Guide to the Human Genome
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Name: SLAMF6 Sequence: fasta or formatted (331aa) NCBI GI: 16418407
Description:

activating NK receptor precursor

Referenced in:

Hematopoiesis and Erythrocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         13           1
 C cysteine            1.8          6           1
 D aspartate           3.3         11           2
 E glutamate           5.7         19           1
 F phenylalanine       4.8         16           1
 G glycine             3.3         11           1
 H histidine           1.8          6           1
 I isoleucine          5.7         19           2
 K lysine              3.9         13           1
 L leucine            11.2         37           4
 M methionine          1.8          6           1
 N asparagine          6.6         22           2
 P proline             3.9         13           1
 Q glutamine           4.8         16           1
 R arginine            4.5         15           2
 S serine             12.1         40           2
 T threonine           9.4         31           1
 V valine              7.3         24           2
 W tryptophan          1.5          5           1
 Y tyrosine            2.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   activating NK receptor precursor 
CD84                  0.169   CD84 molecule 
SLAMF7                0.141   SLAM family member 7 
SLAMF9                0.128   SLAM family member 9 isoform 1 
LY9                   0.125   lymphocyte antigen 9 isoform a 
SLAMF9                0.065   SLAM family member 9 isoform 2 
LY9                   0.057   lymphocyte antigen 9 isoform b 
SLAMF1                0.051   signaling lymphocytic activation molecule family memb...
CD244                 0.046   CD244 natural killer cell receptor 2B4 
PVR                   0.036   poliovirus receptor isoform delta 
PVR                   0.036   poliovirus receptor isoform gamma 
PVR                   0.036   poliovirus receptor isoform beta 
PVR                   0.036   poliovirus receptor isoform alpha 
ALCAM                 0.028   activated leukocyte cell adhesion molecule 
ASAM                  0.028   adipocyte-specific adhesion molecule 
CEACAM21              0.028   carcinoembryonic antigen-related cell adhesion mole...
CEACAM21              0.027   carcinoembryonic antigen-related cell adhesion molec...
FCRL1                 0.024   Fc receptor-like 1 isoform 3 precursor 
FCRL1                 0.024   Fc receptor-like 1 isoform 2 precursor 
FCRL1                 0.024   Fc receptor-like 1 isoform 1 precursor 
TTN                   0.024   titin isoform N2-A 
FCRL2                 0.022   Fc receptor-like 2 precursor 
SLAMF9                0.022   SLAM family member 9 isoform 3 
IGSF11                0.019   immunoglobulin superfamily, member 11 isoform a [Hom...
FCRL3                 0.017   Fc receptor-like 3 precursor 
IGSF11                0.017   immunoglobulin superfamily, member 11 isoform b [Hom...
LRRC4C                0.016   netrin-G1 ligand 
SIGLEC12              0.014   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC12              0.014   sialic acid binding immunoglobulin-like lectin-like ...
TTN                   0.014   titin isoform novex-3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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