Guide to the Human Genome
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Name: ZMAT3 Sequence: fasta or formatted (289aa) NCBI GI: 11968019
Description:

p53 target zinc finger protein isoform 1

Referenced in:

p53 Pathway

Other entries for this name:
alt prot [288aa] p53 target zinc finger protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         25           2
 C cysteine            3.5         10           1
 D aspartate           1.4          4           1
 E glutamate           7.3         21           3
 F phenylalanine       2.8          8           1
 G glycine             6.2         18           2
 H histidine           2.4          7           1
 I isoleucine          1.0          3           1
 K lysine              5.9         17           2
 L leucine             7.6         22           2
 M methionine          3.8         11           2
 N asparagine          6.2         18           2
 P proline             9.3         27           3
 Q glutamine           7.3         21           2
 R arginine            6.2         18           2
 S serine              8.7         25           2
 T threonine           2.8          8           1
 V valine              5.2         15           2
 W tryptophan          0.0          0           0
 Y tyrosine            3.8         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   p53 target zinc finger protein isoform 1 
ZMAT3                 0.990   p53 target zinc finger protein isoform 2 
ZMAT4                 0.082   zinc finger, matrin type 4 isoform a 
ZMAT4                 0.077   zinc finger, matrin type 4 isoform b 
ZNF346                0.072   zinc finger protein 346 
ZNF385B               0.065   zinc finger protein 385B isoform 3 
ZNF385B               0.065   zinc finger protein 385B isoform 2 
ZNF385B               0.065   zinc finger protein 385B isoform 1 
ZMAT1                 0.061   zinc finger, matrin type 1 isoform 1 
ZNF385C               0.059   PREDICTED: zinc finger protein 385C 
ZNF385C               0.059   PREDICTED: zinc finger protein 385C 
ZNF385C               0.059   PREDICTED: zinc finger protein 385C 
ZNF385A               0.052   zinc finger protein 385A isoform a 
ZNF385A               0.052   zinc finger protein 385A isoform c 
ZNF385A               0.047   zinc finger protein 385A isoform b 
ZNF385D               0.042   zinc finger protein 385D 
ZNF462                0.030   zinc finger protein 462 
ZFHX4                 0.026   zinc finger homeodomain 4 
ZFR2                  0.024   zinc finger RNA binding protein 2 isoform 1 
ZFHX2                 0.021   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.021   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.021   PREDICTED: zinc finger homeobox 2 
CIZ1                  0.021   CDKN1A interacting zinc finger protein 1 isoform 4 ...
CIZ1                  0.021   CDKN1A interacting zinc finger protein 1 isoform 3 ...
CIZ1                  0.021   CDKN1A interacting zinc finger protein 1 isoform 1 ...
CIZ1                  0.021   CDKN1A interacting zinc finger protein 1 isoform 2 ...
CIZ1                  0.021   CDKN1A interacting zinc finger protein 1 isoform 1 [...
ZNF318                0.021   zinc finger protein 318 
ZNF628                0.019   zinc finger protein 628 
ZNF830                0.019   coiled-coil domain containing 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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