Guide to the Human Genome
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Name: SLAMF7 Sequence: fasta or formatted (335aa) NCBI GI: 19923572
Description:

SLAM family member 7

Referenced in:

Hematopoiesis and Erythrocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         13           2
 C cysteine            2.7          9           2
 D aspartate           3.9         13           2
 E glutamate           6.9         23           2
 F phenylalanine       2.7          9           1
 G glycine             6.3         21           2
 H histidine           2.1          7           1
 I isoleucine          6.0         20           2
 K lysine              5.7         19           2
 L leucine            10.7         36           3
 M methionine          2.1          7           1
 N asparagine          5.1         17           1
 P proline             6.3         21           1
 Q glutamine           3.0         10           2
 R arginine            3.9         13           1
 S serine              8.4         28           3
 T threonine           7.8         26           2
 V valine              7.5         25           1
 W tryptophan          1.8          6           1
 Y tyrosine            3.6         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SLAM family member 7 
CD84                  0.165   CD84 molecule 
SLAMF9                0.147   SLAM family member 9 isoform 1 
LY9                   0.139   lymphocyte antigen 9 isoform a 
SLAMF6                0.134   activating NK receptor precursor 
SLAMF1                0.053   signaling lymphocytic activation molecule family memb...
CD244                 0.050   CD244 natural killer cell receptor 2B4 
SLAMF8                0.044   SLAM family member 8 
LY9                   0.041   lymphocyte antigen 9 isoform b 
SLAMF9                0.038   SLAM family member 9 isoform 2 
HEPACAM               0.036   hepatocyte cell adhesion molecule 
CD2                   0.026   CD2 molecule 
CEACAM1               0.026   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.026   carcinoembryonic antigen-related cell adhesion molec...
CXADR                 0.023   coxsackie virus and adenovirus receptor precursor [Ho...
CEACAM6               0.023   carcinoembryonic antigen-related cell adhesion molec...
ASAM                  0.018   adipocyte-specific adhesion molecule 
CEACAM8               0.014   carcinoembryonic antigen-related cell adhesion molec...
CEACAM5               0.012   carcinoembryonic antigen-related cell adhesion molec...
PSG7                  0.012   pregnancy specific beta-1-glycoprotein 7 precursor ...
LSAMP                 0.012   limbic system-associated membrane protein 
PTPRE                 0.011   protein tyrosine phosphatase, receptor type, E isofor...
MYOM1                 0.011   myomesin 1 isoform b 
MYOM1                 0.011   myomesin 1 isoform a 
LOC338667             0.011   PREDICTED: hypothetical protein LOC338667 
LOC338667             0.011   PREDICTED: hypothetical protein LOC338667 
LOC338667             0.011   PREDICTED: hypothetical protein LOC338667 
TREML4                0.009   triggering receptor expressed on myeloid cells-like ...
TMEM117               0.009   transmembrane protein 117 
PSG3                  0.009   pregnancy specific beta-1-glycoprotein 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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