Guide to the Human Genome
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Name: MYOM1 Sequence: fasta or formatted (1589aa) NCBI GI: 140560917
Description:

myomesin 1 isoform b

Referenced in:

Muscle

Other entries for this name:
alt prot [1685aa] myomesin 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6        121           3
 C cysteine            1.6         25           1
 D aspartate           5.0         80           3
 E glutamate           8.8        140           3
 F phenylalanine       3.3         53           1
 G glycine             6.6        105           2
 H histidine           2.1         33           1
 I isoleucine          4.7         74           3
 K lysine              8.2        131           2
 L leucine             6.3        100           3
 M methionine          1.5         24           2
 N asparagine          3.3         52           3
 P proline             4.5         71           3
 Q glutamine           3.6         57           3
 R arginine            4.9         78           2
 S serine              8.9        142           3
 T threonine           5.5         87           2
 V valine              7.9        126           3
 W tryptophan          1.7         27           1
 Y tyrosine            4.0         63           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myomesin 1 isoform b 
MYOM1                 0.534   myomesin 1 isoform a 
MYOM2                 0.414   myomesin 2 
MYOM3                 0.316   myomesin family, member 3 
TTN                   0.076   titin isoform N2-A 
TTN                   0.076   titin isoform novex-2 
TTN                   0.076   titin isoform novex-1 
TTN                   0.076   titin isoform N2-B 
IGSF22                0.052   immunoglobulin superfamily, member 22 
IGFN1                 0.036   immunoglobulin-like and fibronectin type III domain...
MYBPC3                0.035   myosin binding protein C, cardiac 
MYBPC1                0.034   myosin binding protein C, slow type isoform 4 
MYBPC1                0.034   myosin binding protein C, slow type isoform 2 
MYBPC1                0.034   myosin binding protein C, slow type isoform 1 
MYBPC2                0.032   myosin binding protein C, fast type 
MYBPC1                0.031   myosin binding protein C, slow type isoform 3 
SDK2                  0.030   sidekick 2 
PTPRD                 0.028   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.028   protein tyrosine phosphatase, receptor type, D isofo...
PTPRS                 0.028   protein tyrosine phosphatase, receptor type, sigma ...
PTPRD                 0.027   protein tyrosine phosphatase, receptor type, D isofor...
FNDC3A                0.027   fibronectin type III domain containing 3A isoform 1...
FNDC3A                0.027   fibronectin type III domain containing 3A isoform 2...
PTPRF                 0.027   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.027   protein tyrosine phosphatase, receptor type, F isof...
DCC                   0.026   deleted in colorectal carcinoma 
NEO1                  0.026   neogenin homolog 1 
PTPRS                 0.026   protein tyrosine phosphatase, receptor type, sigma ...
FNDC3B                0.025   fibronectin type III domain containing 3B 
FNDC3B                0.025   fibronectin type III domain containing 3B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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