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Search of human proteins with 195972903
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|195972903 zinc finger protein 385A isoform a [Homo sapiens]
(386 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|195972903 zinc finger protein 385A isoform a [Homo sapiens] 789 0.0
gi|24308079 zinc finger protein 385A isoform c [Homo sapiens] 750 0.0
gi|195972905 zinc finger protein 385A isoform b [Homo sapiens] 559 e-159
gi|13375981 zinc finger protein 385D [Homo sapiens] 336 2e-92
gi|164663778 zinc finger protein 385B isoform 2 [Homo sapiens] 329 3e-90
gi|63029928 zinc finger protein 385B isoform 1 [Homo sapiens] 329 3e-90
gi|164663780 zinc finger protein 385B isoform 3 [Homo sapiens] 325 4e-89
gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens] 268 8e-72
gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens] 268 8e-72
gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens] 268 8e-72
gi|11968019 p53 target zinc finger protein isoform 1 [Homo sapiens] 55 1e-07
gi|23199978 p53 target zinc finger protein isoform 2 [Homo sapiens] 55 1e-07
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 55 1e-07
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 52 1e-06
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 52 1e-06
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 52 1e-06
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 51 2e-06
gi|116256475 zinc finger protein 827 [Homo sapiens] 46 6e-05
gi|156416026 zinc finger protein 219 [Homo sapiens] 46 6e-05
gi|156415998 zinc finger protein 219 [Homo sapiens] 46 6e-05
gi|156415996 zinc finger protein 219 [Homo sapiens] 46 6e-05
gi|13994287 BTE-binding protein 4 [Homo sapiens] 45 1e-04
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 45 1e-04
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 45 1e-04
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 45 1e-04
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 45 1e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 44 2e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 44 2e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 44 2e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 44 2e-04
>gi|195972903 zinc finger protein 385A isoform a [Homo sapiens]
Length = 386
Score = 789 bits (2037), Expect = 0.0
Identities = 386/386 (100%), Positives = 386/386 (100%)
Query: 1 MILGSLSRAGPLPLLRQPPIMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSH 60
MILGSLSRAGPLPLLRQPPIMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSH
Sbjct: 1 MILGSLSRAGPLPLLRQPPIMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSH 60
Query: 61 TFGGPLLKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREP 120
TFGGPLLKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREP
Sbjct: 61 TFGGPLLKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREP 120
Query: 121 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGT 180
GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGT
Sbjct: 121 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGT 180
Query: 181 PAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKA 240
PAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKA
Sbjct: 181 PAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKA 240
Query: 241 YPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRH 300
YPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRH
Sbjct: 241 YPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRH 300
Query: 301 KKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGP 360
KKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGP
Sbjct: 301 KKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGP 360
Query: 361 PITHPLLHPAPGPIRTAHGPILFSPY 386
PITHPLLHPAPGPIRTAHGPILFSPY
Sbjct: 361 PITHPLLHPAPGPIRTAHGPILFSPY 386
>gi|24308079 zinc finger protein 385A isoform c [Homo sapiens]
Length = 366
Score = 750 bits (1937), Expect = 0.0
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 21 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 80
MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ
Sbjct: 1 MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNICQ 60
Query: 81 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP 140
IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP
Sbjct: 61 IRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP 120
Query: 141 VSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRL 200
VSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRL
Sbjct: 121 VSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRL 180
Query: 201 LYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRT 260
LYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRT
Sbjct: 181 LYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRT 240
Query: 261 FHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELP 320
FHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELP
Sbjct: 241 FHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELP 300
Query: 321 KSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGP 380
KSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGP
Sbjct: 301 KSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGP 360
Query: 381 ILFSPY 386
ILFSPY
Sbjct: 361 ILFSPY 366
>gi|195972905 zinc finger protein 385A isoform b [Homo sapiens]
Length = 305
Score = 559 bits (1441), Expect = e-159
Identities = 295/386 (76%), Positives = 297/386 (76%), Gaps = 81/386 (20%)
Query: 1 MILGSLSRAGPLPLLRQPPIMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSH 60
MILGSLSRAGPLPLLRQPPIMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSH
Sbjct: 1 MILGSLSRAGPLPLLRQPPIMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSH 60
Query: 61 TFGGPLLKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREP 120
TFGGPLLKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREP
Sbjct: 61 TFGGPLLKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREP 120
Query: 121 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGT 180
G P+PP G T G+G
Sbjct: 121 --------------------------------------GDPAPP-----GSTPTNGDGVA 137
Query: 181 PAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKA 240
P P GTKHKTILEARSGLGPIKA
Sbjct: 138 PRP--------------------------------------GTKHKTILEARSGLGPIKA 159
Query: 241 YPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRH 300
YPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRH
Sbjct: 160 YPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRH 219
Query: 301 KKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGP 360
KKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGP
Sbjct: 220 KKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGP 279
Query: 361 PITHPLLHPAPGPIRTAHGPILFSPY 386
PITHPLLHPAPGPIRTAHGPILFSPY
Sbjct: 280 PITHPLLHPAPGPIRTAHGPILFSPY 305
>gi|13375981 zinc finger protein 385D [Homo sapiens]
Length = 395
Score = 336 bits (862), Expect = 2e-92
Identities = 196/395 (49%), Positives = 243/395 (61%), Gaps = 13/395 (3%)
Query: 1 MILGSLSRAGPLPLLRQPPI--MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVL 58
M G ++ LP L +PP +QP LD+K LPFPL+ A + LF N++ MDP+QKAV+
Sbjct: 5 MYFGGTCQSPALPALVRPPAPPLQPSLDIKPFLPFPLDTAAAVNLFPNFNAMDPIQKAVI 64
Query: 59 SHTFGGPLLKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVR 118
+HTFG PL ++ +ISCNICQ+RFNS SQA AHYKG +HA+++K +EA K + + +
Sbjct: 65 NHTFGVPLPHRRKQIISCNICQLRFNSDSQAAAHYKGTKHAKKLKALEAMKNKQKSVTAK 124
Query: 119 EPGDPAPPGSTPTNGDGVAPRPVSMENGLG-PAPGSPEKQPGSPSPPSIPETGQGVTKGE 177
D A T + + + G PA + S E V K
Sbjct: 125 ---DSAKTTFTSITTNTINTSSDKTDGTAGTPAISTTTTVEIRKSSVMTTEITSKVEKSP 181
Query: 178 GGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGP 237
+S P ++ EEEKAKRLLYC+LCKVAVNS SQLEAHN GTKHKT+LEAR+G G
Sbjct: 182 TTATGNSSCP-STETEEEKAKRLLYCSLCKVAVNSASQLEAHNSGTKHKTMLEARNGSGT 240
Query: 238 IKAYPRLGPPTPG---EPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGK-P 293
IKA+PR G G + Q++TFHCEIC+V VNSE QLKQHISSRRH+D AGK P
Sbjct: 241 IKAFPRAGVKGKGPVNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHKDRAAGKPP 300
Query: 294 NPLLSRHKK-SRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAA-AAGSPLSLRPA 351
P S + K + A L L FSKE K LA +LP+PLA AA AA A SP SLR A
Sbjct: 301 KPKYSPYNKLQKTAHPLGVKLVFSKEPSKPLAPRILPNPLAAAAAAAAVAVSSPFSLRTA 360
Query: 352 PAAPLLQGPPITHPLLHPAPGPIRTAHGPILFSPY 386
PAA L Q + LL PAPGPIRTAH P+LF+PY
Sbjct: 361 PAATLFQTSALPPALLRPAPGPIRTAHTPVLFAPY 395
>gi|164663778 zinc finger protein 385B isoform 2 [Homo sapiens]
Length = 395
Score = 329 bits (843), Expect = 3e-90
Identities = 195/403 (48%), Positives = 246/403 (61%), Gaps = 36/403 (8%)
Query: 4 GSLSRAGPLPLLRQPP--IMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHT 61
GS LP L + P +MQP LD+K + FP++ + +GLF N++TMDPVQKAV++HT
Sbjct: 9 GSTCHTTTLPALVRTPTLMMQPSLDIKPFMSFPVDSSSAVGLFPNFNTMDPVQKAVINHT 68
Query: 62 FGGPLLKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPG 121
FG + K+ VISCN+CQ+RFNS SQAEAHYKG++HA++VK ++A K + + ++
Sbjct: 69 FGVSIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKDSA 128
Query: 122 DPAPPGS-TPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGT 180
P S TP G N + + + S S PS E+G + K G T
Sbjct: 129 KANPSCSITPITG-----------NNSDKSEDKGKLKASSSSQPSSSESGSFLLK-SGTT 176
Query: 181 PAP---ASLPGGS---------KEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTI 228
P P A+ P S + EEEKAK+LLYC+LCKVAVNSLSQLEAHN G+KHKT+
Sbjct: 177 PLPPGAATSPSKSTNGAPGTVVESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTM 236
Query: 229 LEARSGLGPIKAYPRLGPPTP---GEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRH 285
+EAR+G GPIK+YPR G G + Q++TFHCEIC+V VNSE+QLKQHISSRRH
Sbjct: 237 VEARNGAGPIKSYPRPGSRLKMQNGSKGSGLQNKTFHCEICDVHVNSEIQLKQHISSRRH 296
Query: 286 RDGVAGKP-NPLLSRHKK-SRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAG 343
+D VAGKP P S + K R LA L F K++ K LA L SPLA AAA
Sbjct: 297 KDRVAGKPLKPKYSPYNKLQRSPSILAAKLAFQKDMMKPLAPAFLSSPLAA----AAAVS 352
Query: 344 SPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGPILFSPY 386
S LSL P P+A L Q P I LL P GPIR ILF+PY
Sbjct: 353 SALSLPPRPSASLFQAPAIPPALLRPGHGPIRATPASILFAPY 395
>gi|63029928 zinc finger protein 385B isoform 1 [Homo sapiens]
Length = 471
Score = 329 bits (843), Expect = 3e-90
Identities = 195/403 (48%), Positives = 246/403 (61%), Gaps = 36/403 (8%)
Query: 4 GSLSRAGPLPLLRQPP--IMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHT 61
GS LP L + P +MQP LD+K + FP++ + +GLF N++TMDPVQKAV++HT
Sbjct: 85 GSTCHTTTLPALVRTPTLMMQPSLDIKPFMSFPVDSSSAVGLFPNFNTMDPVQKAVINHT 144
Query: 62 FGGPLLKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPG 121
FG + K+ VISCN+CQ+RFNS SQAEAHYKG++HA++VK ++A K + + ++
Sbjct: 145 FGVSIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKDSA 204
Query: 122 DPAPPGS-TPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGT 180
P S TP G N + + + S S PS E+G + K G T
Sbjct: 205 KANPSCSITPITG-----------NNSDKSEDKGKLKASSSSQPSSSESGSFLLK-SGTT 252
Query: 181 PAP---ASLPGGS---------KEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTI 228
P P A+ P S + EEEKAK+LLYC+LCKVAVNSLSQLEAHN G+KHKT+
Sbjct: 253 PLPPGAATSPSKSTNGAPGTVVESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTM 312
Query: 229 LEARSGLGPIKAYPRLGPPTP---GEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRH 285
+EAR+G GPIK+YPR G G + Q++TFHCEIC+V VNSE+QLKQHISSRRH
Sbjct: 313 VEARNGAGPIKSYPRPGSRLKMQNGSKGSGLQNKTFHCEICDVHVNSEIQLKQHISSRRH 372
Query: 286 RDGVAGKP-NPLLSRHKK-SRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAG 343
+D VAGKP P S + K R LA L F K++ K LA L SPLA AAA
Sbjct: 373 KDRVAGKPLKPKYSPYNKLQRSPSILAAKLAFQKDMMKPLAPAFLSSPLAA----AAAVS 428
Query: 344 SPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTAHGPILFSPY 386
S LSL P P+A L Q P I LL P GPIR ILF+PY
Sbjct: 429 SALSLPPRPSASLFQAPAIPPALLRPGHGPIRATPASILFAPY 471
Score = 55.8 bits (133), Expect = 6e-08
Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 19/188 (10%)
Query: 66 LLKTKRPVIS--CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDP 123
L K K+ ++ C +C I+ NS +QA+ H G H +RVK + + + P P
Sbjct: 24 LSKEKKKILFSFCEVCNIQLNSAAQAQVHSNGKSHRKRVK--QLSDGQPPPPAQASPSSN 81
Query: 124 APPGST--PTNGDGVAPRP-VSMENGLGPAPGSPEKQPGSPSPPSIP--ETGQGVTKGEG 178
+ GST T + P + M+ L P S + P T V K
Sbjct: 82 SSTGSTCHTTTLPALVRTPTLMMQPSLDIKPFMSFPVDSSSAVGLFPNFNTMDPVQKAVI 141
Query: 179 GTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPI 238
S+P K K+++ C +C++ NS SQ EAH KG+KH ++A L
Sbjct: 142 NHTFGVSIP-------PKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKA---LDAT 191
Query: 239 KAYPRLGP 246
K P++ P
Sbjct: 192 KNKPKMVP 199
Score = 33.1 bits (74), Expect = 0.43
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 263 CEICNVKVNSEVQLKQHISSRRHRDGVA----GKPNP 295
CE+CN+++NS Q + H + + HR V G+P P
Sbjct: 36 CEVCNIQLNSAAQAQVHSNGKSHRKRVKQLSDGQPPP 72
Score = 32.3 bits (72), Expect = 0.74
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 187 PGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKH-KTILEARSGLGPIKAYPRLG 245
P +E+K +C +C + +NS +Q + H+ G H K + + G P
Sbjct: 20 PEDQLSKEKKKILFSFCEVCNIQLNSAAQAQVHSNGKSHRKRVKQLSDGQPP-------- 71
Query: 246 PPTPGEPEA 254
PP P +
Sbjct: 72 PPAQASPSS 80
>gi|164663780 zinc finger protein 385B isoform 3 [Homo sapiens]
Length = 369
Score = 325 bits (833), Expect = 4e-89
Identities = 189/385 (49%), Positives = 239/385 (62%), Gaps = 34/385 (8%)
Query: 20 IMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTKRPVISCNIC 79
+MQP LD+K + FP++ + +GLF N++TMDPVQKAV++HTFG + K+ VISCN+C
Sbjct: 1 MMQPSLDIKPFMSFPVDSSSAVGLFPNFNTMDPVQKAVINHTFGVSIPPKKKQVISCNVC 60
Query: 80 QIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGS-TPTNGDGVAP 138
Q+RFNS SQAEAHYKG++HA++VK ++A K + + ++ P S TP G
Sbjct: 61 QLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKDSAKANPSCSITPITG----- 115
Query: 139 RPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAP---ASLPGGS----- 190
N + + + S S PS E+G + K G TP P A+ P S
Sbjct: 116 ------NNSDKSEDKGKLKASSSSQPSSSESGSFLLK-SGTTPLPPGAATSPSKSTNGAP 168
Query: 191 ----KEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGP 246
+ EEEKAK+LLYC+LCKVAVNSLSQLEAHN G+KHKT++EAR+G GPIK+YPR G
Sbjct: 169 GTVVESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYPRPGS 228
Query: 247 PTP---GEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKP-NPLLSRHKK 302
G + Q++TFHCEIC+V VNSE+QLKQHISSRRH+D VAGKP P S + K
Sbjct: 229 RLKMQNGSKGSGLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRVAGKPLKPKYSPYNK 288
Query: 303 -SRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPP 361
R LA L F K++ K LA L SPLA AAA S LSL P P+A L Q P
Sbjct: 289 LQRSPSILAAKLAFQKDMMKPLAPAFLSSPLAA----AAAVSSALSLPPRPSASLFQAPA 344
Query: 362 ITHPLLHPAPGPIRTAHGPILFSPY 386
I LL P GPIR ILF+PY
Sbjct: 345 IPPALLRPGHGPIRATPASILFAPY 369
>gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 268 bits (684), Expect = 8e-72
Identities = 171/416 (41%), Positives = 213/416 (51%), Gaps = 43/416 (10%)
Query: 11 PLPLLRQPPI----MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPL 66
P PLL P+ +QPPLD K +L F A L LF N+STMDPVQKAV+SHTFG P
Sbjct: 670 PSPLLASLPLPTRPLQPPLDFKHLLAFHFNGAAPLSLFPNFSTMDPVQKAVISHTFGVPS 729
Query: 67 LKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGR------------- 113
K+ ISCNIC +RFNS +QAEAHYKG++HAR++K +EAAK++ R
Sbjct: 730 PLKKKLFISCNICHLRFNSANQAEAHYKGHKHARKLKAVEAAKSKQRPHTQAQDGAVVSP 789
Query: 114 -------EPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSI 166
PG + PA P P P P E + S PP
Sbjct: 790 IPTLASGAPGEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPPCS 849
Query: 167 PETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHK 226
PE G+ + G PA A++ E K LYC CKV VNS SQL+AHN G KH+
Sbjct: 850 PEPGR---EAPGPEPAAAAVGSSMSGEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHR 906
Query: 227 TILEARSGL------GPIK---AYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLK 277
++E + G P+ A + T G FHC +C ++VNSE QLK
Sbjct: 907 WMMEGQRGAPRRSRGRPVSRGGAGHKAKRVTGGRGGRQGPSPAFHCALCQLQVNSETQLK 966
Query: 278 QHISSRRHRDGVAGKPNPLLSRHKKSRGAGELA-----GTLTFSKELPKSLAGGLLPSPL 332
QH+SSRRH+D +AGK S+H K + LA L K+L K+LA LPSPL
Sbjct: 967 QHMSSRRHKDRLAGKTPKPSSQHSKLQKHAALAVSILKSKLALQKQLTKTLAARFLPSPL 1026
Query: 333 AVAAVMAAAAGSPLSLRPAP-AAPLLQGPPITHPLLHPAP-GPIRTAHGPILFSPY 386
AA A PL+LRPAP AA L PI P L P G +R A GPI+ +PY
Sbjct: 1027 PTAATAICALPGPLALRPAPTAATTLFPAPILGPALFRTPAGAVRPATGPIVLAPY 1082
>gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 268 bits (684), Expect = 8e-72
Identities = 171/416 (41%), Positives = 213/416 (51%), Gaps = 43/416 (10%)
Query: 11 PLPLLRQPPI----MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPL 66
P PLL P+ +QPPLD K +L F A L LF N+STMDPVQKAV+SHTFG P
Sbjct: 670 PSPLLASLPLPTRPLQPPLDFKHLLAFHFNGAAPLSLFPNFSTMDPVQKAVISHTFGVPS 729
Query: 67 LKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGR------------- 113
K+ ISCNIC +RFNS +QAEAHYKG++HAR++K +EAAK++ R
Sbjct: 730 PLKKKLFISCNICHLRFNSANQAEAHYKGHKHARKLKAVEAAKSKQRPHTQAQDGAVVSP 789
Query: 114 -------EPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSI 166
PG + PA P P P P E + S PP
Sbjct: 790 IPTLASGAPGEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPPCS 849
Query: 167 PETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHK 226
PE G+ + G PA A++ E K LYC CKV VNS SQL+AHN G KH+
Sbjct: 850 PEPGR---EAPGPEPAAAAVGSSMSGEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHR 906
Query: 227 TILEARSGL------GPIK---AYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLK 277
++E + G P+ A + T G FHC +C ++VNSE QLK
Sbjct: 907 WMMEGQRGAPRRSRGRPVSRGGAGHKAKRVTGGRGGRQGPSPAFHCALCQLQVNSETQLK 966
Query: 278 QHISSRRHRDGVAGKPNPLLSRHKKSRGAGELA-----GTLTFSKELPKSLAGGLLPSPL 332
QH+SSRRH+D +AGK S+H K + LA L K+L K+LA LPSPL
Sbjct: 967 QHMSSRRHKDRLAGKTPKPSSQHSKLQKHAALAVSILKSKLALQKQLTKTLAARFLPSPL 1026
Query: 333 AVAAVMAAAAGSPLSLRPAP-AAPLLQGPPITHPLLHPAP-GPIRTAHGPILFSPY 386
AA A PL+LRPAP AA L PI P L P G +R A GPI+ +PY
Sbjct: 1027 PTAATAICALPGPLALRPAPTAATTLFPAPILGPALFRTPAGAVRPATGPIVLAPY 1082
>gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 268 bits (684), Expect = 8e-72
Identities = 171/416 (41%), Positives = 213/416 (51%), Gaps = 43/416 (10%)
Query: 11 PLPLLRQPPI----MQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPL 66
P PLL P+ +QPPLD K +L F A L LF N+STMDPVQKAV+SHTFG P
Sbjct: 670 PSPLLASLPLPTRPLQPPLDFKHLLAFHFNGAAPLSLFPNFSTMDPVQKAVISHTFGVPS 729
Query: 67 LKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGR------------- 113
K+ ISCNIC +RFNS +QAEAHYKG++HAR++K +EAAK++ R
Sbjct: 730 PLKKKLFISCNICHLRFNSANQAEAHYKGHKHARKLKAVEAAKSKQRPHTQAQDGAVVSP 789
Query: 114 -------EPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSI 166
PG + PA P P P P E + S PP
Sbjct: 790 IPTLASGAPGEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPPCS 849
Query: 167 PETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHK 226
PE G+ + G PA A++ E K LYC CKV VNS SQL+AHN G KH+
Sbjct: 850 PEPGR---EAPGPEPAAAAVGSSMSGEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHR 906
Query: 227 TILEARSGL------GPIK---AYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLK 277
++E + G P+ A + T G FHC +C ++VNSE QLK
Sbjct: 907 WMMEGQRGAPRRSRGRPVSRGGAGHKAKRVTGGRGGRQGPSPAFHCALCQLQVNSETQLK 966
Query: 278 QHISSRRHRDGVAGKPNPLLSRHKKSRGAGELA-----GTLTFSKELPKSLAGGLLPSPL 332
QH+SSRRH+D +AGK S+H K + LA L K+L K+LA LPSPL
Sbjct: 967 QHMSSRRHKDRLAGKTPKPSSQHSKLQKHAALAVSILKSKLALQKQLTKTLAARFLPSPL 1026
Query: 333 AVAAVMAAAAGSPLSLRPAP-AAPLLQGPPITHPLLHPAP-GPIRTAHGPILFSPY 386
AA A PL+LRPAP AA L PI P L P G +R A GPI+ +PY
Sbjct: 1027 PTAATAICALPGPLALRPAPTAATTLFPAPILGPALFRTPAGAVRPATGPIVLAPY 1082
>gi|11968019 p53 target zinc finger protein isoform 1 [Homo sapiens]
Length = 289
Score = 54.7 bits (130), Expect = 1e-07
Identities = 54/229 (23%), Positives = 88/229 (38%), Gaps = 39/229 (17%)
Query: 76 CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDG 135
C +C + NS QA+AHY+G H ++++ AA + PP + +N
Sbjct: 72 CKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANS-------------CPPPARMSNVVE 118
Query: 136 VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEE 195
A PV P P+ P I T K + + ++ + +
Sbjct: 119 PAATPV--------VPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKN 170
Query: 196 KAKRLLYCALCKVAVNSLS------QLEAHNKGTKHKTILEARS-------GLGPIKAYP 242
AKRL L + NS S Q A +G + K + R+ GP P
Sbjct: 171 HAKRL---RLAEAQSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPY-FNP 226
Query: 243 RLGPPTPGE-PEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVA 290
R P + F+C +CNV E++ +QH+ S++H+ V+
Sbjct: 227 RSRQRIPRDLAMCVTPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVS 275
Score = 47.4 bits (111), Expect = 2e-05
Identities = 45/163 (27%), Positives = 64/163 (39%), Gaps = 33/163 (20%)
Query: 154 PEKQPGSPSPP-SIPETGQGVTKGEGGTP--APASLPGGSKEEEEKAK----------RL 200
P KQP SPSPP S+ G + P ASLP +EE K +
Sbjct: 11 PPKQP-SPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQDCALEELCKP 69
Query: 201 LYCALCKVAVNSLSQLEAHNKGTKHKTILE---ARSGLGP---------------IKAYP 242
LYC LC V +NS Q +AH +G H L A + P + P
Sbjct: 70 LYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPAATPVVPVPP 129
Query: 243 RLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRH 285
++G PG A + + C++C+ +S + H + H
Sbjct: 130 QMGSFKPGGRVILATENDY-CKLCDASFSSPAVAQAHYQGKNH 171
>gi|23199978 p53 target zinc finger protein isoform 2 [Homo sapiens]
Length = 288
Score = 54.7 bits (130), Expect = 1e-07
Identities = 54/228 (23%), Positives = 88/228 (38%), Gaps = 38/228 (16%)
Query: 76 CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDG 135
C +C + NS QA+AHY+G H ++++ AA + PP + +N
Sbjct: 72 CKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANS-------------CPPPARMSNVVE 118
Query: 136 VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEE 195
A PV P P+ P I T K + + ++ + +
Sbjct: 119 PAATPV--------VPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKN 170
Query: 196 KAKRLLYCALCKVAVNSLS------QLEAHNKGTKHKTILEARS------GLGPIKAYPR 243
AKRL L + NS S Q A +G + K + R+ GP PR
Sbjct: 171 HAKRL---RLAEAQSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSGPY-FNPR 226
Query: 244 LGPPTPGE-PEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVA 290
P + F+C +CNV E++ +QH+ S++H+ V+
Sbjct: 227 SRQRIPRDLAMCVTPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVS 274
Score = 47.4 bits (111), Expect = 2e-05
Identities = 45/163 (27%), Positives = 64/163 (39%), Gaps = 33/163 (20%)
Query: 154 PEKQPGSPSPP-SIPETGQGVTKGEGGTP--APASLPGGSKEEEEKAK----------RL 200
P KQP SPSPP S+ G + P ASLP +EE K +
Sbjct: 11 PPKQP-SPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQDCALEELCKP 69
Query: 201 LYCALCKVAVNSLSQLEAHNKGTKHKTILE---ARSGLGP---------------IKAYP 242
LYC LC V +NS Q +AH +G H L A + P + P
Sbjct: 70 LYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPAATPVVPVPP 129
Query: 243 RLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRH 285
++G PG A + + C++C+ +S + H + H
Sbjct: 130 QMGSFKPGGRVILATENDY-CKLCDASFSSPAVAQAHYQGKNH 171
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 54.7 bits (130), Expect = 1e-07
Identities = 72/243 (29%), Positives = 91/243 (37%), Gaps = 47/243 (19%)
Query: 4 GSLSRAGPLPLLRQPPIMQPPLDL--KQILPFPLEPAPTLGLFSNYSTMDPV---QKAVL 58
GS S G P P P+DL K P P PAP L + + +A L
Sbjct: 774 GSGSGPGLAPARSPGPAADGPIDLSKKPRRPLPGAPAPALADYHECTACRVSFHSLEAYL 833
Query: 59 SHT-----FGGPLLKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIE-AAKTRG 112
+H P P +C C + H+ R G+ A G
Sbjct: 834 AHKKYSCPAAPPPGALGLPAAACPYCPPNGPVRGDLLEHF------RLAHGLLLGAPLAG 887
Query: 113 REPGVREPGDPAPPGSTPTNGDGVAPRPVSM--ENGLGPAPGSPEKQPGS-PSPPSIPE- 168
PGV E PA G +P +P+P S +GLGP P P PG PSP + PE
Sbjct: 888 --PGV-EARTPADRGPSPAPAPAASPQPGSRGPRDGLGPEPQEPP--PGPPPSPAAAPEA 942
Query: 169 ----------TGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEA 218
+ +GV GTPAP LP G+ YC LC + +SLS A
Sbjct: 943 VPPPPAPPSYSDKGVQTPSKGTPAP--LPNGNHR---------YCRLCNIKFSSLSTFIA 991
Query: 219 HNK 221
H K
Sbjct: 992 HKK 994
Score = 48.5 bits (114), Expect = 1e-05
Identities = 80/317 (25%), Positives = 103/317 (32%), Gaps = 51/317 (16%)
Query: 76 CNICQIRFNSQSQAEAH---YKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTN 132
C C IRF+ H Y +RH + PG PG APP +P
Sbjct: 685 CEACNIRFSRHETYTVHKRYYCASRHD------PPPRRPAAPPG--PPGPAAPPAPSPAA 736
Query: 133 GDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPA--PASLPGGS 190
R E AP P PG P P G G G G PA P G
Sbjct: 737 PVRTRRRRKLYELHAAGAP--PPPPPGHAPAPESPRPGSGSGSGPGLAPARSPGPAADGP 794
Query: 191 KEEEEKAKRLL------------YCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPI 238
+ +K +R L C C+V+ +SL AH K + GL P
Sbjct: 795 IDLSKKPRRPLPGAPAPALADYHECTACRVSFHSLEAYLAHKKYSCPAAPPPGALGL-PA 853
Query: 239 KAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRD-GVAGKPNPLL 297
A P P P + R H + + + +R D G + P P
Sbjct: 854 AACPYCPPNGPVRGDLLEHFRLAHGLLLGAPLAG-----PGVEARTPADRGPSPAPAPAA 908
Query: 298 SRHKKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLL 357
S SRG + G P+ G PSP A +P ++ P PA P
Sbjct: 909 SPQPGSRGPRDGLG------PEPQEPPPGPPPSP----------AAAPEAVPPPPAPPSY 952
Query: 358 QGPPITHPLL-HPAPGP 373
+ P PAP P
Sbjct: 953 SDKGVQTPSKGTPAPLP 969
Score = 39.7 bits (91), Expect = 0.005
Identities = 53/229 (23%), Positives = 70/229 (30%), Gaps = 57/229 (24%)
Query: 151 PGSPEKQPGSPSPPSIPETGQGV---TKGEGGTPAP-----------ASLPGGSKEEEEK 196
PG PG P+ P P + G +G GG P + PG S ++ E
Sbjct: 619 PGPARAPPGQPAEPDAPRSSPGPGAREEGAGGAATPEDGAGGRGSEGSQSPGSSVDDAED 678
Query: 197 AKRLLYCALCKVAVNSLSQLEAHNKGTKHKT-ILEARSGLGPIKAYPRLGPPTPGEPEAP 255
C C + + H T HK +R P + GPP P P AP
Sbjct: 679 DPSRTLCEACNI------RFSRHETYTVHKRYYCASRHDPPPRRPAAPPGPPGPAAPPAP 732
Query: 256 AQDRTFHCEICNVKVNSEVQLKQHISSRRHRD----GVAGKPNPLLSRHKKSRGAGELAG 311
+ + +RR R AG P P H
Sbjct: 733 SP-------------------AAPVRTRRRRKLYELHAAGAPPPPPPGHAP--------- 764
Query: 312 TLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGP 360
+ E P+ +G LA A AA P+ L P PL P
Sbjct: 765 ----APESPRPGSGSGSGPGLAPARSPGPAADGPIDLSKKPRRPLPGAP 809
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 51.6 bits (122), Expect = 1e-06
Identities = 60/281 (21%), Positives = 88/281 (31%), Gaps = 73/281 (25%)
Query: 76 CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTN--- 132
C +C N H +H + V + G PG+ PG P PPG+TPT+
Sbjct: 655 CKVCSYETNISRNLRIHMTSEKHMQNVLMLHQGLPLGLPPGLMGPGPPPPPGATPTSPPE 714
Query: 133 ------------------GDGVAP-RPVSME---NGL----GPAPGSPEKQPGSPSPPSI 166
G G+ P +P+ + NG PA P PGS SP +
Sbjct: 715 LFQYFGPQALGQPQTPLAGPGLRPDKPLEAQLLLNGFHHVGAPARKFPTSAPGSLSPDAH 774
Query: 167 PETGQGVTKGEGGTPAP-----------------------------------ASLPGGSK 191
Q + P SLP
Sbjct: 775 LPPSQLLGSSSDSLPTSPPPDDSLSLKVFRCLVCQAFSTDSLELLLYHCSIGRSLP--EA 832
Query: 192 EEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTP-- 249
E +E A C LC + + H K KH + + L + +G P+P
Sbjct: 833 EWKEVAGDTHRCKLCCYGTQLKANFQLHLKTDKHAQKYQLAAHLR--EGGGAMGTPSPAS 890
Query: 250 ---GEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRD 287
G P C IC+ + NS+ +++ H H +
Sbjct: 891 LGDGAPYGSVSPLHLRCNICDFESNSKEKMQLHARGAAHEE 931
Score = 47.0 bits (110), Expect = 3e-05
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 31/170 (18%)
Query: 176 GEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGL 235
G GTP+PASL G+ L C +C NS +++ H +G H E S +
Sbjct: 881 GAMGTPSPASLGDGAPYGSVSPLHLR-CNICDFESNSKEKMQLHARGAAH----EENSQI 935
Query: 236 GPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNP 295
++ LG +HC +C + S + + QH+ + HRD A +
Sbjct: 936 YKVRLGAELG--------------LYHCLLCAWETPSRLAVLQHLRTPAHRDAQAQRRLQ 981
Query: 296 LLSRHKKS-RGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGS 344
LL + G L L+FS G L +P A V+ A AG+
Sbjct: 982 LLQNGPTTEEGLAALQSILSFSH--------GQLRTP---AEVVPAEAGN 1020
Score = 43.1 bits (100), Expect = 4e-04
Identities = 68/285 (23%), Positives = 99/285 (34%), Gaps = 53/285 (18%)
Query: 115 PGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG-SPEKQPGSPS-----PPSIPE 168
P + P P P V +P S G P+P SP +P + + PP++ E
Sbjct: 1308 PNLTPEASPDPLPEPPLASVEVPDKP-SGSPGQPPSPAPSPVPEPDAQAEDVAPPPTMAE 1366
Query: 169 TGQGVTKGEGGTPAPASLPGGSKEEEEKAK-------------RLLYCALCKVAVNSLSQ 215
+G T GE + PA P S+ K R C +CK + +
Sbjct: 1367 EEEGTT-GELRSAEPA--PADSRHPLTYRKTTNFALDKFLDPARPYKCTVCKESFTQKNI 1423
Query: 216 LEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAP-----AQDRTFHCEICNVKV 270
L H H ++ ++ + P P GE AP A D+ F C +C V
Sbjct: 1424 LLVHYNSVSHLHKMK-KAAIDP-------SAPARGEAGAPPTTTAATDKPFKCTVCRVSY 1475
Query: 271 NSEVQLKQHISSRRHRDGVAGKPNPLL----SRHKKSRGAGELAGTLTFSKELPKSLAGG 326
N L+ H+ S H+ G R ++ GE G + K+ P +
Sbjct: 1476 NQSSTLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEGEVGTEKKGPDT---- 1531
Query: 327 LLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAP 371
S + PL L PA P T P+L P P
Sbjct: 1532 ---SGFISGLPFLSPPPPPLDLHRFPA------PLFTPPVLPPFP 1567
Score = 42.7 bits (99), Expect = 5e-04
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 171 QGVTKGEGG--TPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKH-KT 227
QG G GG +P ASLP + ++E K K C +C N L H KH +
Sbjct: 621 QGFQAGPGGQGSPTEASLPPSAGDKEPKTKSSWQCKVCSYETNISRNLRIHMTSEKHMQN 680
Query: 228 ILEARSGLGPIKAYPRL---GPPTP--GEPEAPAQ 257
+L GL P+ P L GPP P P +P +
Sbjct: 681 VLMLHQGL-PLGLPPGLMGPGPPPPPGATPTSPPE 714
Score = 41.6 bits (96), Expect = 0.001
Identities = 69/282 (24%), Positives = 99/282 (35%), Gaps = 52/282 (18%)
Query: 116 GVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTK 175
G E G PP + + P S E G PAP GSP PS P Q
Sbjct: 462 GQEEDGGLCPPLNQSS--------PTSKEGGTLPAP------VGSPEDPSDPP--QPYRL 505
Query: 176 GEGGTPAPASLPGGSKEEE------EKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTIL 229
+ TPAPA+ G S + + L C C L+ H + KH
Sbjct: 506 ADDYTPAPAAFQGLSLSSHMSLLHSRNSCKTLKCPKCNWHYKYQQTLDVHMR-EKHPESN 564
Query: 230 EARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRH---- 285
S A+PRL GE + + C++CN ++ L H+ S +H
Sbjct: 565 SHCSYCSAGGAHPRLAR---GESYNCGY-KPYRCDVCNYSTTTKGNLSIHMQSDKHLANL 620
Query: 286 ---RDGVAGKPNPLLSRHKKSRGAGE-------LAGTLTFSKELPKSLAGGLLPSPLAVA 335
+ G G+ +P + S G E ++ + ++L + S +
Sbjct: 621 QGFQAGPGGQGSPTEASLPPSAGDKEPKTKSSWQCKVCSYETNISRNLRIH-MTSEKHMQ 679
Query: 336 AVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAPGPIRTA 377
V+ G PL L P P GPP P PG T+
Sbjct: 680 NVLMLHQGLPLGLPPGLMGP---GPP-------PPPGATPTS 711
Score = 38.9 bits (89), Expect = 0.008
Identities = 65/277 (23%), Positives = 102/277 (36%), Gaps = 43/277 (15%)
Query: 112 GREPGVREPGDPAP--PGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET 169
G+E P P P P P+ +G P + + + + S S + PE+
Sbjct: 2202 GKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAEPES 2261
Query: 170 -GQGVTKGE--GGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTK-- 224
G G T G GGT P + + + +L C A + + E G +
Sbjct: 2262 PGAGGTSGGPGGGTGVPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIG 2321
Query: 225 -HKTILE-----ARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQ 278
K +++ AR+ K T G E + C C+VK + V +
Sbjct: 2322 LPKRVIQVWFQNARAKEKKAKLQGTAAGSTGGSSEGLLAAQRTDCPYCDVKYDFYVSCRG 2381
Query: 279 HISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVM 338
H+ SR+H L++ K++ A + +S L P+P A A+
Sbjct: 2382 HLFSRQH-----------LAKLKEAVRA----------QLKSESKCYDLAPAPEAPPALK 2420
Query: 339 AAAAGSPLSLRPAPAAP--------LLQGPPITHPLL 367
A A +P S+ P AAP LL GP + P L
Sbjct: 2421 APPATTPASM-PLGAAPTLPRLAPVLLSGPALAQPPL 2456
Score = 36.2 bits (82), Expect = 0.051
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 69 TKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEA-AKTRGREPGVREPGDPAPPG 127
T +P C +C++ +N S E H + H R +G + +K G E EP + G
Sbjct: 1462 TDKP-FKCTVCRVSYNQSSTLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEG 1520
Query: 128 STPTNGDG------------VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET 169
T G ++P P ++ PAP P P P +PE+
Sbjct: 1521 EVGTEKKGPDTSGFISGLPFLSPPPPPLDLHRFPAP--LFTPPVLPPFPLVPES 1572
Score = 35.0 bits (79), Expect = 0.11
Identities = 36/141 (25%), Positives = 49/141 (34%), Gaps = 22/141 (15%)
Query: 147 LGPAPGSPEKQPGSP-SPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCAL 205
L P P PE +P PP +P G+G E G L G + C
Sbjct: 2619 LQPPPQPPEPTATAPPKPPELPAPGEG----EAGE-VDELLTGSTGISTVDVTHRYLCRQ 2673
Query: 206 CKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEI 265
CK+A + + AH + R G + PP P T+HC
Sbjct: 2674 CKMAFDGEAPATAHQRSF----CFFGRGSGGSM-------PPPLRVPIC-----TYHCLA 2717
Query: 266 CNVKVNSEVQLKQHISSRRHR 286
C V ++ L H+ S HR
Sbjct: 2718 CEVLLSGREALASHLRSSAHR 2738
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 51.6 bits (122), Expect = 1e-06
Identities = 60/281 (21%), Positives = 88/281 (31%), Gaps = 73/281 (25%)
Query: 76 CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTN--- 132
C +C N H +H + V + G PG+ PG P PPG+TPT+
Sbjct: 571 CKVCSYETNISRNLRIHMTSEKHMQNVLMLHQGLPLGLPPGLMGPGPPPPPGATPTSPPE 630
Query: 133 ------------------GDGVAP-RPVSME---NGL----GPAPGSPEKQPGSPSPPSI 166
G G+ P +P+ + NG PA P PGS SP +
Sbjct: 631 LFQYFGPQALGQPQTPLAGPGLRPDKPLEAQLLLNGFHHVGAPARKFPTSAPGSLSPDAH 690
Query: 167 PETGQGVTKGEGGTPAP-----------------------------------ASLPGGSK 191
Q + P SLP
Sbjct: 691 LPPSQLLGSSSDSLPTSPPPDDSLSLKVFRCLVCQAFSTDSLELLLYHCSIGRSLP--EA 748
Query: 192 EEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTP-- 249
E +E A C LC + + H K KH + + L + +G P+P
Sbjct: 749 EWKEVAGDTHRCKLCCYGTQLKANFQLHLKTDKHAQKYQLAAHLR--EGGGAMGTPSPAS 806
Query: 250 ---GEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRD 287
G P C IC+ + NS+ +++ H H +
Sbjct: 807 LGDGAPYGSVSPLHLRCNICDFESNSKEKMQLHARGAAHEE 847
Score = 47.0 bits (110), Expect = 3e-05
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 31/170 (18%)
Query: 176 GEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGL 235
G GTP+PASL G+ L C +C NS +++ H +G H E S +
Sbjct: 797 GAMGTPSPASLGDGAPYGSVSPLHLR-CNICDFESNSKEKMQLHARGAAH----EENSQI 851
Query: 236 GPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNP 295
++ LG +HC +C + S + + QH+ + HRD A +
Sbjct: 852 YKVRLGAELG--------------LYHCLLCAWETPSRLAVLQHLRTPAHRDAQAQRRLQ 897
Query: 296 LLSRHKKS-RGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGS 344
LL + G L L+FS G L +P A V+ A AG+
Sbjct: 898 LLQNGPTTEEGLAALQSILSFSH--------GQLRTP---AEVVPAEAGN 936
Score = 43.1 bits (100), Expect = 4e-04
Identities = 68/285 (23%), Positives = 99/285 (34%), Gaps = 53/285 (18%)
Query: 115 PGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG-SPEKQPGSPS-----PPSIPE 168
P + P P P V +P S G P+P SP +P + + PP++ E
Sbjct: 1224 PNLTPEASPDPLPEPPLASVEVPDKP-SGSPGQPPSPAPSPVPEPDAQAEDVAPPPTMAE 1282
Query: 169 TGQGVTKGEGGTPAPASLPGGSKEEEEKAK-------------RLLYCALCKVAVNSLSQ 215
+G T GE + PA P S+ K R C +CK + +
Sbjct: 1283 EEEGTT-GELRSAEPA--PADSRHPLTYRKTTNFALDKFLDPARPYKCTVCKESFTQKNI 1339
Query: 216 LEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAP-----AQDRTFHCEICNVKV 270
L H H ++ ++ + P P GE AP A D+ F C +C V
Sbjct: 1340 LLVHYNSVSHLHKMK-KAAIDP-------SAPARGEAGAPPTTTAATDKPFKCTVCRVSY 1391
Query: 271 NSEVQLKQHISSRRHRDGVAGKPNPLL----SRHKKSRGAGELAGTLTFSKELPKSLAGG 326
N L+ H+ S H+ G R ++ GE G + K+ P +
Sbjct: 1392 NQSSTLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEGEVGTEKKGPDT---- 1447
Query: 327 LLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAP 371
S + PL L PA P T P+L P P
Sbjct: 1448 ---SGFISGLPFLSPPPPPLDLHRFPA------PLFTPPVLPPFP 1483
Score = 42.4 bits (98), Expect = 7e-04
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 171 QGVTKGEGG--TPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKH-KT 227
QG G GG +P ASLP + ++E K K C +C N L H KH +
Sbjct: 537 QGFQAGPGGQGSPPEASLPPSAGDKEPKTKSSWQCKVCSYETNISRNLRIHMTSEKHMQN 596
Query: 228 ILEARSGLGPIKAYPRL---GPPTP--GEPEAPAQ 257
+L GL P+ P L GPP P P +P +
Sbjct: 597 VLMLHQGL-PLGLPPGLMGPGPPPPPGATPTSPPE 630
Score = 41.2 bits (95), Expect = 0.002
Identities = 48/182 (26%), Positives = 66/182 (36%), Gaps = 27/182 (14%)
Query: 116 GVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTK 175
G E G PP + + P S E G PAP GSP PS P Q
Sbjct: 378 GQEEDGGLCPPLNQSS--------PTSKEGGTLPAP------VGSPEDPSDPP--QPYRL 421
Query: 176 GEGGTPAPASLPGGSKEEE------EKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTIL 229
+ TPAPA+ G S + + L C C L+ H + KH
Sbjct: 422 ADDYTPAPAAFQGLSLSSHMSLLHSRNSCKTLKCPKCNWHYKYQQTLDVHMR-EKHPESN 480
Query: 230 EARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGV 289
S A+PRL GE + + C++CN ++ L H+ S +H +
Sbjct: 481 SHCSYCSAGGAHPRLAR---GESYNCGY-KPYRCDVCNYSTTTKGNLSIHMQSDKHLANL 536
Query: 290 AG 291
G
Sbjct: 537 QG 538
Score = 38.9 bits (89), Expect = 0.008
Identities = 65/277 (23%), Positives = 102/277 (36%), Gaps = 43/277 (15%)
Query: 112 GREPGVREPGDPAP--PGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET 169
G+E P P P P P+ +G P + + + + S S + PE+
Sbjct: 2118 GKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAEPES 2177
Query: 170 -GQGVTKGE--GGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTK-- 224
G G T G GGT P + + + +L C A + + E G +
Sbjct: 2178 PGAGGTSGGPGGGTGVPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIG 2237
Query: 225 -HKTILE-----ARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQ 278
K +++ AR+ K T G E + C C+VK + V +
Sbjct: 2238 LPKRVIQVWFQNARAKEKKAKLQGTAAGSTGGSSEGLLAAQRTDCPYCDVKYDFYVSCRG 2297
Query: 279 HISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVM 338
H+ SR+H L++ K++ A + +S L P+P A A+
Sbjct: 2298 HLFSRQH-----------LAKLKEAVRA----------QLKSESKCYDLAPAPEAPPALK 2336
Query: 339 AAAAGSPLSLRPAPAAP--------LLQGPPITHPLL 367
A A +P S+ P AAP LL GP + P L
Sbjct: 2337 APPATTPASM-PLGAAPTLPRLAPVLLSGPALAQPPL 2372
Score = 36.2 bits (82), Expect = 0.051
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 69 TKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEA-AKTRGREPGVREPGDPAPPG 127
T +P C +C++ +N S E H + H R +G + +K G E EP + G
Sbjct: 1378 TDKP-FKCTVCRVSYNQSSTLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEG 1436
Query: 128 STPTNGDG------------VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET 169
T G ++P P ++ PAP P P P +PE+
Sbjct: 1437 EVGTEKKGPDTSGFISGLPFLSPPPPPLDLHRFPAP--LFTPPVLPPFPLVPES 1488
Score = 35.0 bits (79), Expect = 0.11
Identities = 36/141 (25%), Positives = 49/141 (34%), Gaps = 22/141 (15%)
Query: 147 LGPAPGSPEKQPGSP-SPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCAL 205
L P P PE +P PP +P G+G E G L G + C
Sbjct: 2535 LQPPPQPPEPTATAPPKPPELPAPGEG----EAGE-VDELLTGSTGISTVDVTHRYLCRQ 2589
Query: 206 CKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEI 265
CK+A + + AH + R G + PP P T+HC
Sbjct: 2590 CKMAFDGEAPATAHQRSF----CFFGRGSGGSM-------PPPLRVPIC-----TYHCLA 2633
Query: 266 CNVKVNSEVQLKQHISSRRHR 286
C V ++ L H+ S HR
Sbjct: 2634 CEVLLSGREALASHLRSSAHR 2654
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 51.6 bits (122), Expect = 1e-06
Identities = 60/281 (21%), Positives = 88/281 (31%), Gaps = 73/281 (25%)
Query: 76 CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTN--- 132
C +C N H +H + V + G PG+ PG P PPG+TPT+
Sbjct: 571 CKVCSYETNISRNLRIHMTSEKHMQNVLMLHQGLPLGLPPGLMGPGPPPPPGATPTSPPE 630
Query: 133 ------------------GDGVAP-RPVSME---NGL----GPAPGSPEKQPGSPSPPSI 166
G G+ P +P+ + NG PA P PGS SP +
Sbjct: 631 LFQYFGPQALGQPQTPLAGPGLRPDKPLEAQLLLNGFHHVGAPARKFPTSAPGSLSPDAH 690
Query: 167 PETGQGVTKGEGGTPAP-----------------------------------ASLPGGSK 191
Q + P SLP
Sbjct: 691 LPPSQLLGSSSDSLPTSPPPDDSLSLKVFRCLVCQAFSTDSLELLLYHCSIGRSLP--EA 748
Query: 192 EEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTP-- 249
E +E A C LC + + H K KH + + L + +G P+P
Sbjct: 749 EWKEVAGDTHRCKLCCYGTQLKANFQLHLKTDKHAQKYQLAAHLR--EGGGAMGTPSPAS 806
Query: 250 ---GEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRD 287
G P C IC+ + NS+ +++ H H +
Sbjct: 807 LGDGAPYGSVSPLHLRCNICDFESNSKEKMQLHARGAAHEE 847
Score = 47.0 bits (110), Expect = 3e-05
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 31/170 (18%)
Query: 176 GEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGL 235
G GTP+PASL G+ L C +C NS +++ H +G H E S +
Sbjct: 797 GAMGTPSPASLGDGAPYGSVSPLHLR-CNICDFESNSKEKMQLHARGAAH----EENSQI 851
Query: 236 GPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNP 295
++ LG +HC +C + S + + QH+ + HRD A +
Sbjct: 852 YKVRLGAELG--------------LYHCLLCAWETPSRLAVLQHLRTPAHRDAQAQRRLQ 897
Query: 296 LLSRHKKS-RGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGS 344
LL + G L L+FS G L +P A V+ A AG+
Sbjct: 898 LLQNGPTTEEGLAALQSILSFSH--------GQLRTP---AEVVPAEAGN 936
Score = 43.1 bits (100), Expect = 4e-04
Identities = 68/285 (23%), Positives = 99/285 (34%), Gaps = 53/285 (18%)
Query: 115 PGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG-SPEKQPGSPS-----PPSIPE 168
P + P P P V +P S G P+P SP +P + + PP++ E
Sbjct: 1224 PNLTPEASPDPLPEPPLASVEVPDKP-SGSPGQPPSPAPSPVPEPDAQAEDVAPPPTMAE 1282
Query: 169 TGQGVTKGEGGTPAPASLPGGSKEEEEKAK-------------RLLYCALCKVAVNSLSQ 215
+G T GE + PA P S+ K R C +CK + +
Sbjct: 1283 EEEGTT-GELRSAEPA--PADSRHPLTYRKTTNFALDKFLDPARPYKCTVCKESFTQKNI 1339
Query: 216 LEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAP-----AQDRTFHCEICNVKV 270
L H H ++ ++ + P P GE AP A D+ F C +C V
Sbjct: 1340 LLVHYNSVSHLHKMK-KAAIDP-------SAPARGEAGAPPTTTAATDKPFKCTVCRVSY 1391
Query: 271 NSEVQLKQHISSRRHRDGVAGKPNPLL----SRHKKSRGAGELAGTLTFSKELPKSLAGG 326
N L+ H+ S H+ G R ++ GE G + K+ P +
Sbjct: 1392 NQSSTLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEGEVGTEKKGPDT---- 1447
Query: 327 LLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPLLHPAP 371
S + PL L PA P T P+L P P
Sbjct: 1448 ---SGFISGLPFLSPPPPPLDLHRFPA------PLFTPPVLPPFP 1483
Score = 42.4 bits (98), Expect = 7e-04
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 171 QGVTKGEGG--TPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKH-KT 227
QG G GG +P ASLP + ++E K K C +C N L H KH +
Sbjct: 537 QGFQAGPGGQGSPPEASLPPSAGDKEPKTKSSWQCKVCSYETNISRNLRIHMTSEKHMQN 596
Query: 228 ILEARSGLGPIKAYPRL---GPPTP--GEPEAPAQ 257
+L GL P+ P L GPP P P +P +
Sbjct: 597 VLMLHQGL-PLGLPPGLMGPGPPPPPGATPTSPPE 630
Score = 41.2 bits (95), Expect = 0.002
Identities = 48/182 (26%), Positives = 66/182 (36%), Gaps = 27/182 (14%)
Query: 116 GVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTK 175
G E G PP + + P S E G PAP GSP PS P Q
Sbjct: 378 GQEEDGGLCPPLNQSS--------PTSKEGGTLPAP------VGSPEDPSDPP--QPYRL 421
Query: 176 GEGGTPAPASLPGGSKEEE------EKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTIL 229
+ TPAPA+ G S + + L C C L+ H + KH
Sbjct: 422 ADDYTPAPAAFQGLSLSSHMSLLHSRNSCKTLKCPKCNWHYKYQQTLDVHMR-EKHPESN 480
Query: 230 EARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGV 289
S A+PRL GE + + C++CN ++ L H+ S +H +
Sbjct: 481 SHCSYCSAGGAHPRLAR---GESYNCGY-KPYRCDVCNYSTTTKGNLSIHMQSDKHLANL 536
Query: 290 AG 291
G
Sbjct: 537 QG 538
Score = 38.9 bits (89), Expect = 0.008
Identities = 65/277 (23%), Positives = 102/277 (36%), Gaps = 43/277 (15%)
Query: 112 GREPGVREPGDPAP--PGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET 169
G+E P P P P P+ +G P + + + + S S + PE+
Sbjct: 2118 GKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAEPES 2177
Query: 170 -GQGVTKGE--GGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTK-- 224
G G T G GGT P + + + +L C A + + E G +
Sbjct: 2178 PGAGGTSGGPGGGTGVPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIG 2237
Query: 225 -HKTILE-----ARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQ 278
K +++ AR+ K T G E + C C+VK + V +
Sbjct: 2238 LPKRVIQVWFQNARAKEKKAKLQGTAAGSTGGSSEGLLAAQRTDCPYCDVKYDFYVSCRG 2297
Query: 279 HISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVM 338
H+ SR+H L++ K++ A + +S L P+P A A+
Sbjct: 2298 HLFSRQH-----------LAKLKEAVRA----------QLKSESKCYDLAPAPEAPPALK 2336
Query: 339 AAAAGSPLSLRPAPAAP--------LLQGPPITHPLL 367
A A +P S+ P AAP LL GP + P L
Sbjct: 2337 APPATTPASM-PLGAAPTLPRLAPVLLSGPALAQPPL 2372
Score = 36.2 bits (82), Expect = 0.051
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 69 TKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEA-AKTRGREPGVREPGDPAPPG 127
T +P C +C++ +N S E H + H R +G + +K G E EP + G
Sbjct: 1378 TDKP-FKCTVCRVSYNQSSTLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEGETEG 1436
Query: 128 STPTNGDG------------VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET 169
T G ++P P ++ PAP P P P +PE+
Sbjct: 1437 EVGTEKKGPDTSGFISGLPFLSPPPPPLDLHRFPAP--LFTPPVLPPFPLVPES 1488
Score = 35.0 bits (79), Expect = 0.11
Identities = 36/141 (25%), Positives = 49/141 (34%), Gaps = 22/141 (15%)
Query: 147 LGPAPGSPEKQPGSP-SPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCAL 205
L P P PE +P PP +P G+G E G L G + C
Sbjct: 2535 LQPPPQPPEPTATAPPKPPELPAPGEG----EAGE-VDELLTGSTGISTVDVTHRYLCRQ 2589
Query: 206 CKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEI 265
CK+A + + AH + R G + PP P T+HC
Sbjct: 2590 CKMAFDGEAPATAHQRSF----CFFGRGSGGSM-------PPPLRVPIC-----TYHCLA 2633
Query: 266 CNVKVNSEVQLKQHISSRRHR 286
C V ++ L H+ S HR
Sbjct: 2634 CEVLLSGREALASHLRSSAHR 2654
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 50.8 bits (120), Expect = 2e-06
Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 26/187 (13%)
Query: 74 ISCNICQIRFNSQSQAEAHYKGNRHARRVK----------GIEAAKTRGREPGVR-EPGD 122
+ C++C + AH +G++H + K +E A PG +P
Sbjct: 319 LHCDLCAVSCTGADAYAAHIRGSKHQKVFKLHAKLGKPIPTLEPALATESPPGAEAKPTS 378
Query: 123 PAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEK-----QPGSPSPPSIPETGQGVTKGE 177
P P ++ +A RPV+ + L P P+ Q G P+ P + G G
Sbjct: 379 PTGPSVCASSRPALAKRPVASK-ALCEGPPEPQAAGCRPQWGKPAQPKLEGPGAPTQGGS 437
Query: 178 GGTPAPAS--LPGGSKEEEEKAK---RLL--YCALCKVAVNSLSQLEAHNKGTKHKTILE 230
PA S P G + EE R+L +C LC+ + N L+ + H +G +H+ L+
Sbjct: 438 KEAPAGCSDAQPVGPEYVEEVFSDEGRVLRFHCKLCECSFNDLNAKDLHVRGRRHR--LQ 495
Query: 231 ARSGLGP 237
R + P
Sbjct: 496 YRKKVNP 502
Score = 50.4 bits (119), Expect = 3e-06
Identities = 57/252 (22%), Positives = 80/252 (31%), Gaps = 47/252 (18%)
Query: 125 PPGSTPTNGDGVAPR----PVSMENGLGP--APGSPEKQPGSPS---PPSIPETGQGVTK 175
PP PT AP S+ + P P P PG P PP P +
Sbjct: 188 PPSYNPTCTAYTAPSYPNYDASVYSAASPFYPPAQPPPPPGPPQQLPPPPAPAGSGSSPR 247
Query: 176 GEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGL 235
+ P P+ LP + + +L YC +CK++ H G KH+
Sbjct: 248 ADSKPPLPSKLP--RPKAGPRQLQLHYCDICKISCAGPQTYREHLGGQKHRKK------- 298
Query: 236 GPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHR-----DGVA 290
+A + G G P HC++C V HI +H+
Sbjct: 299 ---EAAQKTGVQPNGSPRGVQAQ--LHCDLCAVSCTGADAYAAHIRGSKHQKVFKLHAKL 353
Query: 291 GKPNPLLSRHKKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSP-LSLR 349
GKP P T L G P + A+ P L+ R
Sbjct: 354 GKPIP------------------TLEPALATESPPGAEAKPTSPTGPSVCASSRPALAKR 395
Query: 350 PAPAAPLLQGPP 361
P + L +GPP
Sbjct: 396 PVASKALCEGPP 407
Score = 38.1 bits (87), Expect = 0.014
Identities = 80/313 (25%), Positives = 107/313 (34%), Gaps = 46/313 (14%)
Query: 7 SRAGPLPLLRQPPIMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPL 66
S A P QPP PP Q LP P PAP S + P + L GP
Sbjct: 212 SAASPFYPPAQPP---PPPGPPQQLPPP--PAPAGSGSSPRADSKPPLPSKLPRPKAGP- 265
Query: 67 LKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPP 126
+ + C+IC+I H G +H ++ EAA+ G +P G A
Sbjct: 266 --RQLQLHYCDICKISCAGPQTYREHLGGQKHRKK----EAAQKTGVQPNGSPRGVQAQL 319
Query: 127 -----GSTPTNGDGVAP--------RPVSMENGLG-PAPG-----SPEKQPGSPSPPSIP 167
+ T D A + + LG P P + E PG+ + P+ P
Sbjct: 320 HCDLCAVSCTGADAYAAHIRGSKHQKVFKLHAKLGKPIPTLEPALATESPPGAEAKPTSP 379
Query: 168 ETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKT 227
TG V PA A P SK E A C+ +Q + G +
Sbjct: 380 -TGPSVCASS--RPALAKRPVASKALCEGPPEP-QAAGCRPQWGKPAQPKLEGPGAPTQG 435
Query: 228 -ILEARSGLGPIKAYPRLGPPTPGEPEAPAQDR----TFHCEICNVKVNSEVQLKQHISS 282
EA +G + P P E D FHC++C N H+
Sbjct: 436 GSKEAPAGCSDAQ------PVGPEYVEEVFSDEGRVLRFHCKLCECSFNDLNAKDLHVRG 489
Query: 283 RRHRDGVAGKPNP 295
RRHR K NP
Sbjct: 490 RRHRLQYRKKVNP 502
>gi|116256475 zinc finger protein 827 [Homo sapiens]
Length = 1077
Score = 45.8 bits (107), Expect = 6e-05
Identities = 62/246 (25%), Positives = 86/246 (34%), Gaps = 39/246 (15%)
Query: 120 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGG 179
P DP PP + + V P P P P P P P P S+ V KG
Sbjct: 311 PEDPLPPPPSEKKPEKVTPPP--------PPPPPP---PPPPPPQSLELLLLPVPKGR-- 357
Query: 180 TPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIK 239
S P S EEE K C +C + + S + H H + + L P +
Sbjct: 358 ----VSKPSNSASEEESGKPF-QCPICGLVIKRKSYWKRHM--VIHTGLKSHQCPLCPFR 410
Query: 240 AYPRLGPPTPGEPEAPAQDR--TFHCEICNVKVNSEVQLKQHISSRRH------------ 285
+ + + QDR TF C++C + LK H+ +H
Sbjct: 411 CARKDNLKSHMKVHQH-QDRGETFQCQLCPFTSSRHFSLKLHMRCHQHFLRTEAKVKEEI 469
Query: 286 -RDGVAGKPNPLLSR---HKKSRGAGELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAA 341
V G P+ S ++ G EL GT+ S ++ GG SPL V
Sbjct: 470 PDPDVKGSPHLSDSACLGQQREGGGTELVGTMMTSNTPERTSQGGAGVSPLLVKEEPKED 529
Query: 342 AGSPLS 347
G P S
Sbjct: 530 NGLPTS 535
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 45.8 bits (107), Expect = 6e-05
Identities = 44/156 (28%), Positives = 61/156 (39%), Gaps = 17/156 (10%)
Query: 112 GREPGVREPGDPAPP---GSTPTNGDGVAPRPVS-MENGLGPAPGSPEKQPGSPSPPSIP 167
G PG P +P PP GS P +G +P+P + +E P P S PGS P+ P
Sbjct: 555 GAGPG--PPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASP 612
Query: 168 ETGQGVTKGEGGTPAPASL-----PGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKG 222
G+ + G GG P L PGG R L+C A +L A +
Sbjct: 613 --GRTLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATGA----PELMALHLQ 666
Query: 223 TKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQD 258
H R + P P+ P +P+Q+
Sbjct: 667 VHHSRRARGRRPPQADASPPYARVPSGETPPSPSQE 702
Score = 34.7 bits (78), Expect = 0.15
Identities = 51/202 (25%), Positives = 71/202 (35%), Gaps = 40/202 (19%)
Query: 9 AGPLPLLRQPPIMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLK 68
A P P QP PP + +P P EP P +P ++A + P
Sbjct: 224 AAPPP---QPQPQPPPQPEPRSVPQP-EPEP-----------EPEREATPTPAPAAPEEP 268
Query: 69 TKRPVISCNICQIRFNSQSQAEAHYKGNR----HARRVKGI---------EAAKTRGREP 115
P C +C F + H + ++ HA V G K +
Sbjct: 269 PAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHASKL 328
Query: 116 G-VREPGDPAPPGSTPTNGDG--VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIP----- 167
G +R PG + P P D +A P+ L PAP E++ PPS+
Sbjct: 329 GPLRAPGPASGPARAPQPPDLGLLAYEPLGPALLLAPAPTPAERR----EPPSLLGYLSL 384
Query: 168 ETGQGVTKGEGGTPAPASLPGG 189
G+G GEG P P GG
Sbjct: 385 RAGEGRPNGEGAEPGPGRSFGG 406
Score = 30.8 bits (68), Expect = 2.2
Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 12/122 (9%)
Query: 247 PTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRR----HRDGVAGK--PNPLLSRH 300
P P PE P F C++C LK H+ + H V G+ P ++
Sbjct: 260 PAPAAPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKN 319
Query: 301 KKSRGAGELAGTLTFSKELPKSLAG-GLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQG 359
A +L G L P +G P P + + G L L PAP +
Sbjct: 320 HMKVHASKL-GPL----RAPGPASGPARAPQPPDLGLLAYEPLGPALLLAPAPTPAERRE 374
Query: 360 PP 361
PP
Sbjct: 375 PP 376
Score = 30.4 bits (67), Expect = 2.8
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 135 GVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEE 194
G RP++ + P P+ P P P S+P+ TP PA + EE
Sbjct: 213 GAPERPLAATSAAPPPQPQPQPPP-QPEPRSVPQPEPEPEPEREATPTPAP----AAPEE 267
Query: 195 EKAKRLLYCALCKVAVNSLSQLEAHNKGTKHK 226
A C +C + L+ H + KHK
Sbjct: 268 PPAPPEFRCQVCGQSFTQSWFLKGHMR--KHK 297
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 45.8 bits (107), Expect = 6e-05
Identities = 44/156 (28%), Positives = 61/156 (39%), Gaps = 17/156 (10%)
Query: 112 GREPGVREPGDPAPP---GSTPTNGDGVAPRPVS-MENGLGPAPGSPEKQPGSPSPPSIP 167
G PG P +P PP GS P +G +P+P + +E P P S PGS P+ P
Sbjct: 555 GAGPG--PPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASP 612
Query: 168 ETGQGVTKGEGGTPAPASL-----PGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKG 222
G+ + G GG P L PGG R L+C A +L A +
Sbjct: 613 --GRTLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATGA----PELMALHLQ 666
Query: 223 TKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQD 258
H R + P P+ P +P+Q+
Sbjct: 667 VHHSRRARGRRPPQADASPPYARVPSGETPPSPSQE 702
Score = 34.7 bits (78), Expect = 0.15
Identities = 51/202 (25%), Positives = 71/202 (35%), Gaps = 40/202 (19%)
Query: 9 AGPLPLLRQPPIMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLK 68
A P P QP PP + +P P EP P +P ++A + P
Sbjct: 224 AAPPP---QPQPQPPPQPEPRSVPQP-EPEP-----------EPEREATPTPAPAAPEEP 268
Query: 69 TKRPVISCNICQIRFNSQSQAEAHYKGNR----HARRVKGI---------EAAKTRGREP 115
P C +C F + H + ++ HA V G K +
Sbjct: 269 PAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHASKL 328
Query: 116 G-VREPGDPAPPGSTPTNGDG--VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIP----- 167
G +R PG + P P D +A P+ L PAP E++ PPS+
Sbjct: 329 GPLRAPGPASGPARAPQPPDLGLLAYEPLGPALLLAPAPTPAERR----EPPSLLGYLSL 384
Query: 168 ETGQGVTKGEGGTPAPASLPGG 189
G+G GEG P P GG
Sbjct: 385 RAGEGRPNGEGAEPGPGRSFGG 406
Score = 30.8 bits (68), Expect = 2.2
Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 12/122 (9%)
Query: 247 PTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRR----HRDGVAGK--PNPLLSRH 300
P P PE P F C++C LK H+ + H V G+ P ++
Sbjct: 260 PAPAAPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKN 319
Query: 301 KKSRGAGELAGTLTFSKELPKSLAG-GLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQG 359
A +L G L P +G P P + + G L L PAP +
Sbjct: 320 HMKVHASKL-GPL----RAPGPASGPARAPQPPDLGLLAYEPLGPALLLAPAPTPAERRE 374
Query: 360 PP 361
PP
Sbjct: 375 PP 376
Score = 30.4 bits (67), Expect = 2.8
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 135 GVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEE 194
G RP++ + P P+ P P P S+P+ TP PA + EE
Sbjct: 213 GAPERPLAATSAAPPPQPQPQPPP-QPEPRSVPQPEPEPEPEREATPTPAP----AAPEE 267
Query: 195 EKAKRLLYCALCKVAVNSLSQLEAHNKGTKHK 226
A C +C + L+ H + KHK
Sbjct: 268 PPAPPEFRCQVCGQSFTQSWFLKGHMR--KHK 297
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 45.8 bits (107), Expect = 6e-05
Identities = 44/156 (28%), Positives = 61/156 (39%), Gaps = 17/156 (10%)
Query: 112 GREPGVREPGDPAPP---GSTPTNGDGVAPRPVS-MENGLGPAPGSPEKQPGSPSPPSIP 167
G PG P +P PP GS P +G +P+P + +E P P S PGS P+ P
Sbjct: 555 GAGPG--PPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASP 612
Query: 168 ETGQGVTKGEGGTPAPASL-----PGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKG 222
G+ + G GG P L PGG R L+C A +L A +
Sbjct: 613 --GRTLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATGA----PELMALHLQ 666
Query: 223 TKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQD 258
H R + P P+ P +P+Q+
Sbjct: 667 VHHSRRARGRRPPQADASPPYARVPSGETPPSPSQE 702
Score = 34.7 bits (78), Expect = 0.15
Identities = 51/202 (25%), Positives = 71/202 (35%), Gaps = 40/202 (19%)
Query: 9 AGPLPLLRQPPIMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLK 68
A P P QP PP + +P P EP P +P ++A + P
Sbjct: 224 AAPPP---QPQPQPPPQPEPRSVPQP-EPEP-----------EPEREATPTPAPAAPEEP 268
Query: 69 TKRPVISCNICQIRFNSQSQAEAHYKGNR----HARRVKGI---------EAAKTRGREP 115
P C +C F + H + ++ HA V G K +
Sbjct: 269 PAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHASKL 328
Query: 116 G-VREPGDPAPPGSTPTNGDG--VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIP----- 167
G +R PG + P P D +A P+ L PAP E++ PPS+
Sbjct: 329 GPLRAPGPASGPARAPQPPDLGLLAYEPLGPALLLAPAPTPAERR----EPPSLLGYLSL 384
Query: 168 ETGQGVTKGEGGTPAPASLPGG 189
G+G GEG P P GG
Sbjct: 385 RAGEGRPNGEGAEPGPGRSFGG 406
Score = 30.8 bits (68), Expect = 2.2
Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 12/122 (9%)
Query: 247 PTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRR----HRDGVAGK--PNPLLSRH 300
P P PE P F C++C LK H+ + H V G+ P ++
Sbjct: 260 PAPAAPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKN 319
Query: 301 KKSRGAGELAGTLTFSKELPKSLAG-GLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQG 359
A +L G L P +G P P + + G L L PAP +
Sbjct: 320 HMKVHASKL-GPL----RAPGPASGPARAPQPPDLGLLAYEPLGPALLLAPAPTPAERRE 374
Query: 360 PP 361
PP
Sbjct: 375 PP 376
Score = 30.4 bits (67), Expect = 2.8
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 135 GVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEE 194
G RP++ + P P+ P P P S+P+ TP PA + EE
Sbjct: 213 GAPERPLAATSAAPPPQPQPQPPP-QPEPRSVPQPEPEPEPEREATPTPAP----AAPEE 267
Query: 195 EKAKRLLYCALCKVAVNSLSQLEAHNKGTKHK 226
A C +C + L+ H + KHK
Sbjct: 268 PPAPPEFRCQVCGQSFTQSWFLKGHMR--KHK 297
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 45.1 bits (105), Expect = 1e-04
Identities = 58/238 (24%), Positives = 84/238 (35%), Gaps = 48/238 (20%)
Query: 105 IEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP-VSMENGLGPAPGSPEKQPGSPSP 163
+ AA+ PG PG P PP + G G A P + + L G P PG SP
Sbjct: 43 VRAARREAASPGT--PGPPPPPPAASGPGPGAAAAPHLLAASILADLRGGPGAAPGGASP 100
Query: 164 PSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLY--CALCKVAVNSLSQLEAHNK 221
S + +P+ PG + K+ R + CA +A+ K
Sbjct: 101 AS--------SSSAASSPSSGRAPGAAPSAAAKSHRCPFPDCA------------KAYYK 140
Query: 222 GTKHKTILEARSGLGPI--------KAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSE 273
+ K+ L +G P K + R ++ F C +C+ +
Sbjct: 141 SSHLKSHLRTHTGERPFACDWQGCDKKFAR-SDELARHHRTHTGEKRFSCPLCSKRFTRS 199
Query: 274 VQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELPKSLAGGLLPSP 331
L +H +RRH +P L R +R S LP SLAG PSP
Sbjct: 200 DHLAKH--ARRHPGF-----HPDLLRRPGARSTSP-------SDSLPCSLAGSPAPSP 243
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 45.1 bits (105), Expect = 1e-04
Identities = 33/105 (31%), Positives = 38/105 (36%), Gaps = 11/105 (10%)
Query: 95 GNRHARRVKGIEAAKTRGREPGVR-EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGS 153
GN + G+ K G PG+ PG P P G +G P GPA
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEG 1249
Query: 154 PEKQPGSPSPPSIPE----------TGQGVTKGEGGTPAPASLPG 188
P+ PG PP P G G KGE G P LPG
Sbjct: 1250 PKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPG 1294
Score = 44.7 bits (104), Expect = 1e-04
Identities = 31/88 (35%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 114 EPGVREPGDPAPPG------STPTNGDGVAPRPVSM--ENGLGPAPG-----SPEKQPGS 160
EPG PG P PPG + GD P P GL PG P QPG
Sbjct: 750 EPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGP 809
Query: 161 PSPPSIPETGQGVTKGEGGTPAPASLPG 188
PP +P G G G P P PG
Sbjct: 810 MGPPGLPGIGVQGPPGPPGIPGPIGQPG 837
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 104 GIEAAKTRGREPGVREPGDPAP---PGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQ--- 157
GI +K PG+ PG P P PG G P + +E GP PG P +
Sbjct: 693 GIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGP-PGFPGPKGEP 751
Query: 158 ----PGSPSPPSIPE-TGQGVTKGEGGTPAPASLPG 188
PG P PP +P G KG+ G P P PG
Sbjct: 752 GFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPG 787
Score = 42.7 bits (99), Expect = 5e-04
Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 112 GREPGVREPGDPAPPGSTPTNG-DGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETG 170
GR+ V PGDP PG G G P GL P P P+ PG P PP P T
Sbjct: 672 GRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGL-PGPPGPKGFPGIPGPPGAPGTP 730
Query: 171 QGVTKGEGGTPAPASLPGGSKE 192
+ G G P P PG E
Sbjct: 731 GRI--GLEGPPGPPGFPGPKGE 750
Score = 42.4 bits (98), Expect = 7e-04
Identities = 35/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVRE-PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG 152
KG + R G+E PG+ PG PPG GD P P + GP PG
Sbjct: 44 KGEKGERGFPGLEG------HPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGP-PG 96
Query: 153 SPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPG--GSKEE 193
P PG+P P +P G G P P +PG G+K E
Sbjct: 97 LP-GFPGTPGLPGMP--------GHDGAPGPQGIPGCNGTKGE 130
Score = 42.4 bits (98), Expect = 7e-04
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 119 EPGDPAPPGSTPTNG----DGV-APRPVSMENGLGPAPGSPEKQPGSPSPPSIPET---- 169
EPG P PPGS G GV + + N +G P QPG P P P +
Sbjct: 452 EPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFP 511
Query: 170 GQGVTKGEGGTPAPASLPG 188
GQ KG+ G P LPG
Sbjct: 512 GQKGEKGQAGATGPKGLPG 530
Score = 42.0 bits (97), Expect = 0.001
Identities = 30/97 (30%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGS 153
KG + G K +PG PG P PG + GDG P + GL G
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLP-GIPGNPGLPGPKGE 1224
Query: 154 P--EKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPG 188
P PG PP P + +G G P P PG
Sbjct: 1225 PGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPG 1261
Score = 41.6 bits (96), Expect = 0.001
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 116 GVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTK 175
G PG P PPG G P P + PG P G+P PP +P G K
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQKG----EPGQPGF--GNPGPPGLP--GLSGQK 1204
Query: 176 GEGGTPAPASLPG 188
G+GG P PG
Sbjct: 1205 GDGGLPGIPGNPG 1217
Score = 37.4 bits (85), Expect = 0.023
Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 114 EPGVR----EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPS-PPSIPE 168
+PG+ E GDP PPG G P G+ APG P PGSP P
Sbjct: 835 QPGLHGIPGEKGDPGPPGLDVPGPPGERGSP-----GIPGAPG-PIGPPGSPGLPGKAGA 888
Query: 169 TGQGVTKGEGGTPAPASLPG 188
+G TKGE G P PG
Sbjct: 889 SGFPGTKGEMGMMGPPGPPG 908
Score = 37.4 bits (85), Expect = 0.023
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 119 EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEG 178
+PG PPG T GD P P +E P P PG P P +P GQ KG+
Sbjct: 1016 QPGLIGPPGLKGTIGDMGFPGPQGVE-----GPPGPSGVPGQPGSPGLP--GQ---KGDK 1065
Query: 179 GTPAPAS--LPG 188
G P +S LPG
Sbjct: 1066 GDPGISSIGLPG 1077
Score = 36.6 bits (83), Expect = 0.039
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 95 GNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGD--GVAPRPVSMEN--GLGPA 150
G + R GI+ PG G P PPG G P +S+ GL
Sbjct: 368 GEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQ 427
Query: 151 PGSPEKQPGSPSP--PSIPETGQGVTKGEGGTPAPASLPG 188
PG+P PG P P P IP + + E G P P PG
Sbjct: 428 PGAP-GLPGPPGPAGPHIPPSDEIC---EPGPPGPPGSPG 463
Score = 36.6 bits (83), Expect = 0.039
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 121 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP--------EKQPGSPSPPSIPETGQG 172
G P PPG G P + ++GL PG P + +PG P PP +
Sbjct: 902 GPPGPPGPLGIPGRSGVPG-LKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLL 960
Query: 173 VTKGEGGTPAPASLPGGS 190
+KGE G P +PG S
Sbjct: 961 GSKGEKGEPGLPGIPGVS 978
Score = 36.2 bits (82), Expect = 0.051
Identities = 30/95 (31%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 111 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEK-----------QPG 159
+G + EPG PG NG P GL PG P + G
Sbjct: 285 KGEKGEQGEPGKRGKPGKDGENGQPGIP-------GLPGDPGYPGEPGRDGEKGQKGDTG 337
Query: 160 SPSPPS--IPETGQGVTKGEGGTPAPASLPGGSKE 192
P PP IP G G+T GE G LPG E
Sbjct: 338 PPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Score = 36.2 bits (82), Expect = 0.051
Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 20/89 (22%)
Query: 104 GIEAAKTRGREPGVREPGDPAPPG----STPTNGDGVAPRPVSMENGLGPAPGSPEKQPG 159
G AK + PG PG P PPG S P G+ P GP G PG
Sbjct: 1110 GTPGAKGQPGLPGF--PGTPGPPGPKGISGPPGNPGLPGEP-------GPVGGGGH--PG 1158
Query: 160 SPSPPSIPETGQGVTKGEGGTPAPASLPG 188
P PP G+ G+ G P PA G
Sbjct: 1159 QPGPP-----GEKGKPGQDGIPGPAGQKG 1182
Score = 35.4 bits (80), Expect = 0.088
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 115 PGVREPGDPAPPGSTPTNGDGVAPRPVSM--------ENGLGPAPGSPEKQPGSPSPPSI 166
PG+ PG P PG G AP P + E G +PG P Q G P PP I
Sbjct: 95 PGL--PGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQ-GPPGPPGI 151
Query: 167 P----ETGQGVT------KGEGGTPAPASLPG 188
P E G + KG G P P + G
Sbjct: 152 PGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQG 183
Score = 35.4 bits (80), Expect = 0.088
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 115 PGVR-EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET---- 169
PG + PG P PPG G P P+ GP PG P G P PP +P
Sbjct: 167 PGPKGNPGYPGPPGIQGLPGPTGIPGPI------GP-PGPPGLM-GPPGPPGLPGPKGNM 218
Query: 170 -----GQGVTKGEGGTPAPASLPGGSKEEE 194
G KGE G P PG E++
Sbjct: 219 GLNFQGPKGEKGEQGLQGPPGPPGQISEQK 248
Score = 35.4 bits (80), Expect = 0.088
Identities = 31/99 (31%), Positives = 36/99 (36%), Gaps = 28/99 (28%)
Query: 120 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQP---------------- 158
PG P P G+ N G P+ E GL PG P +K+P
Sbjct: 209 PGLPGPKGNMGLNFQG--PKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDR 266
Query: 159 GSPSPPSI-----PETGQGVTKGEGGTPAPASLPGGSKE 192
G P PP I P G+ KGE G P PG E
Sbjct: 267 GPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGE 305
Score = 35.4 bits (80), Expect = 0.088
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 120 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEK--------QPGSPSPPSIP---- 167
PGD PPG G P E G PG K QPG P P P
Sbjct: 263 PGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPG 322
Query: 168 ETGQGVTKGEGGTPAPASLPG 188
E G+ KG+ G P PG
Sbjct: 323 EPGRDGEKGQKGDTGPPGPPG 343
Score = 35.4 bits (80), Expect = 0.088
Identities = 32/111 (28%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVREP-------GDPAPPGSTPTNGDGV------APRP 140
KG+ V G K PG P G P PPG +G + P
Sbjct: 1320 KGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPG 1379
Query: 141 VSMENGLG--PAPGSPEKQPGSPSPPSIP-ETGQGVTKGEGGTPAPASLPG 188
+ + GL P P P+ PG PP P G G GG LPG
Sbjct: 1380 IPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPG 1430
Score = 34.3 bits (77), Expect = 0.19
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 119 EPGDPAPPG-STPTNGDGVAPRP----VSMENGLGPAPGSPEKQPGSPSPPS-IPETGQG 172
EPG P PG S P G+ P +S + GL P P P+ PG P P I G
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGL-PGPPGPKGNPGLPGQPGLIGPPGLK 1026
Query: 173 VTKGEGGTPAPASLPG 188
T G+ G P P + G
Sbjct: 1027 GTIGDMGFPGPQGVEG 1042
Score = 33.9 bits (76), Expect = 0.25
Identities = 36/106 (33%), Positives = 40/106 (37%), Gaps = 21/106 (19%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVR----EPGD----PAPPGSTPTNGDGVAPRPVSMEN 145
KG A KG+ PG EPGD P G G AP
Sbjct: 517 KGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAP------- 569
Query: 146 GLGPAPGSPEKQ--PGSPSPPSIPETGQGVT-KGEGGTPAPASLPG 188
GL PG+P + PG P P P G+T KGE G P LPG
Sbjct: 570 GLPGLPGTPGQDGLPGLPGPKGEP---GGITFKGERGPPGNPGLPG 612
Score = 33.5 bits (75), Expect = 0.33
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 115 PGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVT 174
PG+ G P PPG P P+ + GL PG + G P PP + G
Sbjct: 816 PGIGVQGPPGPPG---------IPGPIG-QPGLHGIPG----EKGDPGPPGLDVPG---P 858
Query: 175 KGEGGTPAPASLPG 188
GE G+P PG
Sbjct: 859 PGERGSPGIPGAPG 872
Score = 33.1 bits (74), Expect = 0.43
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 112 GREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG--SPEKQPGSPSPPSIPET 169
G + EPG P PPG P + + + + E GL PG P+ G P P P
Sbjct: 938 GEKGSKGEPGLPGPPG--PMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQP-- 993
Query: 170 GQGVTKGEGGTPAPASLPG 188
G G G P P PG
Sbjct: 994 GLSGQPGLPGPPGPKGNPG 1012
Score = 30.8 bits (68), Expect = 2.2
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 15/75 (20%)
Query: 119 EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQPGSPSPPSIPETGQGV 173
+PG P P G + G+ P P P P P + + G P P IP G
Sbjct: 930 QPGLPGPTGEKGSKGEPGLPGP--------PGPMDPNLLGSKGEKGEPGLPGIP--GVSG 979
Query: 174 TKGEGGTPAPASLPG 188
KG G P PG
Sbjct: 980 PKGYQGLPGDPGQPG 994
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 44.7 bits (104), Expect = 1e-04
Identities = 31/88 (35%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 114 EPGVREPGDPAPPG------STPTNGDGVAPRPVSM--ENGLGPAPG-----SPEKQPGS 160
EPG PG P PPG + GD P P GL PG P QPG
Sbjct: 750 EPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGP 809
Query: 161 PSPPSIPETGQGVTKGEGGTPAPASLPG 188
PP +P G G G P P PG
Sbjct: 810 MGPPGLPGIGVQGPPGPPGIPGPIGQPG 837
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 104 GIEAAKTRGREPGVREPGDPAP---PGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQ--- 157
GI +K PG+ PG P P PG G P + +E GP PG P +
Sbjct: 693 GIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGP-PGFPGPKGEP 751
Query: 158 ----PGSPSPPSIPE-TGQGVTKGEGGTPAPASLPG 188
PG P PP +P G KG+ G P P PG
Sbjct: 752 GFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPG 787
Score = 42.7 bits (99), Expect = 5e-04
Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 112 GREPGVREPGDPAPPGSTPTNG-DGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETG 170
GR+ V PGDP PG G G P GL P P P+ PG P PP P T
Sbjct: 672 GRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGL-PGPPGPKGFPGIPGPPGAPGTP 730
Query: 171 QGVTKGEGGTPAPASLPGGSKE 192
+ G G P P PG E
Sbjct: 731 GRI--GLEGPPGPPGFPGPKGE 750
Score = 42.7 bits (99), Expect = 5e-04
Identities = 33/111 (29%), Positives = 38/111 (34%), Gaps = 17/111 (15%)
Query: 95 GNRHARRVKGIEAAKTRGREPGVR-EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGS 153
GN + G+ K G PG+ PG P P G +G P GPA
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEG 1249
Query: 154 PEKQPGSPSPPSIPE----------------TGQGVTKGEGGTPAPASLPG 188
P+ PG PP P G G KGE G P LPG
Sbjct: 1250 PKGNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPG 1300
Score = 42.4 bits (98), Expect = 7e-04
Identities = 35/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVRE-PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG 152
KG + R G+E PG+ PG PPG GD P P + GP PG
Sbjct: 44 KGEKGERGFPGLEG------HPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGP-PG 96
Query: 153 SPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPG--GSKEE 193
P PG+P P +P G G P P +PG G+K E
Sbjct: 97 LP-GFPGTPGLPGMP--------GHDGAPGPQGIPGCNGTKGE 130
Score = 42.4 bits (98), Expect = 7e-04
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 119 EPGDPAPPGSTPTNG----DGV-APRPVSMENGLGPAPGSPEKQPGSPSPPSIPET---- 169
EPG P PPGS G GV + + N +G P QPG P P P +
Sbjct: 452 EPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFP 511
Query: 170 GQGVTKGEGGTPAPASLPG 188
GQ KG+ G P LPG
Sbjct: 512 GQKGEKGQAGATGPKGLPG 530
Score = 42.0 bits (97), Expect = 0.001
Identities = 30/97 (30%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGS 153
KG + G K +PG PG P PG + GDG P + GL G
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLP-GIPGNPGLPGPKGE 1224
Query: 154 P--EKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPG 188
P PG PP P + +G G P P PG
Sbjct: 1225 PGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPG 1261
Score = 41.6 bits (96), Expect = 0.001
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 116 GVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTK 175
G PG P PPG G P P + PG P G+P PP +P G K
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQKG----EPGQPGF--GNPGPPGLP--GLSGQK 1204
Query: 176 GEGGTPAPASLPG 188
G+GG P PG
Sbjct: 1205 GDGGLPGIPGNPG 1217
Score = 37.4 bits (85), Expect = 0.023
Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 114 EPGVR----EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPS-PPSIPE 168
+PG+ E GDP PPG G P G+ APG P PGSP P
Sbjct: 835 QPGLHGIPGEKGDPGPPGLDVPGPPGERGSP-----GIPGAPG-PIGPPGSPGLPGKAGA 888
Query: 169 TGQGVTKGEGGTPAPASLPG 188
+G TKGE G P PG
Sbjct: 889 SGFPGTKGEMGMMGPPGPPG 908
Score = 37.4 bits (85), Expect = 0.023
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 119 EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEG 178
+PG PPG T GD P P +E P P PG P P +P GQ KG+
Sbjct: 1016 QPGLIGPPGLKGTIGDMGFPGPQGVE-----GPPGPSGVPGQPGSPGLP--GQ---KGDK 1065
Query: 179 GTPAPAS--LPG 188
G P +S LPG
Sbjct: 1066 GDPGISSIGLPG 1077
Score = 36.6 bits (83), Expect = 0.039
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 95 GNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGD--GVAPRPVSMEN--GLGPA 150
G + R GI+ PG G P PPG G P +S+ GL
Sbjct: 368 GEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQ 427
Query: 151 PGSPEKQPGSPSP--PSIPETGQGVTKGEGGTPAPASLPG 188
PG+P PG P P P IP + + E G P P PG
Sbjct: 428 PGAP-GLPGPPGPAGPHIPPSDEIC---EPGPPGPPGSPG 463
Score = 36.6 bits (83), Expect = 0.039
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 121 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP--------EKQPGSPSPPSIPETGQG 172
G P PPG G P + ++GL PG P + +PG P PP +
Sbjct: 902 GPPGPPGPLGIPGRSGVPG-LKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLL 960
Query: 173 VTKGEGGTPAPASLPGGS 190
+KGE G P +PG S
Sbjct: 961 GSKGEKGEPGLPGIPGVS 978
Score = 36.2 bits (82), Expect = 0.051
Identities = 30/95 (31%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 111 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEK-----------QPG 159
+G + EPG PG NG P GL PG P + G
Sbjct: 285 KGEKGEQGEPGKRGKPGKDGENGQPGIP-------GLPGDPGYPGEPGRDGEKGQKGDTG 337
Query: 160 SPSPPS--IPETGQGVTKGEGGTPAPASLPGGSKE 192
P PP IP G G+T GE G LPG E
Sbjct: 338 PPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Score = 36.2 bits (82), Expect = 0.051
Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 20/89 (22%)
Query: 104 GIEAAKTRGREPGVREPGDPAPPG----STPTNGDGVAPRPVSMENGLGPAPGSPEKQPG 159
G AK + PG PG P PPG S P G+ P GP G PG
Sbjct: 1110 GTPGAKGQPGLPGF--PGTPGPPGPKGISGPPGNPGLPGEP-------GPVGGGGH--PG 1158
Query: 160 SPSPPSIPETGQGVTKGEGGTPAPASLPG 188
P PP G+ G+ G P PA G
Sbjct: 1159 QPGPP-----GEKGKPGQDGIPGPAGQKG 1182
Score = 35.4 bits (80), Expect = 0.088
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 115 PGVREPGDPAPPGSTPTNGDGVAPRPVSM--------ENGLGPAPGSPEKQPGSPSPPSI 166
PG+ PG P PG G AP P + E G +PG P Q G P PP I
Sbjct: 95 PGL--PGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQ-GPPGPPGI 151
Query: 167 P----ETGQGVT------KGEGGTPAPASLPG 188
P E G + KG G P P + G
Sbjct: 152 PGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQG 183
Score = 35.4 bits (80), Expect = 0.088
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 115 PGVR-EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET---- 169
PG + PG P PPG G P P+ GP PG P G P PP +P
Sbjct: 167 PGPKGNPGYPGPPGIQGLPGPTGIPGPI------GP-PGPPGLM-GPPGPPGLPGPKGNM 218
Query: 170 -----GQGVTKGEGGTPAPASLPGGSKEEE 194
G KGE G P PG E++
Sbjct: 219 GLNFQGPKGEKGEQGLQGPPGPPGQISEQK 248
Score = 35.4 bits (80), Expect = 0.088
Identities = 31/99 (31%), Positives = 36/99 (36%), Gaps = 28/99 (28%)
Query: 120 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQP---------------- 158
PG P P G+ N G P+ E GL PG P +K+P
Sbjct: 209 PGLPGPKGNMGLNFQG--PKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDR 266
Query: 159 GSPSPPSI-----PETGQGVTKGEGGTPAPASLPGGSKE 192
G P PP I P G+ KGE G P PG E
Sbjct: 267 GPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGE 305
Score = 35.4 bits (80), Expect = 0.088
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 120 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEK--------QPGSPSPPSIP---- 167
PGD PPG G P E G PG K QPG P P P
Sbjct: 263 PGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPG 322
Query: 168 ETGQGVTKGEGGTPAPASLPG 188
E G+ KG+ G P PG
Sbjct: 323 EPGRDGEKGQKGDTGPPGPPG 343
Score = 35.4 bits (80), Expect = 0.088
Identities = 32/111 (28%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVREP-------GDPAPPGSTPTNGDGV------APRP 140
KG+ V G K PG P G P PPG +G + P
Sbjct: 1326 KGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPG 1385
Query: 141 VSMENGLG--PAPGSPEKQPGSPSPPSIP-ETGQGVTKGEGGTPAPASLPG 188
+ + GL P P P+ PG PP P G G GG LPG
Sbjct: 1386 IPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPG 1436
Score = 34.3 bits (77), Expect = 0.19
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 119 EPGDPAPPG-STPTNGDGVAPRP----VSMENGLGPAPGSPEKQPGSPSPPS-IPETGQG 172
EPG P PG S P G+ P +S + GL P P P+ PG P P I G
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGL-PGPPGPKGNPGLPGQPGLIGPPGLK 1026
Query: 173 VTKGEGGTPAPASLPG 188
T G+ G P P + G
Sbjct: 1027 GTIGDMGFPGPQGVEG 1042
Score = 33.9 bits (76), Expect = 0.25
Identities = 36/106 (33%), Positives = 40/106 (37%), Gaps = 21/106 (19%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVR----EPGD----PAPPGSTPTNGDGVAPRPVSMEN 145
KG A KG+ PG EPGD P G G AP
Sbjct: 517 KGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAP------- 569
Query: 146 GLGPAPGSPEKQ--PGSPSPPSIPETGQGVT-KGEGGTPAPASLPG 188
GL PG+P + PG P P P G+T KGE G P LPG
Sbjct: 570 GLPGLPGTPGQDGLPGLPGPKGEP---GGITFKGERGPPGNPGLPG 612
Score = 33.5 bits (75), Expect = 0.33
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 115 PGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVT 174
PG+ G P PPG P P+ + GL PG + G P PP + G
Sbjct: 816 PGIGVQGPPGPPG---------IPGPIG-QPGLHGIPG----EKGDPGPPGLDVPG---P 858
Query: 175 KGEGGTPAPASLPG 188
GE G+P PG
Sbjct: 859 PGERGSPGIPGAPG 872
Score = 33.1 bits (74), Expect = 0.43
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 112 GREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG--SPEKQPGSPSPPSIPET 169
G + EPG P PPG P + + + + E GL PG P+ G P P P
Sbjct: 938 GEKGSKGEPGLPGPPG--PMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQP-- 993
Query: 170 GQGVTKGEGGTPAPASLPG 188
G G G P P PG
Sbjct: 994 GLSGQPGLPGPPGPKGNPG 1012
Score = 30.8 bits (68), Expect = 2.2
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 15/75 (20%)
Query: 119 EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQPGSPSPPSIPETGQGV 173
+PG P P G + G+ P P P P P + + G P P IP G
Sbjct: 930 QPGLPGPTGEKGSKGEPGLPGP--------PGPMDPNLLGSKGEKGEPGLPGIP--GVSG 979
Query: 174 TKGEGGTPAPASLPG 188
KG G P PG
Sbjct: 980 PKGYQGLPGDPGQPG 994
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 44.7 bits (104), Expect = 1e-04
Identities = 31/88 (35%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 114 EPGVREPGDPAPPG------STPTNGDGVAPRPVSM--ENGLGPAPG-----SPEKQPGS 160
EPG PG P PPG + GD P P GL PG P QPG
Sbjct: 750 EPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGP 809
Query: 161 PSPPSIPETGQGVTKGEGGTPAPASLPG 188
PP +P G G G P P PG
Sbjct: 810 MGPPGLPGIGVQGPPGPPGIPGPIGQPG 837
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 104 GIEAAKTRGREPGVREPGDPAP---PGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQ--- 157
GI +K PG+ PG P P PG G P + +E GP PG P +
Sbjct: 693 GIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGP-PGFPGPKGEP 751
Query: 158 ----PGSPSPPSIPE-TGQGVTKGEGGTPAPASLPG 188
PG P PP +P G KG+ G P P PG
Sbjct: 752 GFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPG 787
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 14/108 (12%)
Query: 95 GNRHARRVKGIEAAKTRGREPGVR-EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGS 153
GN + G+ K G PG+ PG P P G +G P GPA
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEG 1249
Query: 154 PEKQPGSPSPPSIPE-------------TGQGVTKGEGGTPAPASLPG 188
P+ PG PP P G G KGE G P LPG
Sbjct: 1250 PKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPG 1297
Score = 42.7 bits (99), Expect = 5e-04
Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 112 GREPGVREPGDPAPPGSTPTNG-DGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETG 170
GR+ V PGDP PG G G P GL P P P+ PG P PP P T
Sbjct: 672 GRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGL-PGPPGPKGFPGIPGPPGAPGTP 730
Query: 171 QGVTKGEGGTPAPASLPGGSKE 192
+ G G P P PG E
Sbjct: 731 GRI--GLEGPPGPPGFPGPKGE 750
Score = 42.4 bits (98), Expect = 7e-04
Identities = 35/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVRE-PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG 152
KG + R G+E PG+ PG PPG GD P P + GP PG
Sbjct: 44 KGEKGERGFPGLEG------HPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGP-PG 96
Query: 153 SPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPG--GSKEE 193
P PG+P P +P G G P P +PG G+K E
Sbjct: 97 LP-GFPGTPGLPGMP--------GHDGAPGPQGIPGCNGTKGE 130
Score = 42.4 bits (98), Expect = 7e-04
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 119 EPGDPAPPGSTPTNG----DGV-APRPVSMENGLGPAPGSPEKQPGSPSPPSIPET---- 169
EPG P PPGS G GV + + N +G P QPG P P P +
Sbjct: 452 EPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFP 511
Query: 170 GQGVTKGEGGTPAPASLPG 188
GQ KG+ G P LPG
Sbjct: 512 GQKGEKGQAGATGPKGLPG 530
Score = 42.0 bits (97), Expect = 0.001
Identities = 30/97 (30%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGS 153
KG + G K +PG PG P PG + GDG P + GL G
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLP-GIPGNPGLPGPKGE 1224
Query: 154 P--EKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPG 188
P PG PP P + +G G P P PG
Sbjct: 1225 PGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPG 1261
Score = 41.6 bits (96), Expect = 0.001
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 116 GVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTK 175
G PG P PPG G P P + PG P G+P PP +P G K
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQKG----EPGQPGF--GNPGPPGLP--GLSGQK 1204
Query: 176 GEGGTPAPASLPG 188
G+GG P PG
Sbjct: 1205 GDGGLPGIPGNPG 1217
Score = 37.4 bits (85), Expect = 0.023
Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 114 EPGVR----EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPS-PPSIPE 168
+PG+ E GDP PPG G P G+ APG P PGSP P
Sbjct: 835 QPGLHGIPGEKGDPGPPGLDVPGPPGERGSP-----GIPGAPG-PIGPPGSPGLPGKAGA 888
Query: 169 TGQGVTKGEGGTPAPASLPG 188
+G TKGE G P PG
Sbjct: 889 SGFPGTKGEMGMMGPPGPPG 908
Score = 37.4 bits (85), Expect = 0.023
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 119 EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEG 178
+PG PPG T GD P P +E P P PG P P +P GQ KG+
Sbjct: 1016 QPGLIGPPGLKGTIGDMGFPGPQGVE-----GPPGPSGVPGQPGSPGLP--GQ---KGDK 1065
Query: 179 GTPAPAS--LPG 188
G P +S LPG
Sbjct: 1066 GDPGISSIGLPG 1077
Score = 36.6 bits (83), Expect = 0.039
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 95 GNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGD--GVAPRPVSMEN--GLGPA 150
G + R GI+ PG G P PPG G P +S+ GL
Sbjct: 368 GEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQ 427
Query: 151 PGSPEKQPGSPSP--PSIPETGQGVTKGEGGTPAPASLPG 188
PG+P PG P P P IP + + E G P P PG
Sbjct: 428 PGAP-GLPGPPGPAGPHIPPSDEIC---EPGPPGPPGSPG 463
Score = 36.6 bits (83), Expect = 0.039
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 121 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP--------EKQPGSPSPPSIPETGQG 172
G P PPG G P + ++GL PG P + +PG P PP +
Sbjct: 902 GPPGPPGPLGIPGRSGVPG-LKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLL 960
Query: 173 VTKGEGGTPAPASLPGGS 190
+KGE G P +PG S
Sbjct: 961 GSKGEKGEPGLPGIPGVS 978
Score = 36.2 bits (82), Expect = 0.051
Identities = 30/95 (31%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 111 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEK-----------QPG 159
+G + EPG PG NG P GL PG P + G
Sbjct: 285 KGEKGEQGEPGKRGKPGKDGENGQPGIP-------GLPGDPGYPGEPGRDGEKGQKGDTG 337
Query: 160 SPSPPS--IPETGQGVTKGEGGTPAPASLPGGSKE 192
P PP IP G G+T GE G LPG E
Sbjct: 338 PPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Score = 36.2 bits (82), Expect = 0.051
Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 20/89 (22%)
Query: 104 GIEAAKTRGREPGVREPGDPAPPG----STPTNGDGVAPRPVSMENGLGPAPGSPEKQPG 159
G AK + PG PG P PPG S P G+ P GP G PG
Sbjct: 1110 GTPGAKGQPGLPGF--PGTPGPPGPKGISGPPGNPGLPGEP-------GPVGGGGH--PG 1158
Query: 160 SPSPPSIPETGQGVTKGEGGTPAPASLPG 188
P PP G+ G+ G P PA G
Sbjct: 1159 QPGPP-----GEKGKPGQDGIPGPAGQKG 1182
Score = 35.4 bits (80), Expect = 0.088
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 115 PGVREPGDPAPPGSTPTNGDGVAPRPVSM--------ENGLGPAPGSPEKQPGSPSPPSI 166
PG+ PG P PG G AP P + E G +PG P Q G P PP I
Sbjct: 95 PGL--PGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQ-GPPGPPGI 151
Query: 167 P----ETGQGVT------KGEGGTPAPASLPG 188
P E G + KG G P P + G
Sbjct: 152 PGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQG 183
Score = 35.4 bits (80), Expect = 0.088
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 115 PGVR-EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPET---- 169
PG + PG P PPG G P P+ GP PG P G P PP +P
Sbjct: 167 PGPKGNPGYPGPPGIQGLPGPTGIPGPI------GP-PGPPGLM-GPPGPPGLPGPKGNM 218
Query: 170 -----GQGVTKGEGGTPAPASLPGGSKEEE 194
G KGE G P PG E++
Sbjct: 219 GLNFQGPKGEKGEQGLQGPPGPPGQISEQK 248
Score = 35.4 bits (80), Expect = 0.088
Identities = 31/99 (31%), Positives = 36/99 (36%), Gaps = 28/99 (28%)
Query: 120 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQP---------------- 158
PG P P G+ N G P+ E GL PG P +K+P
Sbjct: 209 PGLPGPKGNMGLNFQG--PKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDR 266
Query: 159 GSPSPPSI-----PETGQGVTKGEGGTPAPASLPGGSKE 192
G P PP I P G+ KGE G P PG E
Sbjct: 267 GPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGE 305
Score = 35.4 bits (80), Expect = 0.088
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 120 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEK--------QPGSPSPPSIP---- 167
PGD PPG G P E G PG K QPG P P P
Sbjct: 263 PGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPG 322
Query: 168 ETGQGVTKGEGGTPAPASLPG 188
E G+ KG+ G P PG
Sbjct: 323 EPGRDGEKGQKGDTGPPGPPG 343
Score = 35.4 bits (80), Expect = 0.088
Identities = 32/111 (28%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVREP-------GDPAPPGSTPTNGDGV------APRP 140
KG+ V G K PG P G P PPG +G + P
Sbjct: 1323 KGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPG 1382
Query: 141 VSMENGLG--PAPGSPEKQPGSPSPPSIP-ETGQGVTKGEGGTPAPASLPG 188
+ + GL P P P+ PG PP P G G GG LPG
Sbjct: 1383 IPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPG 1433
Score = 34.3 bits (77), Expect = 0.19
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 119 EPGDPAPPG-STPTNGDGVAPRP----VSMENGLGPAPGSPEKQPGSPSPPS-IPETGQG 172
EPG P PG S P G+ P +S + GL P P P+ PG P P I G
Sbjct: 968 EPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGL-PGPPGPKGNPGLPGQPGLIGPPGLK 1026
Query: 173 VTKGEGGTPAPASLPG 188
T G+ G P P + G
Sbjct: 1027 GTIGDMGFPGPQGVEG 1042
Score = 33.9 bits (76), Expect = 0.25
Identities = 36/106 (33%), Positives = 40/106 (37%), Gaps = 21/106 (19%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVR----EPGD----PAPPGSTPTNGDGVAPRPVSMEN 145
KG A KG+ PG EPGD P G G AP
Sbjct: 517 KGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAP------- 569
Query: 146 GLGPAPGSPEKQ--PGSPSPPSIPETGQGVT-KGEGGTPAPASLPG 188
GL PG+P + PG P P P G+T KGE G P LPG
Sbjct: 570 GLPGLPGTPGQDGLPGLPGPKGEP---GGITFKGERGPPGNPGLPG 612
Score = 33.5 bits (75), Expect = 0.33
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 115 PGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVT 174
PG+ G P PPG P P+ + GL PG + G P PP + G
Sbjct: 816 PGIGVQGPPGPPG---------IPGPIG-QPGLHGIPG----EKGDPGPPGLDVPG---P 858
Query: 175 KGEGGTPAPASLPG 188
GE G+P PG
Sbjct: 859 PGERGSPGIPGAPG 872
Score = 33.1 bits (74), Expect = 0.43
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 112 GREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPG--SPEKQPGSPSPPSIPET 169
G + EPG P PPG P + + + + E GL PG P+ G P P P
Sbjct: 938 GEKGSKGEPGLPGPPG--PMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQP-- 993
Query: 170 GQGVTKGEGGTPAPASLPG 188
G G G P P PG
Sbjct: 994 GLSGQPGLPGPPGPKGNPG 1012
Score = 30.8 bits (68), Expect = 2.2
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 15/75 (20%)
Query: 119 EPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQPGSPSPPSIPETGQGV 173
+PG P P G + G+ P P P P P + + G P P IP G
Sbjct: 930 QPGLPGPTGEKGSKGEPGLPGP--------PGPMDPNLLGSKGEKGEPGLPGIP--GVSG 979
Query: 174 TKGEGGTPAPASLPG 188
KG G P PG
Sbjct: 980 PKGYQGLPGDPGQPG 994
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 44.7 bits (104), Expect = 1e-04
Identities = 55/224 (24%), Positives = 84/224 (37%), Gaps = 39/224 (17%)
Query: 167 PETGQGVTKGEGGTPAPASLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKH- 225
PE G + G P P G S K R C +C + + L H + KH
Sbjct: 668 PEPGGSCVYCKTGQPHPRLARGESYTCGYKPFR---CEVCNYSTTTKGNLSIHMQSDKHL 724
Query: 226 KTILEARSGLG----------PIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQ 275
+ ++G G P + G P+P +P+ Q T+ CE+C+ + N
Sbjct: 725 NNVQNLQNGNGEQVFGHSAPAPNTSLSGCGTPSPSKPK---QKPTWRCEVCDYETNVARN 781
Query: 276 LKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELAGTLTFSKELPK-------SLAGGLL 328
L+ H++S +H + LL ++ K G EL + L G L
Sbjct: 782 LRIHMTSEKHMHNMM-----LLQQNMKQIQHNLHLGLAPAEAELYQYYLAQNIGLTGMKL 836
Query: 329 PSPLAVAAVMAAAAGSPLSLRPAPAAPLLQG-----PPITHPLL 367
+P ++ +P L PA AA L G P I+ P L
Sbjct: 837 ENPADPQLMI-----NPFQLDPATAAALAPGLGELSPYISDPAL 875
Score = 40.8 bits (94), Expect = 0.002
Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 20/179 (11%)
Query: 128 STPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEG-GTPAPASL 186
++ + A P + G + +P + +PS P P G + G G P ++
Sbjct: 562 ASASKDSATAAHPSEIARGDEDSSATPHQHGFTPSTPGTPGPGGDGSPGSGIECPKCDTV 621
Query: 187 PGGSKE--------EEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPI 238
G S+ + + L C C LEAH K E G
Sbjct: 622 LGSSRSLGGHMTMMHSRNSCKTLKCPKCNWHYKYQQTLEAHMK--------EKHPEPGGS 673
Query: 239 KAYPRLGPPTPGEPEAPAQD---RTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPN 294
Y + G P P + + F CE+CN ++ L H+ S +H + V N
Sbjct: 674 CVYCKTGQPHPRLARGESYTCGYKPFRCEVCNYSTTTKGNLSIHMQSDKHLNNVQNLQN 732
Score = 39.3 bits (90), Expect = 0.006
Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 18/192 (9%)
Query: 187 PGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGP 246
P + E+ R C +CK + + L H H L+ K
Sbjct: 1482 PNFTMEKFLDPSRPYKCTVCKESFTQKNILLVHYNSVSHLHKLK--------KVLQEASS 1533
Query: 247 PTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGA 306
P P E + ++ + C ICNV + L+ H+ S H+ +R K +
Sbjct: 1534 PVPQETNSNTDNKPYKCSICNVAYSQSSTLEIHMRSVLHQ---------TKARAAKLEPS 1584
Query: 307 GELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRPAPAAPLLQGPPITHPL 366
G +AG + + + S G+L S A L L+ P HP
Sbjct: 1585 GHVAGGHSIAANV-NSPGQGMLDSMSLAAVNSKDTHLDAKELNKKQTPDLISAQPAHHPP 1643
Query: 367 LHPAPGPIRTAH 378
PA ++ H
Sbjct: 1644 QSPAQIQMQLQH 1655
Score = 33.1 bits (74), Expect = 0.43
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 184 ASLPGGSKEEEEKAKRL-------LYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLG 236
A + G K E + K + L C C NS+ +L H +H+ L
Sbjct: 949 AHIKEGGKSNEWRLKCIAIGNPVHLKCNACDYYTNSVDKLRLHTTNHRHEAAL------- 1001
Query: 237 PIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHR 286
K Y L E + ++C +C+ ++ L QH+ S +H+
Sbjct: 1002 --KLYKHLQKQ---EGAVNPESCYYYCAVCDYTTKVKLNLVQHVRSVKHQ 1046
Score = 30.0 bits (66), Expect = 3.7
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 320 PKSLAG------GLLPSPLAVAAVMAAAAGSP-LSLRPAPAAPLLQGPPITHPLLHPAP 371
P SL G L P + +A SP LSL AP PLLQ PP P P P
Sbjct: 3070 PSSLPGFPQNSNTLTPPGAGMLGFPTSATSSPALSLSSAPTKPLLQTPPPPPPPPPPPP 3128
Score = 28.9 bits (63), Expect = 8.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 263 CEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHK 301
C +C VK ++ + ++ HI S++H V L R K
Sbjct: 2964 CTLCGVKYSARLSIRDHIFSKQHISKVRETVGSQLDREK 3002
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 43.9 bits (102), Expect = 2e-04
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGS 153
+G + A+ G+E G+ + G P PG G P PV E GL +PG
Sbjct: 1404 QGEKGAKGEAGLEGPP--GKTGPIGPQGAPGKPGPDGLRG---IPGPVG-EQGLPGSPG- 1456
Query: 154 PEKQPGSPSPPSIPET-GQGVTKGEGGTPAPASLPGGSKEEEEKAKR 199
P+ PG PP +P G KGE G P L G E+ EK R
Sbjct: 1457 PDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDR 1503
Score = 42.7 bits (99), Expect = 5e-04
Identities = 33/97 (34%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDG--VAPRPVSMENGLGPAP 151
KG+R + G+ K +PG G P PPG GD V PR + E G
Sbjct: 627 KGDRGFDGLAGLPGEKGHRGDPG--PSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLL 684
Query: 152 GSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPG 188
G P+ PG P PP + TG G G P PG
Sbjct: 685 G-PKGPPGPPGPPGV--TGMDGQPGPKGNVGPQGEPG 718
Score = 39.7 bits (91), Expect = 0.005
Identities = 37/120 (30%), Positives = 48/120 (40%), Gaps = 6/120 (5%)
Query: 85 SQSQAEAHYKGNRHARRVKGIEAAKTRGREPG-VREPGDPAPPGSTPTNGDGVAPRPVSM 143
S + E +G + KG E + PG V G P PPG GD P
Sbjct: 1194 SGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGP 1253
Query: 144 ENGLGP--APGS--PEKQPGS-PSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEEKAK 198
GP APG+ P+ PG +P ++ E G+ GE G P PG E EK +
Sbjct: 1254 PGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGE 1313
Score = 38.1 bits (87), Expect = 0.014
Identities = 34/99 (34%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 102 VKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSM-----ENGL-GPA-PGSP 154
+KG K PG+ G PPG GD P P E G+ GP+ P P
Sbjct: 1472 LKGDSGPKGEKGHPGLI--GLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGP 1529
Query: 155 EKQPGSPSPPSIPETGQGVT-----KGEGGTPAPASLPG 188
PG P PP P+ +G + KGE G P P PG
Sbjct: 1530 PGPPGLPGPPG-PKGAKGSSGPTGPKGEAGHPGPPGPPG 1567
Score = 37.4 bits (85), Expect = 0.023
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 120 PGDPAPPGSTPTNGDGVAPRPVSMENGLGPA----PGSPEKQPGSPSPPS---IPETGQG 172
PG P G T G P P + GP P PG P PP +P G
Sbjct: 975 PGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLP--GLA 1032
Query: 173 VTKGEGGTPAPASLPG 188
+G G P PA LPG
Sbjct: 1033 GKEGTKGDPGPAGLPG 1048
Score = 37.4 bits (85), Expect = 0.023
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 120 PGDPAPPGSTPTNGDGVAPRPVSMENGLGP-APGSPEKQPGSPSP--PSIPETGQGVTKG 176
PG P P GS G A P+ + GP P P + G+P P P G+ +G
Sbjct: 1080 PGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGP-AGRDGLQG 1138
Query: 177 EGGTPAPASLPGGSKEEEEKAK 198
G P PA G E+ +K +
Sbjct: 1139 PVGLPGPAGPVGPPGEDGDKGE 1160
Score = 36.6 bits (83), Expect = 0.039
Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 111 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETG 170
+G V PGDP PPG G P + G PG Q GSP P E G
Sbjct: 1335 KGSPGPVGFPGDPGPPGEPGPAGQDGPPG----DKGDDGEPG----QTGSPGPTG--EPG 1384
Query: 171 QGVTKGEGGTPAPASLPGGSKEEEEKAK 198
G+ G P PA G E+ K +
Sbjct: 1385 PSGPPGKRGPPGPAGPEGRQGEKGAKGE 1412
Score = 35.4 bits (80), Expect = 0.088
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 13/86 (15%)
Query: 112 GREPGVREPGDPAPPGSTPTNGD-------GVAPRPVSMENGLGPAPGSP--EKQPGSPS 162
G + G PG P P G G G+ +P N G P P E+ P P
Sbjct: 895 GEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQ 954
Query: 163 PPSIPETGQGVTKGEGGTPAPASLPG 188
P TG KG G P LPG
Sbjct: 955 GP----TGFPGPKGPPGPPGKDGLPG 976
Score = 33.9 bits (76), Expect = 0.25
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 20/88 (22%)
Query: 114 EPGVR-------EPGDPAPPGSTPTNGDGVAPRPVSMENGLGP--APGSPEKQPGSPSPP 164
EPG R PG P PPG T +G P P + +GP PG P +Q G+P
Sbjct: 677 EPGPRGLLGPKGPPGPPGPPGVTGMDGQ---PGP---KGNVGPQGEPGPPGQQ-GNPGAQ 729
Query: 165 SIP----ETGQGVTKGEGGTPAPASLPG 188
+P G KG G P +PG
Sbjct: 730 GLPGPQGAIGPPGEKGPLGKPGLPGMPG 757
Score = 33.9 bits (76), Expect = 0.25
Identities = 25/80 (31%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 115 PGVREPGDPAPP----GSTPTNGDGVAPRPVSMENGLGP--APGSPEKQPGSPSPPSIPE 168
PG R P PA P G G+ P +GP APG P P + E
Sbjct: 1389 PGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGE 1448
Query: 169 TGQGVTKGEGGTPAPASLPG 188
G + G G P P PG
Sbjct: 1449 QGLPGSPGPDGPPGPMGPPG 1468
Score = 33.5 bits (75), Expect = 0.33
Identities = 29/107 (27%), Positives = 36/107 (33%), Gaps = 26/107 (24%)
Query: 112 GREPGVREPGDPAPPGSTPTNGDGVAPRPVSM-----ENGLGPAPGSPEKQ--------- 157
G V E G+P G G+G P P E+G A G P +
Sbjct: 1276 GNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPK 1335
Query: 158 --------PGSPSPPSIP----ETGQGVTKGEGGTPAPASLPGGSKE 192
PG P PP P + G KG+ G P PG + E
Sbjct: 1336 GSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGE 1382
Score = 33.1 bits (74), Expect = 0.43
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 130 PTNGDGVAPRPVSMENG-LGPAPGSPEKQPGSPSPP-SIPETGQGVTKGEGGTPAPASLP 187
P G P +E G L P PE G P PP ++ TGQ GE G P LP
Sbjct: 448 PRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLP 507
Query: 188 G 188
G
Sbjct: 508 G 508
Score = 33.1 bits (74), Expect = 0.43
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 112 GREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGP--------APGSPEKQPGSPSP 163
G + V G+P PPG G P P + +GP PG P PG+ P
Sbjct: 706 GPKGNVGPQGEPGPPGQQGNPGAQGLPGP---QGAIGPPGEKGPLGKPGLP-GMPGADGP 761
Query: 164 PSIP-ETGQGVTKGEGGTPAP 183
P P + G KG G P P
Sbjct: 762 PGHPGKEGPPGEKGGQGPPGP 782
Score = 33.1 bits (74), Expect = 0.43
Identities = 27/88 (30%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 110 TRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLG----PAPGSPEKQPGSPSPPS 165
T+G PG PPG GD P PV G P P P PG P
Sbjct: 1037 TKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGP-- 1094
Query: 166 IPETGQGVTKGEGGTPAPASLPGGSKEE 193
G G G P P PG + E+
Sbjct: 1095 ---AGAAGPIGIPGRPGPQGPPGPAGEK 1119
Score = 32.7 bits (73), Expect = 0.57
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 112 GREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLG-PAPGSPEKQPGSPSPPSI-PET 169
G + E G+P GS G+ P P + +G P P + +PG + +
Sbjct: 1153 GEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQK 1212
Query: 170 GQGVTKGEGGTPAPASLPG 188
G +G G P P L G
Sbjct: 1213 GDEGPRGFPGPPGPVGLQG 1231
Score = 32.0 bits (71), Expect = 0.97
Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 19/129 (14%)
Query: 63 GGPLLKTKRPVISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGD 122
GG +K P++S +SQA+A + R A R T GR PG
Sbjct: 528 GGGDAGSKGPMVSAQ--------ESQAQAILQQARLALRGPAGPMGLT-GR------PGP 572
Query: 123 PAPPGSTPTNGD--GVAPR-PVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGG 179
PPGS G+ V P+ P ++ GPA G P ++ + S + GQ KG+ G
Sbjct: 573 VGPPGSGGLKGEPGDVGPQGPRGVQGPPGPA-GKPGRRGRAGSDGARGMPGQTGPKGDRG 631
Query: 180 TPAPASLPG 188
A LPG
Sbjct: 632 FDGLAGLPG 640
Score = 30.4 bits (67), Expect = 2.8
Identities = 29/101 (28%), Positives = 36/101 (35%), Gaps = 27/101 (26%)
Query: 114 EPGVR----EPGDPAPPGST----------PTNGDGVAPRPVSMENGLG----------P 149
EPG + + G+ PPG T P+ DG P P + G P
Sbjct: 1163 EPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADG-EPGPRGQQGLFGQKGDEGPRGFP 1221
Query: 150 APGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGS 190
P P G P PP E G+ G+ G P P G S
Sbjct: 1222 GPPGPVGLQGLPGPPG--EKGETGDVGQMGPPGPPGPRGPS 1260
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 43.9 bits (102), Expect = 2e-04
Identities = 39/123 (31%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 88 QAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGL 147
Q E KG R R KG +PG EPG P P G T +G P PV
Sbjct: 1138 QGEPGVKGPRGERGEKG------ESGQPG--EPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1189
Query: 148 G-PAPGSPEKQPGS---------PSPPSIP-ETGQGVTKGEGGTPAPASLPGGSKEEEEK 196
G P G P Q G+ P P P TG+ G G PA PG + K
Sbjct: 1190 GPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1249
Query: 197 AKR 199
+
Sbjct: 1250 GAK 1252
Score = 40.0 bits (92), Expect = 0.004
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDG--VAPRPVSMENGLGPAP 151
KG+R + G+ K + G + G P PPG GD + PR + E+G
Sbjct: 469 KGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGPRGLPGESGPRGLL 526
Query: 152 GSPEKQPGSPSPP-------------SIPETGQGVTKGEGGTPAPASLPG 188
G P+ PG P PP S+ G+ G+ GTP LPG
Sbjct: 527 G-PKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPG 575
Score = 38.9 bits (89), Expect = 0.008
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 111 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQ-PGSPSPPSIPET 169
+G E PG PG G G P GP + EK PG P I T
Sbjct: 916 KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP--IGPT 973
Query: 170 GQGVTKGEGGTPAPASLPGGSKEEEEKAK 198
G+ +G G P PA PG + E+ +K +
Sbjct: 974 GRDGVQGPVGLPGPAGPPGVAGEDGDKGE 1002
Score = 38.9 bits (89), Expect = 0.008
Identities = 36/106 (33%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 110 TRGREPGVREPGDPAP---PGST-PTNGDGVAPRPVSMENGLGPAPGSPEKQ-------- 157
+ GR+ G GDP PG T P G A +P +GL PGS +Q
Sbjct: 1242 SEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP--DGLRGLPGSVGQQGRPGATGQ 1299
Query: 158 ---PGSPSPPSIPET-GQGVTKGEGGTPAPASLPGGSKEEEEKAKR 199
PG PP +P G KGE G P L G E+ EK R
Sbjct: 1300 AGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDR 1345
Score = 37.0 bits (84), Expect = 0.030
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 103 KGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPS 162
+G + AK E G EPG P PG T NG P P+ G +PGS +Q G +
Sbjct: 1198 RGQDGAKGDRGEDG--EPGQPGSPGPTGENGP---PGPLGKRGPAG-SPGSEGRQGGKGA 1251
Query: 163 PPSIPETGQGVTKGEGGTPAPASLPG 188
G G G PA PG
Sbjct: 1252 KGDPGAIGAPGKTGPVGPAGPAGKPG 1277
Score = 36.6 bits (83), Expect = 0.039
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 102 VKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSM-----ENGLGPAPGSPEK 156
V+G++ + G + + G+P PPG T G P P E G PG P
Sbjct: 540 VRGMDGPQ--GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP-G 596
Query: 157 QPGSPSPPSIP-ETGQGVTKGEGGTPAP 183
PGS PP P + G TKG G P
Sbjct: 597 MPGSDGPPGHPGKEGPPGTKGNQGPSGP 624
Score = 36.6 bits (83), Expect = 0.039
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 102 VKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP---------VSMENGLGP-AP 151
++G AK PG+ G PPG GD P P + + GP P
Sbjct: 1314 LRGDAGAKGEKGHPGLI--GLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1371
Query: 152 GSPEKQPGSPSPPSIP-ETGQGVTKGEGGTPAPASLPG 188
G P PG P TG G KGE G P PG
Sbjct: 1372 GGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1409
Score = 35.8 bits (81), Expect = 0.067
Identities = 27/82 (32%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 121 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQPGSPSPPSIP----ETGQ 171
GDP PPG+ +G R E GL G P E G P P P G
Sbjct: 881 GDPGPPGAPGKDGP-AGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGS 939
Query: 172 GVTKGEGGTPAPASLPGGSKEE 193
G G G P P PG + E+
Sbjct: 940 GGPIGPPGRPGPQGPPGAAGEK 961
Score = 33.9 bits (76), Expect = 0.25
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 111 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGP-APGSPEKQPGSPSPPSIP-- 167
+G V G P PPG G A P G+G P + +PG P I
Sbjct: 1081 KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGE 1140
Query: 168 -----ETGQGVTKGEGGTPAPASLPG 188
G+ KGE G P PG
Sbjct: 1141 PGVKGPRGERGEKGESGQPGEPGPPG 1166
Score = 32.0 bits (71), Expect = 0.97
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 18/109 (16%)
Query: 95 GNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNG-----DGVAPRPVSMENGLGP 149
G + AR + G + G R G P G+T +G G P E GL P
Sbjct: 737 GEKGARGLSGKSGPRGERGPTGPR--GQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-P 793
Query: 150 APGSPEKQPGSPSPPSIP----------ETGQGVTKGEGGTPAPASLPG 188
P P PG PP P + G+ +G+ G P P + G
Sbjct: 794 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVG 842
Score = 30.4 bits (67), Expect = 2.8
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 114 EPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPS-IPETGQG 172
E GV PG+ P G PT DGV PV + P P P G + + GQ
Sbjct: 960 EKGV--PGEKGPIG--PTGRDGVQG-PVGL-----PGPAGPPGVAGEDGDKGEVGDPGQK 1009
Query: 173 VTKGEGGTPAPASLPG 188
TKG G P PG
Sbjct: 1010 GTKGNKGEHGPPGPPG 1025
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 43.9 bits (102), Expect = 2e-04
Identities = 39/123 (31%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 88 QAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGL 147
Q E KG R R KG +PG EPG P P G T +G P PV
Sbjct: 1117 QGEPGVKGPRGERGEKG------ESGQPG--EPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1168
Query: 148 G-PAPGSPEKQPGS---------PSPPSIP-ETGQGVTKGEGGTPAPASLPGGSKEEEEK 196
G P G P Q G+ P P P TG+ G G PA PG + K
Sbjct: 1169 GPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1228
Query: 197 AKR 199
+
Sbjct: 1229 GAK 1231
Score = 40.0 bits (92), Expect = 0.004
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDG--VAPRPVSMENGLGPAP 151
KG+R + G+ K + G + G P PPG GD + PR + E+G
Sbjct: 448 KGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGPRGLPGESGPRGLL 505
Query: 152 GSPEKQPGSPSPP-------------SIPETGQGVTKGEGGTPAPASLPG 188
G P+ PG P PP S+ G+ G+ GTP LPG
Sbjct: 506 G-PKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPG 554
Score = 38.9 bits (89), Expect = 0.008
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 111 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQ-PGSPSPPSIPET 169
+G E PG PG G G P GP + EK PG P I T
Sbjct: 895 KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP--IGPT 952
Query: 170 GQGVTKGEGGTPAPASLPGGSKEEEEKAK 198
G+ +G G P PA PG + E+ +K +
Sbjct: 953 GRDGVQGPVGLPGPAGPPGVAGEDGDKGE 981
Score = 38.9 bits (89), Expect = 0.008
Identities = 36/106 (33%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 110 TRGREPGVREPGDPAP---PGST-PTNGDGVAPRPVSMENGLGPAPGSPEKQ-------- 157
+ GR+ G GDP PG T P G A +P +GL PGS +Q
Sbjct: 1221 SEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP--DGLRGLPGSVGQQGRPGATGQ 1278
Query: 158 ---PGSPSPPSIPET-GQGVTKGEGGTPAPASLPGGSKEEEEKAKR 199
PG PP +P G KGE G P L G E+ EK R
Sbjct: 1279 AGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDR 1324
Score = 37.0 bits (84), Expect = 0.030
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 103 KGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPS 162
+G + AK E G EPG P PG T NG P P+ G +PGS +Q G +
Sbjct: 1177 RGQDGAKGDRGEDG--EPGQPGSPGPTGENGP---PGPLGKRGPAG-SPGSEGRQGGKGA 1230
Query: 163 PPSIPETGQGVTKGEGGTPAPASLPG 188
G G G PA PG
Sbjct: 1231 KGDPGAIGAPGKTGPVGPAGPAGKPG 1256
Score = 36.6 bits (83), Expect = 0.039
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 102 VKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSM-----ENGLGPAPGSPEK 156
V+G++ + G + + G+P PPG T G P P E G PG P
Sbjct: 519 VRGMDGPQ--GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP-G 575
Query: 157 QPGSPSPPSIP-ETGQGVTKGEGGTPAP 183
PGS PP P + G TKG G P
Sbjct: 576 MPGSDGPPGHPGKEGPPGTKGNQGPSGP 603
Score = 36.6 bits (83), Expect = 0.039
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 102 VKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP---------VSMENGLGP-AP 151
++G AK PG+ G PPG GD P P + + GP P
Sbjct: 1293 LRGDAGAKGEKGHPGLI--GLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1350
Query: 152 GSPEKQPGSPSPPSIP-ETGQGVTKGEGGTPAPASLPG 188
G P PG P TG G KGE G P PG
Sbjct: 1351 GGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1388
Score = 35.8 bits (81), Expect = 0.067
Identities = 27/82 (32%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 121 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQPGSPSPPSIP----ETGQ 171
GDP PPG+ +G R E GL G P E G P P P G
Sbjct: 860 GDPGPPGAPGKDGP-AGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGS 918
Query: 172 GVTKGEGGTPAPASLPGGSKEE 193
G G G P P PG + E+
Sbjct: 919 GGPIGPPGRPGPQGPPGAAGEK 940
Score = 33.9 bits (76), Expect = 0.25
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 111 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGP-APGSPEKQPGSPSPPSIP-- 167
+G V G P PPG G A P G+G P + +PG P I
Sbjct: 1060 KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGE 1119
Query: 168 -----ETGQGVTKGEGGTPAPASLPG 188
G+ KGE G P PG
Sbjct: 1120 PGVKGPRGERGEKGESGQPGEPGPPG 1145
Score = 32.0 bits (71), Expect = 0.97
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 18/109 (16%)
Query: 95 GNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNG-----DGVAPRPVSMENGLGP 149
G + AR + G + G R G P G+T +G G P E GL P
Sbjct: 716 GEKGARGLSGKSGPRGERGPTGPR--GQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-P 772
Query: 150 APGSPEKQPGSPSPPSIP----------ETGQGVTKGEGGTPAPASLPG 188
P P PG PP P + G+ +G+ G P P + G
Sbjct: 773 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVG 821
Score = 30.4 bits (67), Expect = 2.8
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 114 EPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPS-IPETGQG 172
E GV PG+ P G PT DGV PV + P P P G + + GQ
Sbjct: 939 EKGV--PGEKGPIG--PTGRDGVQG-PVGL-----PGPAGPPGVAGEDGDKGEVGDPGQK 988
Query: 173 VTKGEGGTPAPASLPG 188
TKG G P PG
Sbjct: 989 GTKGNKGEHGPPGPPG 1004
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 43.9 bits (102), Expect = 2e-04
Identities = 39/123 (31%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 88 QAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGL 147
Q E KG R R KG +PG EPG P P G T +G P PV
Sbjct: 1224 QGEPGVKGPRGERGEKG------ESGQPG--EPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1275
Query: 148 G-PAPGSPEKQPGS---------PSPPSIP-ETGQGVTKGEGGTPAPASLPGGSKEEEEK 196
G P G P Q G+ P P P TG+ G G PA PG + K
Sbjct: 1276 GPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1335
Query: 197 AKR 199
+
Sbjct: 1336 GAK 1338
Score = 40.0 bits (92), Expect = 0.004
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 94 KGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDG--VAPRPVSMENGLGPAP 151
KG+R + G+ K + G + G P PPG GD + PR + E+G
Sbjct: 555 KGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGPRGLPGESGPRGLL 612
Query: 152 GSPEKQPGSPSPP-------------SIPETGQGVTKGEGGTPAPASLPG 188
G P+ PG P PP S+ G+ G+ GTP LPG
Sbjct: 613 G-PKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPG 661
Score = 38.9 bits (89), Expect = 0.008
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 111 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQ-PGSPSPPSIPET 169
+G E PG PG G G P GP + EK PG P I T
Sbjct: 1002 KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP--IGPT 1059
Query: 170 GQGVTKGEGGTPAPASLPGGSKEEEEKAK 198
G+ +G G P PA PG + E+ +K +
Sbjct: 1060 GRDGVQGPVGLPGPAGPPGVAGEDGDKGE 1088
Score = 38.9 bits (89), Expect = 0.008
Identities = 36/106 (33%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 110 TRGREPGVREPGDPAP---PGST-PTNGDGVAPRPVSMENGLGPAPGSPEKQ-------- 157
+ GR+ G GDP PG T P G A +P +GL PGS +Q
Sbjct: 1328 SEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP--DGLRGLPGSVGQQGRPGATGQ 1385
Query: 158 ---PGSPSPPSIPET-GQGVTKGEGGTPAPASLPGGSKEEEEKAKR 199
PG PP +P G KGE G P L G E+ EK R
Sbjct: 1386 AGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDR 1431
Score = 37.0 bits (84), Expect = 0.030
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 103 KGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPS 162
+G + AK E G EPG P PG T NG P P+ G +PGS +Q G +
Sbjct: 1284 RGQDGAKGDRGEDG--EPGQPGSPGPTGENGP---PGPLGKRGPAG-SPGSEGRQGGKGA 1337
Query: 163 PPSIPETGQGVTKGEGGTPAPASLPG 188
G G G PA PG
Sbjct: 1338 KGDPGAIGAPGKTGPVGPAGPAGKPG 1363
Score = 36.6 bits (83), Expect = 0.039
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 102 VKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPVSM-----ENGLGPAPGSPEK 156
V+G++ + G + + G+P PPG T G P P E G PG P
Sbjct: 626 VRGMDGPQ--GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP-G 682
Query: 157 QPGSPSPPSIP-ETGQGVTKGEGGTPAP 183
PGS PP P + G TKG G P
Sbjct: 683 MPGSDGPPGHPGKEGPPGTKGNQGPSGP 710
Score = 36.6 bits (83), Expect = 0.039
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 102 VKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRP---------VSMENGLGP-AP 151
++G AK PG+ G PPG GD P P + + GP P
Sbjct: 1400 LRGDAGAKGEKGHPGLI--GLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1457
Query: 152 GSPEKQPGSPSPPSIP-ETGQGVTKGEGGTPAPASLPG 188
G P PG P TG G KGE G P PG
Sbjct: 1458 GGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1495
Score = 35.8 bits (81), Expect = 0.067
Identities = 27/82 (32%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 121 GDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSP-----EKQPGSPSPPSIP----ETGQ 171
GDP PPG+ +G R E GL G P E G P P P G
Sbjct: 967 GDPGPPGAPGKDGP-AGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGS 1025
Query: 172 GVTKGEGGTPAPASLPGGSKEE 193
G G G P P PG + E+
Sbjct: 1026 GGPIGPPGRPGPQGPPGAAGEK 1047
Score = 33.9 bits (76), Expect = 0.25
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 111 RGREPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGP-APGSPEKQPGSPSPPSIP-- 167
+G V G P PPG G A P G+G P + +PG P I
Sbjct: 1167 KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGE 1226
Query: 168 -----ETGQGVTKGEGGTPAPASLPG 188
G+ KGE G P PG
Sbjct: 1227 PGVKGPRGERGEKGESGQPGEPGPPG 1252
Score = 32.0 bits (71), Expect = 0.97
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 18/109 (16%)
Query: 95 GNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNG-----DGVAPRPVSMENGLGP 149
G + AR + G + G R G P G+T +G G P E GL P
Sbjct: 823 GEKGARGLSGKSGPRGERGPTGPR--GQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-P 879
Query: 150 APGSPEKQPGSPSPPSIP----------ETGQGVTKGEGGTPAPASLPG 188
P P PG PP P + G+ +G+ G P P + G
Sbjct: 880 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVG 928
Score = 30.4 bits (67), Expect = 2.8
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 114 EPGVREPGDPAPPGSTPTNGDGVAPRPVSMENGLGPAPGSPEKQPGSPSPPS-IPETGQG 172
E GV PG+ P G PT DGV PV + P P P G + + GQ
Sbjct: 1046 EKGV--PGEKGPIG--PTGRDGVQG-PVGL-----PGPAGPPGVAGEDGDKGEVGDPGQK 1095
Query: 173 VTKGEGGTPAPASLPG 188
TKG G P PG
Sbjct: 1096 GTKGNKGEHGPPGPPG 1111
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,309,410
Number of Sequences: 37866
Number of extensions: 1465394
Number of successful extensions: 15363
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 981
Number of HSP's that attempted gapping in prelim test: 9394
Number of HSP's gapped (non-prelim): 5399
length of query: 386
length of database: 18,247,518
effective HSP length: 104
effective length of query: 282
effective length of database: 14,309,454
effective search space: 4035266028
effective search space used: 4035266028
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.