Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 19923572
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923572 SLAM family member 7 [Homo sapiens]
(335 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923572 SLAM family member 7 [Homo sapiens] 687 0.0
gi|4502687 CD84 molecule [Homo sapiens] 134 9e-32
gi|226342990 SLAM family member 9 isoform 1 [Homo sapiens] 122 3e-28
gi|55925578 lymphocyte antigen 9 isoform a [Homo sapiens] 117 1e-26
gi|16418407 activating NK receptor precursor [Homo sapiens] 114 1e-25
gi|4506969 signaling lymphocytic activation molecule family memb... 60 4e-09
gi|7706529 CD244 natural killer cell receptor 2B4 [Homo sapiens] 58 1e-08
gi|9910342 SLAM family member 8 [Homo sapiens] 54 2e-07
gi|75991709 lymphocyte antigen 9 isoform b [Homo sapiens] 52 6e-07
gi|226342992 SLAM family member 9 isoform 2 [Homo sapiens] 50 3e-06
gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens] 49 5e-06
gi|156071472 CD2 molecule [Homo sapiens] 42 6e-04
gi|68161541 carcinoembryonic antigen-related cell adhesion molec... 42 0.001
gi|19923195 carcinoembryonic antigen-related cell adhesion molec... 42 0.001
gi|4503173 coxsackie virus and adenovirus receptor precursor [Ho... 40 0.004
gi|40255013 carcinoembryonic antigen-related cell adhesion molec... 40 0.004
gi|13376115 adipocyte-specific adhesion molecule [Homo sapiens] 37 0.019
gi|21314600 carcinoembryonic antigen-related cell adhesion molec... 34 0.16
gi|98986445 carcinoembryonic antigen-related cell adhesion molec... 33 0.27
gi|157805480 pregnancy specific beta-1-glycoprotein 7 precursor ... 33 0.27
gi|45594240 limbic system-associated membrane protein [Homo sapi... 33 0.36
gi|5729993 protein tyrosine phosphatase, receptor type, E isofor... 32 0.61
gi|140560917 myomesin 1 isoform b [Homo sapiens] 32 0.80
gi|140560919 myomesin 1 isoform a [Homo sapiens] 32 0.80
gi|169203189 PREDICTED: hypothetical protein LOC338667 [Homo sap... 32 1.0
gi|169203683 PREDICTED: hypothetical protein LOC338667 [Homo sap... 32 1.0
gi|169202109 PREDICTED: hypothetical protein LOC338667 [Homo sap... 32 1.0
gi|37700254 triggering receptor expressed on myeloid cells-like ... 31 1.4
gi|14149981 transmembrane protein 117 [Homo sapiens] 31 1.4
gi|109240546 pregnancy specific beta-1-glycoprotein 3 [Homo sapi... 31 1.4
>gi|19923572 SLAM family member 7 [Homo sapiens]
Length = 335
Score = 687 bits (1772), Expect = 0.0
Identities = 335/335 (100%), Positives = 335/335 (100%)
Query: 1 MAGSPTCLTLIYILWQLTGSAASGPVKELVGSVGGAVTFPLKSKVKQVDSIVWTFNTTPL 60
MAGSPTCLTLIYILWQLTGSAASGPVKELVGSVGGAVTFPLKSKVKQVDSIVWTFNTTPL
Sbjct: 1 MAGSPTCLTLIYILWQLTGSAASGPVKELVGSVGGAVTFPLKSKVKQVDSIVWTFNTTPL 60
Query: 61 VTIQPEGGTIIVTQNRNRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEY 120
VTIQPEGGTIIVTQNRNRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEY
Sbjct: 61 VTIQPEGGTIIVTQNRNRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEY 120
Query: 121 VLHVYEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSIL 180
VLHVYEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSIL
Sbjct: 121 VLHVYEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSIL 180
Query: 181 PISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMVLLCLLLVPLLLSL 240
PISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMVLLCLLLVPLLLSL
Sbjct: 181 PISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMVLLCLLLVPLLLSL 240
Query: 241 FVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDTIPHTNRTILKEDPA 300
FVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDTIPHTNRTILKEDPA
Sbjct: 241 FVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDTIPHTNRTILKEDPA 300
Query: 301 NTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI 335
NTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI
Sbjct: 301 NTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI 335
>gi|4502687 CD84 molecule [Homo sapiens]
Length = 328
Score = 134 bits (338), Expect = 9e-32
Identities = 106/338 (31%), Positives = 162/338 (47%), Gaps = 30/338 (8%)
Query: 11 IYILWQLTGSAASGPVKELV---GSVGGAVTFPLK-SKVKQVDSIVWTFNTTPLVTIQPE 66
I +L T A+G E+ G +G +VTFP+ + +QV I WT T+ +
Sbjct: 8 ILLLCLQTWPEAAGKDSEIFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGD 67
Query: 67 GGT---IIVTQNRNRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLH 123
T + VT ER+ Y+L +S L+ D+G Y I + + +T+ Y L
Sbjct: 68 SETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQ 127
Query: 124 VYEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPIS 183
+Y L KPK+T L ++ N TC LTC +E E++V Y W LG+ G++L I
Sbjct: 128 IYRRLGKPKITQSLMASVNSTCNVTLTCSVEKEEKNVTYNWSPLGE------EGNVLQIF 181
Query: 184 WRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDS------SMVLLCLLLVPLL 237
+ ++T+ C A+NPVS N S I AR+LC A + S++ + LLV +L
Sbjct: 182 QTPEDQELTYTCTAQNPVSNN-SDSISARQLCADIAMGFRTHHTGLLSVLAMFFLLVLIL 240
Query: 238 LSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDTIPHTNRTILKE 297
S+F+ LF +R+++ +K + N P E+ YD I + KE
Sbjct: 241 SSVFLFRLF------KRRQDAASKKTIYTYIMASRNTQP--AESRIYDEILQSKVLPSKE 292
Query: 298 DPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI 335
+P NTVYS V+ KM + + P P +YE VI
Sbjct: 293 EPVNTVYSEVQFADKMGKASTQDSKP--PGTSSYEIVI 328
>gi|226342990 SLAM family member 9 isoform 1 [Homo sapiens]
Length = 289
Score = 122 bits (307), Expect = 3e-28
Identities = 80/258 (31%), Positives = 138/258 (53%), Gaps = 16/258 (6%)
Query: 14 LWQLTGSAASGPVKELVGSVGGAVTFPLKSKV-KQVDSIVWTFNTTPLVTIQP--EG--G 68
LW+ GS +E+V + +++ PL+ ++V++I+W+ + + L T+ P EG
Sbjct: 21 LWRWCGS------EEVVAVLQESISLPLEIPPDEEVENIIWSSHKS-LATVVPGKEGHPA 73
Query: 69 TIIVTQNRNRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLHVYEHL 128
TI+VT + +V F D YSL +S L DSG+Y + + Q + Q+Y + VY L
Sbjct: 74 TIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLRTSQISTMQQYNICVYRWL 133
Query: 129 SKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGE 188
S+P++T+ +S+ G C +L C +E D+ Y+W + G + H G +L SWR G+
Sbjct: 134 SEPQITVNFESSGEGACSMSLVCSVEKAGMDMTYSWLSRGDSTYTFHEGPVLSTSWRPGD 193
Query: 189 SDMTFICVARNPVSRNFSSPILARKLCEG---AADDPDSSMVLLCLLLVPLLLSLFVLGL 245
S +++ C A NP+S S PI A++ P ++ LL L+ LL L +L +
Sbjct: 194 SALSYTCRANNPISNVSSCPIPDGPFYADPNYASEKPSTAFCLLAKGLLIFLL-LVILAM 252
Query: 246 FLWFLKRERQEEYIEEKK 263
LW ++ +++ + KK
Sbjct: 253 GLWVIRVQKRHKMPRMKK 270
>gi|55925578 lymphocyte antigen 9 isoform a [Homo sapiens]
Length = 655
Score = 117 bits (294), Expect = 1e-26
Identities = 78/241 (32%), Positives = 123/241 (51%), Gaps = 12/241 (4%)
Query: 19 GSAASGPVKE-LVGSVGGAVTFPLKSKV-KQVDSIVWTFNTTPLVTIQPEGGT---IIVT 73
G++ G E +VG +G VT PL + + +VW FNT+ + + E T +I +
Sbjct: 246 GASRGGTTGETVVGVLGEPVTLPLALPACRDTEKVVWLFNTSIISKEREEAATADPLIKS 305
Query: 74 QNRNRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLHVYEHLSKPKV 133
++ + RV SLK+S+LK D+G Y+ + S + S L +Y L KPK+
Sbjct: 306 RDPYKNRVWVSSQDCSLKISQLKIEDAGPYHAYVCSEASSVTSMTHVTLLIYRRLRKPKI 365
Query: 134 TMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGESDMTF 193
T L+ +++G C +LTC +E G V+YTW L + A S S L +SWR E+
Sbjct: 366 TWSLRHSEDGICRISLTCSVEDGGNTVMYTWTPLQKEAVVSQGESHLNVSWRSSENHPNL 425
Query: 194 ICVARNPVSRNFSSPILARKLCEGAADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRE 253
C A NPVSR+ S L+ +C G P+ + L L L++ L +G+F W + +
Sbjct: 426 TCTASNPVSRS-SHQFLSENICSG----PERNTKLWIGLF--LMVCLLCVGIFSWCIWKR 478
Query: 254 R 254
+
Sbjct: 479 K 479
Score = 114 bits (284), Expect = 2e-25
Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 5/236 (2%)
Query: 9 TLIYILWQLTGSAASGPVKELVGSVGGAVTFPLKSKVK-QVDSIVWTFNTTPLVTIQPEG 67
+L+++L L S + G +GG+VT PL V ++++++W L +P+
Sbjct: 35 SLLFLLMGLRASGKDSAPTVVSGILGGSVTLPLNISVDTEIENVIWIGPKNALAFARPKE 94
Query: 68 GTIIVTQNRNRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLHVYEH 127
I+ ++ R+D YSL +S L ND+G Y I + + + +E+ L VYE
Sbjct: 95 NVTIMVKSY-LGRLDITKWSYSLCISNLTLNDAGSYKAQINQRNFEVTTEEEFTLFVYEQ 153
Query: 128 LSKPKVTM-GLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRW 186
L +P+VTM ++ ++N +C L C ++ E+ V+Y+W A+ES+ GSIL +S
Sbjct: 154 LQEPQVTMKSVKVSENFSCNITLMCSVKGAEKSVLYSWTPREPHASESNGGSILTVSRTP 213
Query: 187 GESDMTFICVARNPVSRNFSSPILARKLC--EGAADDPDSSMVLLCLLLVPLLLSL 240
+ D+ +IC A+NPVS+ S P+ + C GA+ + ++ +L P+ L L
Sbjct: 214 CDPDLPYICTAQNPVSQRSSLPVHVGQFCTDPGASRGGTTGETVVGVLGEPVTLPL 269
>gi|16418407 activating NK receptor precursor [Homo sapiens]
Length = 331
Score = 114 bits (285), Expect = 1e-25
Identities = 92/315 (29%), Positives = 150/315 (47%), Gaps = 25/315 (7%)
Query: 31 GSVGGAVTFPLKSKV-KQVDSIVWTFNTTPLVTIQP---EGGTIIVTQNRNRERVDFPDG 86
G +G +VT PL+ ++V+ I W FN T L I P + I VT + +R++F
Sbjct: 32 GILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS 91
Query: 87 GYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLHVYEHLSKPKVTMGLQSNKNGTCV 146
YSL+LS LK D+G Y I + + + S+ Y L + L +VT Q +N TC
Sbjct: 92 -YSLQLSNLKMEDTGSYRAQISTKTSAKLSS--YTLRILRQLRNIQVTNHSQLFQNMTCE 148
Query: 147 TNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWG-ESDMTFICVARNPVSRNF 205
+LTC +E +++V + W+ALG + N L +SW S+ + C+A N VS N
Sbjct: 149 LHLTCSVEDADDNVSFRWEALGNTLSSQPN---LTVSWDPRISSEQDYTCIAENAVS-NL 204
Query: 206 SSPILARKLCEGA-ADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKR 264
S + A+KLCE D+ M+L + + ++ +L L + +R+ + +
Sbjct: 205 SFSVSAQKLCEDVKIQYTDTKMILFMVSGICIVFGFIILLLLVLRKRRDSLSLSTQRTQG 264
Query: 265 VDICRETPNICPHSGENTEYDTIPHTNRT----ILKEDPANTVYSTVEIPKKMENPHSLL 320
+ R + NT Y ++ H+NR +E+ T+YST+ HS
Sbjct: 265 PESARNLEYVSVSPTNNTVYASVTHSNRETEIWTPRENDTITIYSTIN--------HSKE 316
Query: 321 TMPDTPRLFAYENVI 335
+ P R A +NV+
Sbjct: 317 SKPTFSRATALDNVV 331
>gi|4506969 signaling lymphocytic activation molecule family member
1 [Homo sapiens]
Length = 335
Score = 59.7 bits (143), Expect = 4e-09
Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 35/262 (13%)
Query: 79 ERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSS-SLQQPSTQEYVLHVYEHLSKPKVTMGL 137
+R F +L + + +K D G Y + + + S+Q+ Q L +YE +S P++ +
Sbjct: 94 DRYKFYLENLTLGIRESRKEDEGWYLMTLEKNVSVQRFCLQ---LRLYEQVSTPEIKVLN 150
Query: 138 QSNKNGTCVTNLTCCMEHGEEDVIYTW--KALGQAANESHNGSILPISWRWGESDMTFIC 195
++ +NGTC L C +E G+ V Y+W KA N +++ +L ++ +D +IC
Sbjct: 151 KTQENGTCTLILGCTVEKGDH-VAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYIC 209
Query: 196 VARNPVSRNFS--SPILARKLCEGAADDPDSSMVLLCLL-LVPLLLSLFVLGLFLWFLKR 252
NP+S N SP G DP + L+ ++ + ++ + L +R
Sbjct: 210 TVSNPISNNSQTFSP------WPGCRTDPSETKPWAVYAGLLGGVIMILIMVVILQLRRR 263
Query: 253 ERQEEY--IEEKKRVDICRETPNICPHSGENTEYDTIPHTNRTILKEDPANTVY--STVE 308
+ Y EKK + I + P + D+ P +DP T+Y +T
Sbjct: 264 GKTNHYQTTVEKKSLTIYAQVQKPGP---LQKKLDSFP-------AQDPCTTIYVAATEP 313
Query: 309 IPKKMENPHSL-----LTMPDT 325
+P+ ++ +S+ +T+P++
Sbjct: 314 VPESVQETNSITVYASVTLPES 335
>gi|7706529 CD244 natural killer cell receptor 2B4 [Homo sapiens]
Length = 365
Score = 57.8 bits (138), Expect = 1e-08
Identities = 70/331 (21%), Positives = 133/331 (40%), Gaps = 30/331 (9%)
Query: 1 MAGSPTCLTLIYILWQLTGSAASGPVKELVGSVGGAVTFPLKSKVKQVDSIVWTFNTTPL 60
M G L L+ +L G G +V G + S +VDSI W P
Sbjct: 1 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWK-KLLPS 59
Query: 61 VT-----IQPEGGTIIVTQNRNRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQP 115
++ E G++ N + +R F SL + ++ DSG+Y + + S S +
Sbjct: 60 QNGFHHILKWENGSL--PSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSIS-GKV 116
Query: 116 STQEYVLHVYEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTW----KALGQAA 171
T + + V++ + KP++ + G C L+C + + +V Y W K + A
Sbjct: 117 QTATFQVFVFDKVEKPRLQGQGKILDRGRCQVALSCLVSR-DGNVSYAWYRGSKLIQTAG 175
Query: 172 NESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMVLLCL 231
N ++ + I+ T+ C NPVS S + + C+ A + L+ +
Sbjct: 176 NLTYLDEEVDIN-----GTHTYTCNVSNPVSWE-SHTLNLTQDCQNAHQEFRFWPFLVII 229
Query: 232 LLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPH----------SGEN 281
+++ L + +W KR+ ++ K+ + I + ++ G +
Sbjct: 230 VILSALFLGTLACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGS 289
Query: 282 TEYDTIPHTNRTILKEDPANTVYSTVEIPKK 312
T Y I + ++PA T+YS ++ +K
Sbjct: 290 TIYSMIQSQSSAPTSQEPAYTLYSLIQPSRK 320
>gi|9910342 SLAM family member 8 [Homo sapiens]
Length = 285
Score = 53.9 bits (128), Expect = 2e-07
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 13/168 (7%)
Query: 89 SLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLHVYEHLSKPKVTMGLQSNKNG----T 144
SL+L L+ DSG + V + + QP TQ L VY+ + +P V + + ++ T
Sbjct: 87 SLELGPLESGDSGNFSV-LMVDTRGQPWTQTLQLKVYDAVPRPVVQVFIAVERDAQPSKT 145
Query: 145 CVTNLTCCMEHGEEDVIYTWK--ALGQAANESHN----GSILPISWRWGESDMTFICVAR 198
C L+C + E + Y+W+ E H+ G +L IS G+ D+ + C+
Sbjct: 146 CQVFLSCWAPNISE-ITYSWRRETTMDFGMEPHSLFTDGQVLSISLGPGDRDVAYSCIVS 204
Query: 199 NPVSRNFSSPILARKLCEGAADDPDSSMVLLCLLLVPLLLSLFVLGLF 246
NPVS + ++ + C A +S + L++VP+ L L ++ LF
Sbjct: 205 NPVSWDLAT-VTPWDSCHHEAAPGKASYKDVLLVVVPVSLLLMLVTLF 251
>gi|75991709 lymphocyte antigen 9 isoform b [Homo sapiens]
Length = 193
Score = 52.4 bits (124), Expect = 6e-07
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 9 TLIYILWQLTGSAASGPVKELVGSVGGAVTFPLKSKVK-QVDSIVWTFNTTPLVTIQPEG 67
+L+++L L S + G +GG+VT PL V ++++++W L +P+
Sbjct: 35 SLLFLLMGLRASGKDSAPTVVSGILGGSVTLPLNISVDTEIENVIWIGPKNALAFARPKE 94
Query: 68 GTIIVTQNRNRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLHVY 125
I+ ++ R+D YSL +S L ND+G Y I + + + +E+ L VY
Sbjct: 95 NVTIMVKSY-LGRLDITKWSYSLCISNLTLNDAGSYKAQINQRNFEVTTEEEFTLFVY 151
>gi|226342992 SLAM family member 9 isoform 2 [Homo sapiens]
Length = 198
Score = 50.1 bits (118), Expect = 3e-06
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 12/117 (10%)
Query: 14 LWQLTGSAASGPVKELVGSVGGAVTFPLKSKV-KQVDSIVWTFNTTPLVTIQP--EG--G 68
LW+ GS +E+V + +++ PL+ ++V++I+W+ + + L T+ P EG
Sbjct: 21 LWRWCGS------EEVVAVLQESISLPLEIPPDEEVENIIWSSHKS-LATVVPGKEGHPA 73
Query: 69 TIIVTQNRNRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLHVY 125
TI+VT + +V F D YSL +S L DSG+Y + + Q + Q+Y + VY
Sbjct: 74 TIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLRTSQISTMQQYNICVY 130
>gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens]
Length = 416
Score = 49.3 bits (116), Expect = 5e-06
Identities = 71/310 (22%), Positives = 122/310 (39%), Gaps = 25/310 (8%)
Query: 17 LTGSAASGPVKELVGSVGGAVTFPLKSKVKQVDSIV--WTFNTTPLVTIQPEGGTIIVTQ 74
L G + PV+ + G+VG + ++ D V W VT+ GT ++
Sbjct: 31 LEGVNITSPVRLIHGTVGKSALLSVQYSSTSSDRPVVKWQLKRDKPVTVVQSIGTEVIGT 90
Query: 75 NRN--RERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLHVYEHLSKPK 132
R R+R+ + G SL LS L+ D G Y V I + + L V +S+P+
Sbjct: 91 LRPDYRDRIRLFENG-SLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQ 149
Query: 133 VTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAA-NESH-----NGSILPISWRW 186
V + + + L C E+G + YTW G+ N+S + +L I+
Sbjct: 150 VLVASTTVLELSEAFTLNCSHENGTKPS-YTWLKDGKPLLNDSRMLLSPDQKVLTITRVL 208
Query: 187 GESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMVLLCLLLVPLLLSLFVLGLF 246
E D + C+ NP+S+ S P+ SS+ ++ LL V
Sbjct: 209 MEDDDLYSCMVENPISQGRSLPVKITVYRR-------SSLYIILSTGGIFLLVTLVTVCA 261
Query: 247 LWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDTIPHTNRTILKEDPANTVYST 306
W + +Q++ ++ + + + P E DT+P + K A +
Sbjct: 262 CWKPSKRKQKKLEKQNSLEYMDQNDDRLKP------EADTLPRSGEQERKNPMALYILKD 315
Query: 307 VEIPKKMENP 316
+ P+ ENP
Sbjct: 316 KDSPETEENP 325
>gi|156071472 CD2 molecule [Homo sapiens]
Length = 351
Score = 42.4 bits (98), Expect = 6e-04
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 39/178 (21%)
Query: 89 SLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLHVYEHLSKPKVTMGLQSNKNGTCV-T 147
+LK+ LK +D IY V IY + + + + L + E +SKPK++ TC+ T
Sbjct: 91 TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINT 142
Query: 148 NLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWR-----WGES-DMTFICVARNPV 201
LTC + +G + + N +G L +S R W S F C A N V
Sbjct: 143 TLTCEVMNGTDPEL----------NLYQDGKHLKLSQRVITHKWTTSLSAKFKCTAGNKV 192
Query: 202 SRNFS-SPILARKLCEGAADDPDSSMVLLCLLLV---PLLLSLFVLGLFLWFLKRERQ 255
S+ S P+ P+ + + ++ + LL +FV L + KR++Q
Sbjct: 193 SKESSVEPVSC----------PEKGLDIYLIIGICGGGSLLMVFVALLVFYITKRKKQ 240
>gi|68161541 carcinoembryonic antigen-related cell adhesion molecule
1 isoform 2 precursor [Homo sapiens]
Length = 464
Score = 41.6 bits (96), Expect = 0.001
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 32/151 (21%)
Query: 75 NRNRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSL-QQPSTQEYVLHVYEHLSKPKV 133
N RE + +P+ SL + + +ND+G Y + + S L + +T ++ HVY L KP +
Sbjct: 95 NSGRETI-YPNA--SLLIQNVTQNDTGFYTLQVIKSDLVNEEATGQF--HVYPELPKPSI 149
Query: 134 TMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRW----GES 189
+ + TC E +D Y W N LP+S R G
Sbjct: 150 SSNNSNPVEDKDAVAFTC--EPETQDTTYLWWI---------NNQSLPVSPRLQLSNGNR 198
Query: 190 DMTFICVARN-----------PVSRNFSSPI 209
+T + V RN PVS N S P+
Sbjct: 199 TLTLLSVTRNDTGPYECEIQNPVSANRSDPV 229
>gi|19923195 carcinoembryonic antigen-related cell adhesion molecule
1 isoform 1 precursor [Homo sapiens]
Length = 526
Score = 41.6 bits (96), Expect = 0.001
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 32/151 (21%)
Query: 75 NRNRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSL-QQPSTQEYVLHVYEHLSKPKV 133
N RE + +P+ SL + + +ND+G Y + + S L + +T ++ HVY L KP +
Sbjct: 95 NSGRETI-YPNA--SLLIQNVTQNDTGFYTLQVIKSDLVNEEATGQF--HVYPELPKPSI 149
Query: 134 TMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRW----GES 189
+ + TC E +D Y W N LP+S R G
Sbjct: 150 SSNNSNPVEDKDAVAFTC--EPETQDTTYLWWI---------NNQSLPVSPRLQLSNGNR 198
Query: 190 DMTFICVARN-----------PVSRNFSSPI 209
+T + V RN PVS N S P+
Sbjct: 199 TLTLLSVTRNDTGPYECEIQNPVSANRSDPV 229
Score = 29.6 bits (65), Expect = 4.0
Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 128 LSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANE----SHNGSILPIS 183
++KP++ + NLTC + + +K ++E S + L I+
Sbjct: 325 VAKPQIKASKTTVTGDKDSVNLTCSTNDTGISIRWFFKNQSLPSSERMKLSQGNTTLSIN 384
Query: 184 WRWGESDMTFICVARNPVSRNFSSPIL------ARKLCEGAADDPDSSMVLLCLLLVPLL 237
E T+ C NP+S+N S PI+ A G + + +V+ + LV L+
Sbjct: 385 PVKREDAGTYWCEVFNPISKNQSDPIMLNVNYNALPQENGLSPGAIAGIVIGVVALVALI 444
Query: 238 LSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENT 282
L FL F K R + + D+ P++ H+ +++
Sbjct: 445 --AVALACFLHFGKTGRASD------QRDLTEHKPSVSNHTQDHS 481
>gi|4503173 coxsackie virus and adenovirus receptor precursor [Homo
sapiens]
Length = 365
Score = 39.7 bits (91), Expect = 0.004
Identities = 42/226 (18%), Positives = 87/226 (38%), Gaps = 19/226 (8%)
Query: 82 DFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLHVYEHLSKPKVTMGLQSNK 141
D G S+ ++ L+ +D G Y + + P +H+ + + ++
Sbjct: 97 DLKSGDASINVTNLQLSDIGTYQCKVKKA----PGVANKKIHLVVLVKPSGARCYVDGSE 152
Query: 142 NGTCVTNLTCCMEHGEEDVIYTWKALGQAAN------ESHNGSILPISWRWGESDMTFIC 195
+ C + G + Y W+ L + S++ + E T+ C
Sbjct: 153 EIGSDFKIKCEPKEGSLPLQYEWQKLSDSQKMPTSWLAEMTSSVISVKNASSEYSGTYSC 212
Query: 196 VARNPVSRNFSSPILARKLCEGAADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQ 255
RN V + + L P + L+ ++ LL+L ++GL ++ +++R+
Sbjct: 213 TVRNRVGSD-------QCLLRLNVVPPSNKAGLIAGAIIGTLLALALIGLIIFCCRKKRR 265
Query: 256 EEYIEEKKRVDICRETPNICPHSGENTEYDTIPHTNRTILKEDPAN 301
EE E++ DI + P P S +T I + ++ P+N
Sbjct: 266 EEKYEKEVHHDIREDVPP--PKSRTSTARSYIGSNHSSLGSMSPSN 309
>gi|40255013 carcinoembryonic antigen-related cell adhesion molecule
6 (non-specific cross reacting antigen) [Homo sapiens]
Length = 344
Score = 39.7 bits (91), Expect = 0.004
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 89 SLKLSKLKKNDSGIYYVGIYSSSL-QQPSTQEYVLHVYEHLSKPKVTMGLQSNKNGTCVT 147
SL + + +ND+G Y + + S L + +T ++ HVY L KP ++ +
Sbjct: 106 SLLIQNVTQNDTGFYTLQVIKSDLVNEEATGQF--HVYPELPKPSISSNNSNPVEDKDAV 163
Query: 148 NLTCCMEHGEEDVIYTWKALGQAANES-----HNGSILPISWRWGESDM-TFICVARNPV 201
TC E ++ Y W GQ+ S NG++ +D ++ C +NP
Sbjct: 164 AFTC--EPEVQNTTYLWWVNGQSLPVSPRLQLSNGNMTLTLLSVKRNDAGSYECEIQNPA 221
Query: 202 SRNFSSPI 209
S N S P+
Sbjct: 222 SANRSDPV 229
>gi|13376115 adipocyte-specific adhesion molecule [Homo sapiens]
Length = 373
Score = 37.4 bits (85), Expect = 0.019
Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 25/201 (12%)
Query: 82 DFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLHVYEHLSKPKVTMGLQSNK 141
+F G SL++ LK +D G Y + +S S +L V SKPK + + +
Sbjct: 88 NFLAGDASLQIEPLKPSDEGRYTCKVKNSGRYVWS--HVILKVLVRPSKPKCELEGELTE 145
Query: 142 NGTCVTNLTCCMEHGEEDVIYTWKALGQAANE------------SHNGSILPISWRWGES 189
G+ +T L C G E ++Y W+ + + E +H G +L + S
Sbjct: 146 -GSDLT-LQCESSSGTEPIVYYWQRIREKEGEDERLPPKSRIDYNHPGRVLLQNLTMSYS 203
Query: 190 DMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMVLLCLLLVPLLLSLFVLGLFLWF 249
+ + C A N + + + + S+ ++ + ++ ++ L +W
Sbjct: 204 GL-YQCTAGNEAGKESCVVRVTVQYVQ--------SIGMVAGAVTGIVAGALLIFLLVWL 254
Query: 250 LKRERQEEYIEEKKRVDICRE 270
L R + +E EE++R + RE
Sbjct: 255 LIRRKDKERYEEEERPNEIRE 275
>gi|21314600 carcinoembryonic antigen-related cell adhesion molecule
8 [Homo sapiens]
Length = 349
Score = 34.3 bits (77), Expect = 0.16
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 32/149 (21%)
Query: 77 NRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPS-TQEYVLHVYEHLSKPKVTM 135
NRE + +P+ SL + + +ND+G Y + + +L T ++ +H KP ++
Sbjct: 97 NRETI-YPNA--SLLMRNVTRNDTGSYTLQVIKLNLMSEEVTGQFSVH--PETPKPSISS 151
Query: 136 GLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRW----GESDM 191
+ TC E ++ Y W NG LP+S R G +
Sbjct: 152 NNSNPVEDKDAVAFTC--EPETQNTTYLWWV---------NGQSLPVSPRLQLSNGNRTL 200
Query: 192 TFICVARN-----------PVSRNFSSPI 209
T + V RN P S NFS P+
Sbjct: 201 TLLSVTRNDVGPYECEIQNPASANFSDPV 229
>gi|98986445 carcinoembryonic antigen-related cell adhesion molecule
5 preproprotein [Homo sapiens]
Length = 702
Score = 33.5 bits (75), Expect = 0.27
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 11/133 (8%)
Query: 89 SLKLSKLKKNDSGIYYVGIYSSSL-QQPSTQEYVLHVYEHLSKPKVTMGLQSNKNGTCVT 147
SL + + +ND+G Y + + S L + +T ++ VY L KP ++
Sbjct: 106 SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQF--RVYPELPKPSISSNNSKPVEDKDAV 163
Query: 148 NLTCCMEHGEEDVIYTWKALGQAANES-----HNGSILPISWRWGESD-MTFICVARNPV 201
TC E +D Y W Q+ S NG+ + +D ++ C +NPV
Sbjct: 164 AFTC--EPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPV 221
Query: 202 SRNFSSPILARKL 214
S S ++ L
Sbjct: 222 SARRSDSVILNVL 234
Score = 30.8 bits (68), Expect = 1.8
Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 8/126 (6%)
Query: 90 LKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLHVYEHLSKPKVTMGLQSNKNGTCVTNL 149
L +S + + +SG+Y +S+ T + V L KP ++
Sbjct: 462 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAF 521
Query: 150 TCCMEHGEEDVIYTWKALGQAANES-----HNGSILPISWRWGESD-MTFICVARNPVSR 203
TC E ++ Y W GQ+ S NG+ + +D ++C +N VS
Sbjct: 522 TC--EPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSA 579
Query: 204 NFSSPI 209
N S P+
Sbjct: 580 NRSDPV 585
>gi|157805480 pregnancy specific beta-1-glycoprotein 7 precursor
[Homo sapiens]
Length = 419
Score = 33.5 bits (75), Expect = 0.27
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 89 SLKLSKLKKNDSGIYYVGIYSSSLQQPS-TQEYVLHVYEHLSKPKVTMGLQSNKNGTCVT 147
SL + + + D+G Y + I T + +Y KP ++ + + T
Sbjct: 106 SLLIQNVTQEDTGSYTLHIIKRGDGTGGVTGRFTFTLYLETPKPSISSSNFNPREATEAV 165
Query: 148 NLTCCMEHGEEDVIYTWKALGQAANESHNGSILPIS---WRWGESDMT---FICVARNPV 201
LTC E D Y W GQ+ +H+ + + + +G ++ T + C RNPV
Sbjct: 166 ILTCDPE--TPDASYLWWMNGQSLPMTHSLQLSETNRTLYLFGVTNYTAGPYECEIRNPV 223
Query: 202 SRNFSSPI 209
S + S P+
Sbjct: 224 SASRSDPV 231
>gi|45594240 limbic system-associated membrane protein [Homo
sapiens]
Length = 338
Score = 33.1 bits (74), Expect = 0.36
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 6/116 (5%)
Query: 88 YSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLHVYEHLSKPKVTMGLQSNKNGTCVT 147
YSL++ K+ D G Y + + + S ++ V +S + + N T V
Sbjct: 94 YSLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPKISNISSDVTVNEGSNVTLV- 152
Query: 148 NLTCCMEHGEEDVIYTWKALGQAANE-SHNGSILPISWRWGESDMTFICVARNPVS 202
CM +G + + TW+ L E L I E + C A N VS
Sbjct: 153 ----CMANGRPEPVITWRHLTPTGREFEGEEEYLEILGITREQSGKYECKAANEVS 204
>gi|5729993 protein tyrosine phosphatase, receptor type, E isoform 1
precursor [Homo sapiens]
Length = 700
Score = 32.3 bits (72), Expect = 0.61
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 221 DPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEEYI 259
DP +S LL LL+PLLL L VL L +F + +Q + +
Sbjct: 40 DPGASQPLLAWLLLPLLLLLLVLLLAAYFFRFRKQRKAV 78
>gi|140560917 myomesin 1 isoform b [Homo sapiens]
Length = 1589
Score = 32.0 bits (71), Expect = 0.80
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 20/115 (17%)
Query: 79 ERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSS--------SLQQPSTQEYVLHVYEHLSK 130
E+ DF DG +L +++ K D+GIY V + L + +E ++ V + ++
Sbjct: 1306 EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIAL 1365
Query: 131 PKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWR 185
+ +QS G L + + ED+ W SHNGS + S R
Sbjct: 1366 SATDLKIQSTAEG---IQLYSFVTYYVEDLKVNW---------SHNGSAIRYSDR 1408
>gi|140560919 myomesin 1 isoform a [Homo sapiens]
Length = 1685
Score = 32.0 bits (71), Expect = 0.80
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 20/115 (17%)
Query: 79 ERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSS--------SLQQPSTQEYVLHVYEHLSK 130
E+ DF DG +L +++ K D+GIY V + L + +E ++ V + ++
Sbjct: 1402 EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIAL 1461
Query: 131 PKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWR 185
+ +QS G L + + ED+ W SHNGS + S R
Sbjct: 1462 SATDLKIQSTAEG---IQLYSFVTYYVEDLKVNW---------SHNGSAIRYSDR 1504
>gi|169203189 PREDICTED: hypothetical protein LOC338667 [Homo
sapiens]
Length = 859
Score = 31.6 bits (70), Expect = 1.0
Identities = 50/178 (28%), Positives = 72/178 (40%), Gaps = 53/178 (29%)
Query: 25 PVKELV---GSVGGAVTFPLKSKVKQVDSIVWTFNTTPLVTIQPEGGTIIVTQNRNRERV 81
PV+E+V G GG+V S + ++W+F TPL ++ P + VT
Sbjct: 37 PVEEVVSVQGVRGGSVELACGSGPAPL-LVLWSF--TPLGSLVPR--PVAVT-------- 83
Query: 82 DFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQE--------YVLHV--------Y 125
DG +SK++ S + V + +SSL E VLHV Y
Sbjct: 84 ---DGA----MSKVEAIASALGVVSLRNSSLVLGELHEGARGHFLCQVLHVAGGQLHAAY 136
Query: 126 EHL--------SKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTW-----KALGQA 170
HL SKP+V + S G V TC + G E V + W + LG+A
Sbjct: 137 SHLTLAVLVPVSKPQVRLSNPSPVEGASVV-ATCAVREGTEPVTFAWQHRAPRGLGEA 193
>gi|169203683 PREDICTED: hypothetical protein LOC338667 [Homo
sapiens]
Length = 859
Score = 31.6 bits (70), Expect = 1.0
Identities = 50/178 (28%), Positives = 72/178 (40%), Gaps = 53/178 (29%)
Query: 25 PVKELV---GSVGGAVTFPLKSKVKQVDSIVWTFNTTPLVTIQPEGGTIIVTQNRNRERV 81
PV+E+V G GG+V S + ++W+F TPL ++ P + VT
Sbjct: 37 PVEEVVSVQGVRGGSVELACGSGPAPL-LVLWSF--TPLGSLVPR--PVAVT-------- 83
Query: 82 DFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQE--------YVLHV--------Y 125
DG +SK++ S + V + +SSL E VLHV Y
Sbjct: 84 ---DGA----MSKVEAIASALGVVSLRNSSLVLGELHEGARGHFLCQVLHVAGGQLHAAY 136
Query: 126 EHL--------SKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTW-----KALGQA 170
HL SKP+V + S G V TC + G E V + W + LG+A
Sbjct: 137 SHLTLAVLVPVSKPQVRLSNPSPVEGASVV-ATCAVREGTEPVTFAWQHRAPRGLGEA 193
>gi|169202109 PREDICTED: hypothetical protein LOC338667 [Homo
sapiens]
Length = 859
Score = 31.6 bits (70), Expect = 1.0
Identities = 50/178 (28%), Positives = 72/178 (40%), Gaps = 53/178 (29%)
Query: 25 PVKELV---GSVGGAVTFPLKSKVKQVDSIVWTFNTTPLVTIQPEGGTIIVTQNRNRERV 81
PV+E+V G GG+V S + ++W+F TPL ++ P + VT
Sbjct: 37 PVEEVVSVQGVRGGSVELACGSGPAPL-LVLWSF--TPLGSLVPR--PVAVT-------- 83
Query: 82 DFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQE--------YVLHV--------Y 125
DG +SK++ S + V + +SSL E VLHV Y
Sbjct: 84 ---DGA----MSKVEAIASALGVVSLRNSSLVLGELHEGARGHFLCQVLHVAGGQLHAAY 136
Query: 126 EHL--------SKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTW-----KALGQA 170
HL SKP+V + S G V TC + G E V + W + LG+A
Sbjct: 137 SHLTLAVLVPVSKPQVRLSNPSPVEGASVV-ATCAVREGTEPVTFAWQHRAPRGLGEA 193
>gi|37700254 triggering receptor expressed on myeloid cells-like 4
[Homo sapiens]
Length = 200
Score = 31.2 bits (69), Expect = 1.4
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 65 PEGGTIIVTQNRNRERV--------DFPDGGY-SLKLSKLKKNDSGIYYVGIYSSS 111
P T++VT ++ V D P+ G+ ++ + +L +NDSG Y+ GIY++S
Sbjct: 60 PSRCTLLVTSSKPWTAVQKSHYTIWDKPNAGFFNITMIQLTQNDSGFYWCGIYNAS 115
>gi|14149981 transmembrane protein 117 [Homo sapiens]
Length = 514
Score = 31.2 bits (69), Expect = 1.4
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 224 SSMVLLCLLLVPLLLSLFVLGLFLW----FLKRERQEEYIEEKKRVDICRETPNICPHSG 279
+S+ + CL VP L++ G F+W FLK E + E ++K + R++P+
Sbjct: 388 ASLDVKCLAFVPSLIAFVWFGFFIWFFGRFLKNEPRMEN-QDKTYTRMKRKSPS------ 440
Query: 280 ENTEYDTIPHTNRTILKEDPAN 301
E+++ I N EDP N
Sbjct: 441 EHSKDMGITRENTQASVEDPLN 462
>gi|109240546 pregnancy specific beta-1-glycoprotein 3 [Homo
sapiens]
Length = 428
Score = 31.2 bits (69), Expect = 1.4
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 9/128 (7%)
Query: 89 SLKLSKLKKNDSGIYYVGIYS-SSLQQPSTQEYVLHVYEHLSKPKVTMGLQSNKNGTCVT 147
SL + + + D+G Y + I + T + +Y KP ++ +
Sbjct: 106 SLLIQNVTREDAGSYTLHIVKRGDGTRGETGHFTFTLYLETPKPSISSSNLYPREDMEAV 165
Query: 148 NLTCCMEHGEEDVIYTWKALGQAANESHNGSILPIS---WRWGESDMT---FICVARNPV 201
+LTC E D Y W GQ+ +H+ + + +G + T + C RNPV
Sbjct: 166 SLTCDPE--TPDASYLWWMNGQSLPMTHSLQLSKNKRTLFLFGVTKYTAGPYECEIRNPV 223
Query: 202 SRNFSSPI 209
S + S P+
Sbjct: 224 SASRSDPV 231
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,969,981
Number of Sequences: 37866
Number of extensions: 645979
Number of successful extensions: 1863
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1790
Number of HSP's gapped (non-prelim): 100
length of query: 335
length of database: 18,247,518
effective HSP length: 103
effective length of query: 232
effective length of database: 14,347,320
effective search space: 3328578240
effective search space used: 3328578240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.