PPGPRGVQGEQGATGLPGVQGPPGRAPTDQHIKQVCMRVIQEHFAEMAASLKRPDSGATG 790
Query: 169 YPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGP 202
P P PP PP FP + + G+ GP
Sbjct: 791 LPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGP 824
Score = 38.1 bits (87), Expect = 0.009
Identities = 42/151 (27%), Positives = 48/151 (31%), Gaps = 30/151 (19%)
Query: 81 DPQMPAQPALPQLPRR---PRTLDEDGAAGEAGPVSKAAAGGAPHI-GFVGEPPPYAPPD 136
DP P + +LP R +T DE G GE GP G P I G G+ P PP
Sbjct: 243 DPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPG 302
Query: 137 PKAAPLLYPPFPQVP-VVLQPAPSALFPP------------------------PAQLYPA 171
P P P P P P L P P + P
Sbjct: 303 P-PGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPG 361
Query: 172 APTPPALFSPPAGAAFPFPVYNGPMAGVPGP 202
P PP P PV + G PGP
Sbjct: 362 PPGPPGTAGLPGELGRVGPVGDPGRRGPPGP 392
Score = 31.2 bits (69), Expect = 1.1
Identities = 32/115 (27%), Positives = 39/115 (33%), Gaps = 8/115 (6%)
Query: 24 PPSRTPP-QTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDP 82
PP R P Q +K + F A M D+ G P P P P P P
Sbjct: 752 PPGRAPTDQHIKQVCMRVIQEHF-AEMAASLKRPDSGATGLPGRPGPPGPPGPPGENGFP 810
Query: 83 QMPAQPALPQLPRRPRTL------DEDGAAGEAGPVSKAAAGGAPHIGFVGEPPP 131
LP + P L + G GE GP + G IG G+P P
Sbjct: 811 GQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGP 865
Score = 30.4 bits (67), Expect = 1.9
Identities = 31/118 (26%), Positives = 35/118 (29%), Gaps = 27/118 (22%)
Query: 39 GEPGPPFPAGMPGGGSGSDTKG-GGSPATPEDP--------------RSPAKPAAPEDPQ 83
G PGPP P G PG G G P P + P
Sbjct: 793 GRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNG 852
Query: 84 MPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAP 141
+P LP P P + +G GE GP A G P PP P P
Sbjct: 853 LPGAIGLPGDP-GPASYGRNGRDGERGPPGVAGIPGVP-----------GPPGPPGLP 898
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 58.2 bits (139), Expect = 8e-09
Identities = 56/192 (29%), Positives = 65/192 (33%), Gaps = 18/192 (9%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAA 78
PLP P R P G P PP P P T G P P P
Sbjct: 208 PLPPTPGQRLHPGR-----EGPPAPP-PVKPPPSPVNIRTGPSGQSLAPPPPPYRQPPGV 261
Query: 79 PEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYA--PPD 136
P P P + P+LP+R +L G +P + PPP A PP
Sbjct: 262 PNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASPSL-LSNRPPPPARDPPS 320
Query: 137 PKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGPM 196
AAP PP P PV+ A A PPP + P PP + P GP
Sbjct: 321 RGAAP---PPPP--PVIRNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRTP----AGPP 371
Query: 197 AGVPGPATVEHR 208
P P HR
Sbjct: 372 PPPPPPLRNGHR 383
Score = 38.9 bits (89), Expect = 0.005
Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 27/148 (18%)
Query: 70 PRSPAKPAA--PEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVG 127
PR P A+ P+D ++ +LP+LPR R + + + ++ G H
Sbjct: 123 PRPPVSAASGRPQDDTDSSRASLPELPRMQRP-----SLPDLSRPNTTSSTGMKHSSSAP 177
Query: 128 EPPP-----YAPPDP-----KAAPLLYPPFPQVPVVLQ---------PAPSALFPPPAQL 168
PPP APP P AP P P Q PAP + PPP+ +
Sbjct: 178 PPPPPGRRANAPPTPLPMHSSKAPAYNREKPLPPTPGQRLHPGREGPPAPPPVKPPPSPV 237
Query: 169 -YPAAPTPPALFSPPAGAAFPFPVYNGP 195
P+ +L PP P V NGP
Sbjct: 238 NIRTGPSGQSLAPPPPPYRQPPGVPNGP 265
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 57.8 bits (138), Expect = 1e-08
Identities = 61/165 (36%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 28 TPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQ 87
TPP TL L +G PAG G +G GS A PR P K + P +P
Sbjct: 94 TPP-TLGDLFAGGFPVLRPAGQRDVAGGKTGQGPGSRAP--SPRLPNKTIS--GPLIP-- 146
Query: 88 PALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPP-----DPKAAPL 142
P PR T + GAA A P A P PPP PP P PL
Sbjct: 147 ---PASPRLGNTSEAHGAARTAPPRPNVPAPPPPT---PPPPPPPLPPPLPSSSPIKTPL 200
Query: 143 LYPPFP----QVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPA 183
+ PP P +PVV P P A PPP P PTPP L PPA
Sbjct: 201 VSPPGPLTKGNLPVVAPPVPCAPPPPPP---PPPPTPPPL--PPA 240
Score = 53.1 bits (126), Expect = 3e-07
Identities = 61/215 (28%), Positives = 74/215 (34%), Gaps = 48/215 (22%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAA 78
P AP R P +T+ GP P P G+ S+ G A P P PA P
Sbjct: 126 PGSRAPSPRLPNKTIS-------GPLIPPASPRLGNTSEAHGAARTAPPR-PNVPAPP-- 175
Query: 79 PEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGG-APHIGFVGEPPPYAPPD- 136
P P P P P LP + GP++K AP + PPP PP
Sbjct: 176 PPTPPPPPPPLPPPLPSSSPI--KTPLVSPPGPLTKGNLPVVAPPVPCAPPPPPPPPPPT 233
Query: 137 ----------------PKAAPL----LYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPP 176
P+ APL + PP P +P P A PAQ P PP
Sbjct: 234 PPPLPPASVLSDKAVKPQLAPLHLPPIPPPLPLLPPCGYPGLKAEPASPAQDAQEPPAPP 293
Query: 177 ALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRPLP 211
P A + P A +P P PLP
Sbjct: 294 PPLPPYASCS--------PRASLPAP------PLP 314
Score = 52.8 bits (125), Expect = 4e-07
Identities = 61/216 (28%), Positives = 70/216 (32%), Gaps = 55/216 (25%)
Query: 1 MGRTSPICKQLREMLERWPLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGS------ 54
+G TS R R +PA PP PP P PP P +P
Sbjct: 152 LGNTSEAHGAARTAPPRPNVPAPPPPTPPP----------PPPPLPPPLPSSSPIKTPLV 201
Query: 55 ---GSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPA-----------------LPQLP 94
G TKG P P +P P P P P P LP +P
Sbjct: 202 SPPGPLTKGNLPVVAPPVPCAPPPPPPPPPPTPPPLPPASVLSDKAVKPQLAPLHLPPIP 261
Query: 95 RRPRTLDEDGAAG-EAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAP---LLYPPFP-- 148
L G G +A P S A P PPP PP +P L PP P
Sbjct: 262 PPLPLLPPCGYPGLKAEPASPAQDAQEPPA-----PPPPLPPYASCSPRASLPAPPLPGV 316
Query: 149 ----QVPVVLQPAPSALFPPP----AQLYPAAPTPP 176
+ P L P + PP AQ PA P PP
Sbjct: 317 NSSSETPPPLPPKSPSFQAPPQKAGAQALPAPPAPP 352
Score = 42.7 bits (99), Expect = 4e-04
Identities = 45/163 (27%), Positives = 58/163 (35%), Gaps = 17/163 (10%)
Query: 55 GSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSK 114
G++ +GGGS T R + P D P L +R D G GP S+
Sbjct: 78 GTNKEGGGSANT----RGASTPPTLGDLFAGGFPVLRPAGQR----DVAGGKTGQGPGSR 129
Query: 115 AAAGGAPHIGFVGEPPPYAPP------DPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQL 168
A + P+ G P A P + A PP P VP P P PPP L
Sbjct: 130 APSPRLPNKTISGPLIPPASPRLGNTSEAHGAARTAPPRPNVPAPPPPTPP---PPPPPL 186
Query: 169 YPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGPATVEHRPLP 211
P P+ + +P P N P+ P P P P
Sbjct: 187 PPPLPSSSPIKTPLVSPPGPLTKGNLPVVAPPVPCAPPPPPPP 229
Score = 37.0 bits (84), Expect = 0.020
Identities = 34/115 (29%), Positives = 42/115 (36%), Gaps = 23/115 (20%)
Query: 21 PAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPE 80
P APP PP + P PP +PG S S+T P P+SP+ A P+
Sbjct: 289 PPAPPPPLPPYASCSPRASLPAPP----LPGVNSSSET------PPPLPPKSPSFQAPPQ 338
Query: 81 DPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPP 135
A PA P P + P + G P G PP APP
Sbjct: 339 KAGAQALPAPPAPP-------------GSQPFLQKKRHGRPGAGGGKLNPPPAPP 380
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 57.0 bits (136), Expect = 2e-08
Identities = 56/205 (27%), Positives = 68/205 (33%), Gaps = 35/205 (17%)
Query: 20 LPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAP 79
+P AP + PP G GPP P G+PG G T G P +P +P P
Sbjct: 247 MPGAPGVKGPP--------GMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPG-P 297
Query: 80 EDP---------------QMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIG 124
+ P P Q +P P P E G G GP G P IG
Sbjct: 298 QGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPP------GLPGIG 351
Query: 125 FVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAG 184
G P P P P + + P PP + P P P PP
Sbjct: 352 KPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGG---PPGE--PGLPGIPGPMGPPGA 406
Query: 185 AAFPFPVYNGPMAGVPGPATVEHRP 209
FP P G + G GP + P
Sbjct: 407 IGFPGPKGEGGIVGPQGPPGPKGEP 431
Score = 56.2 bits (134), Expect = 3e-08
Identities = 52/173 (30%), Positives = 60/173 (34%), Gaps = 17/173 (9%)
Query: 39 GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPR 98
GEPGP P G+PG G G P P P P + +P P P LP
Sbjct: 293 GEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLP---- 348
Query: 99 TLDEDGAAGEAGPVSKAAAGGAP-HIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPA 157
G G GP GG P +G GE P P P P P +P + P
Sbjct: 349 ---GIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPG-IGGPPGEPGLPGIPGPMGPP 404
Query: 158 PSALFPPP--------AQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGP 202
+ FP P Q P P L P F V M G+PGP
Sbjct: 405 GAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGP 457
Score = 51.6 bits (122), Expect = 8e-07
Identities = 53/177 (29%), Positives = 61/177 (34%), Gaps = 17/177 (9%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMP--AQPALPQLP 94
P G PG P G+PG G G P P P P P +P +P P P
Sbjct: 300 PIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPG-P 358
Query: 95 RRPRTL----DEDGAAGEAGPVSKAAAGGAP-HIGFVGEPPPYAPPDPKAAPLLYPPFPQ 149
+ R + G GE GP+ GG P G G P P PP P P
Sbjct: 359 KGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFP--GPKGEG 416
Query: 150 VPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGP-----MAGVPG 201
V Q P P Q +P P PP P P+ GP GVPG
Sbjct: 417 GIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPI--GPKGEAGQKGVPG 471
Score = 49.7 bits (117), Expect = 3e-06
Identities = 53/177 (29%), Positives = 62/177 (35%), Gaps = 34/177 (19%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR 96
P GEPG P G+ G G G P+ P P P P +P +P P P + +
Sbjct: 481 PKGEPGIPGDQGLQGPPG---IPGIGGPSGPIGP--PGIPGPKGEPGLPGPPGFPGIGK- 534
Query: 97 PRTLDEDGAAGEAGPVSKAAA-GGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQ 155
G AG GP K A G G G P P PP P P + PP P
Sbjct: 535 ------PGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGP---PAVMPPTPPPQGEYL 585
Query: 156 P----APSALFPP------------PAQLYPAAPTPPALFSPPAGAAFPFP--VYNG 194
P + PP PA PA PP GA F +YNG
Sbjct: 586 PDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNG 642
Score = 48.9 bits (115), Expect = 5e-06
Identities = 50/180 (27%), Positives = 62/180 (34%), Gaps = 27/180 (15%)
Query: 21 PAAPPSRTPPQTLKHLPS-----GEPGPPFPAGMPG--GGSGSDTKGG--GSPATPEDPR 71
P PP L+ P GE GPP G+PG G G + G G P P
Sbjct: 421 PQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLG 480
Query: 72 SPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPP 131
+P P D + P +P + + G G G G P IG G
Sbjct: 481 PKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGL 540
Query: 132 YAPP------DPKAAP-LLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAG 184
+ PP P+ P L PP P P P P A+ PP P P + P G
Sbjct: 541 HGPPGKPGALGPQGQPGLPGPPGPPGP----PGPPAVMPP-------TPPPQGEYLPDMG 589
Score = 48.1 bits (113), Expect = 9e-06
Identities = 62/227 (27%), Positives = 73/227 (32%), Gaps = 51/227 (22%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAA 78
P P PP PP H G G P P G PG G G P P P + P A
Sbjct: 126 PGPRGPPG--PPGLPGHGIPGIKGKPGPQGYPGVGKP------GMPGMPGKPGAMGMPGA 177
Query: 79 -----------------PEDPQMP------AQPALPQLPRRPRTLDEDGAAGEAGPVSKA 115
P+ P P +P P LP +P + G G GP
Sbjct: 178 KGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLR 237
Query: 116 AAGGAPHIGFVGEP----PP--YAPPDPKAAP------LLYPPFPQVPVVLQPAPSALFP 163
G G G P PP + PP P P + P PQ P+ AP P
Sbjct: 238 GPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGP 297
Query: 164 PPAQLYPAAPTPPAL--FSPPAGAAFP----FPVYNGP--MAGVPGP 202
P PP + P P FP G + G+PGP
Sbjct: 298 QGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGP 344
Score = 45.1 bits (105), Expect = 7e-05
Identities = 63/273 (23%), Positives = 81/273 (29%), Gaps = 99/273 (36%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSD--------------------- 57
PLP P + PPQ ++ P G+ P P G G +
Sbjct: 35 PLPPQIPPQMPPQIPQYQPLGQQVPHMPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQ 94
Query: 58 ---------------------TKGGGSPATPEDPRSPAKP--------------AAPEDP 82
+G P PR P P P+
Sbjct: 95 PAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGY 154
Query: 83 QMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAP- 141
+P +P +P +P + GA GE G + IG +G P P PP P P
Sbjct: 155 PGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGE--------IGPMGIPGPQGPPGPHGLPG 206
Query: 142 LLYPPFPQVPVVLQPAPSA-----LFPPPAQL----------YPAAP---TPPALFSPPA 183
+ P P +P QP P P P L P AP PP + PP
Sbjct: 207 IGKPGGPGLPG--QPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPG 264
Query: 184 GAAFP---------FPVYNGPMA-----GVPGP 202
P FP GP+ G PGP
Sbjct: 265 PVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGP 297
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 57.0 bits (136), Expect = 2e-08
Identities = 56/205 (27%), Positives = 68/205 (33%), Gaps = 35/205 (17%)
Query: 20 LPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAP 79
+P AP + PP G GPP P G+PG G T G P +P +P P
Sbjct: 247 MPGAPGVKGPP--------GMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPG-P 297
Query: 80 EDP---------------QMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIG 124
+ P P Q +P P P E G G GP G P IG
Sbjct: 298 QGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPP------GLPGIG 351
Query: 125 FVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAG 184
G P P P P + + P PP + P P P PP
Sbjct: 352 KPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGG---PPGE--PGLPGIPGPMGPPGA 406
Query: 185 AAFPFPVYNGPMAGVPGPATVEHRP 209
FP P G + G GP + P
Sbjct: 407 IGFPGPKGEGGIVGPQGPPGPKGEP 431
Score = 56.2 bits (134), Expect = 3e-08
Identities = 52/173 (30%), Positives = 60/173 (34%), Gaps = 17/173 (9%)
Query: 39 GEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRRPR 98
GEPGP P G+PG G G P P P P + +P P P LP
Sbjct: 293 GEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLP---- 348
Query: 99 TLDEDGAAGEAGPVSKAAAGGAP-HIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQPA 157
G G GP GG P +G GE P P P P P +P + P
Sbjct: 349 ---GIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPG-IGGPPGEPGLPGIPGPMGPP 404
Query: 158 PSALFPPP--------AQLYPAAPTPPALFSPPAGAAFPFPVYNGPMAGVPGP 202
+ FP P Q P P L P F V M G+PGP
Sbjct: 405 GAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGP 457
Score = 51.6 bits (122), Expect = 8e-07
Identities = 53/177 (29%), Positives = 61/177 (34%), Gaps = 17/177 (9%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMP--AQPALPQLP 94
P G PG P G+PG G G P P P P P +P +P P P
Sbjct: 300 PIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPG-P 358
Query: 95 RRPRTL----DEDGAAGEAGPVSKAAAGGAP-HIGFVGEPPPYAPPDPKAAPLLYPPFPQ 149
+ R + G GE GP+ GG P G G P P PP P P
Sbjct: 359 KGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFP--GPKGEG 416
Query: 150 VPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAGAAFPFPVYNGP-----MAGVPG 201
V Q P P Q +P P PP P P+ GP GVPG
Sbjct: 417 GIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPI--GPKGEAGQKGVPG 471
Score = 49.7 bits (117), Expect = 3e-06
Identities = 53/177 (29%), Positives = 62/177 (35%), Gaps = 34/177 (19%)
Query: 37 PSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAAPEDPQMPAQPALPQLPRR 96
P GEPG P G+ G G G P+ P P P P +P +P P P + +
Sbjct: 481 PKGEPGIPGDQGLQGPPG---IPGIGGPSGPIGP--PGIPGPKGEPGLPGPPGFPGIGK- 534
Query: 97 PRTLDEDGAAGEAGPVSKAAA-GGAPHIGFVGEPPPYAPPDPKAAPLLYPPFPQVPVVLQ 155
G AG GP K A G G G P P PP P P + PP P
Sbjct: 535 ------PGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGP---PAVMPPTPPPQGEYL 585
Query: 156 P----APSALFPP------------PAQLYPAAPTPPALFSPPAGAAFPFP--VYNG 194
P + PP PA PA PP GA F +YNG
Sbjct: 586 PDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNG 642
Score = 48.9 bits (115), Expect = 5e-06
Identities = 50/180 (27%), Positives = 62/180 (34%), Gaps = 27/180 (15%)
Query: 21 PAAPPSRTPPQTLKHLPS-----GEPGPPFPAGMPG--GGSGSDTKGG--GSPATPEDPR 71
P PP L+ P GE GPP G+PG G G + G G P P
Sbjct: 421 PQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLG 480
Query: 72 SPAKPAAPEDPQMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPP 131
+P P D + P +P + + G G G G P IG G
Sbjct: 481 PKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGL 540
Query: 132 YAPP------DPKAAP-LLYPPFPQVPVVLQPAPSALFPPPAQLYPAAPTPPALFSPPAG 184
+ PP P+ P L PP P P P P A+ PP P P + P G
Sbjct: 541 HGPPGKPGALGPQGQPGLPGPPGPPGP----PGPPAVMPP-------TPPPQGEYLPDMG 589
Score = 48.1 bits (113), Expect = 9e-06
Identities = 62/227 (27%), Positives = 73/227 (32%), Gaps = 51/227 (22%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSDTKGGGSPATPEDPRSPAKPAA 78
P P PP PP H G G P P G PG G G P P P + P A
Sbjct: 126 PGPRGPPG--PPGLPGHGIPGIKGKPGPQGYPGVGKP------GMPGMPGKPGAMGMPGA 177
Query: 79 -----------------PEDPQMP------AQPALPQLPRRPRTLDEDGAAGEAGPVSKA 115
P+ P P +P P LP +P + G G GP
Sbjct: 178 KGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLR 237
Query: 116 AAGGAPHIGFVGEP----PP--YAPPDPKAAP------LLYPPFPQVPVVLQPAPSALFP 163
G G G P PP + PP P P + P PQ P+ AP P
Sbjct: 238 GPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGP 297
Query: 164 PPAQLYPAAPTPPAL--FSPPAGAAFP----FPVYNGP--MAGVPGP 202
P PP + P P FP G + G+PGP
Sbjct: 298 QGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGP 344
Score = 45.1 bits (105), Expect = 7e-05
Identities = 63/273 (23%), Positives = 81/273 (29%), Gaps = 99/273 (36%)
Query: 19 PLPAAPPSRTPPQTLKHLPSGEPGPPFPAGMPGGGSGSD--------------------- 57
PLP P + PPQ ++ P G+ P P G G +
Sbjct: 35 PLPPQIPPQMPPQIPQYQPLGQQVPHMPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQ 94
Query: 58 ---------------------TKGGGSPATPEDPRSPAKP--------------AAPEDP 82
+G P PR P P P+
Sbjct: 95 PAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGY 154
Query: 83 QMPAQPALPQLPRRPRTLDEDGAAGEAGPVSKAAAGGAPHIGFVGEPPPYAPPDPKAAP- 141
+P +P +P +P + GA GE G + IG +G P P PP P P
Sbjct: 155 PGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGE--------IGPMGIPGPQGPPGPHGLPG 206
Query: 142 LLYPPFPQVPVVLQPAPSA-----LFPPPAQL----------YPAAP---TPPALFSPPA 183
+ P P +P QP P P P L P AP PP + PP
Sbjct: 207 IGKPGGPGLPG--QPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPG 264
Query: 184 GAAFP---------FPVYNGPMA-----GVPGP 202
P FP GP+ G PGP
Sbjct: 265 PVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGP 297
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.138 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,548,626
Number of Sequences: 37866
Number of extensions: 1448982
Number of successful extensions: 31421
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 1738
Number of HSP's that attempted gapping in prelim test: 10577
Number of HSP's gapped (non-prelim): 10858
length of query: 288
length of database: 18,247,518
effective HSP length: 101
effective length of query: 187
effective length of database: 14,423,052
effective search space: 2697110724
effective search space used: 2697110724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.