Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 195546926
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|195546926 LIM domain binding 2 isoform b [Homo sapiens]
(331 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|195546926 LIM domain binding 2 isoform b [Homo sapiens] 690 0.0
gi|4504971 LIM domain binding 2 isoform a [Homo sapiens] 621 e-178
gi|164663816 LIM domain binding 1 isoform 1 [Homo sapiens] 460 e-130
gi|4504969 LIM domain binding 1 isoform 3 [Homo sapiens] 460 e-130
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 38 0.011
gi|8923271 coiled-coil domain containing 49 [Homo sapiens] 35 0.093
gi|153792764 hypothetical protein LOC57624 [Homo sapiens] 33 0.35
gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens] 33 0.35
gi|134948605 ankyrin repeat domain 12 isoform 2 [Homo sapiens] 33 0.46
gi|134948558 ankyrin repeat domain 12 isoform 1 [Homo sapiens] 33 0.46
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 33 0.46
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 32 0.60
gi|30089916 phosphofurin acidic cluster sorting protein 1 [Homo ... 32 0.60
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 31 1.7
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 31 1.7
gi|17998698 GATA binding protein 5 [Homo sapiens] 31 1.7
gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens] 30 2.3
gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens] 30 2.3
gi|163937854 ataxin 7-like 1 isoform 1 [Homo sapiens] 30 2.3
gi|211971080 ataxin 7-like 1 isoform 3 [Homo sapiens] 30 2.3
gi|120587019 zinc finger protein 318 [Homo sapiens] 30 2.3
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 30 2.3
gi|37595553 ring finger protein 111 [Homo sapiens] 30 3.0
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 30 3.0
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 30 3.0
gi|122937492 SET domain containing 5 [Homo sapiens] 30 3.0
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 30 3.9
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 30 3.9
gi|148612831 kinesin family member 18A [Homo sapiens] 30 3.9
gi|149944715 protein phosphatase 1H (PP2C domain containing) [Ho... 30 3.9
>gi|195546926 LIM domain binding 2 isoform b [Homo sapiens]
Length = 331
Score = 690 bits (1780), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE 60
MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
Sbjct: 1 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE 60
Query: 61 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC 120
DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
Sbjct: 61 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC 120
Query: 121 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD 180
DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
Sbjct: 121 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD 180
Query: 181 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ 240
PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
Sbjct: 181 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ 240
Query: 241 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLG 300
RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLG
Sbjct: 241 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLG 300
Query: 301 AIPNCSLNPGRDGDLCHSTAVTPSGQFKEKH 331
AIPNCSLNPGRDGDLCHSTAVTPSGQFKEKH
Sbjct: 301 AIPNCSLNPGRDGDLCHSTAVTPSGQFKEKH 331
>gi|4504971 LIM domain binding 2 isoform a [Homo sapiens]
Length = 373
Score = 621 bits (1601), Expect = e-178
Identities = 301/314 (95%), Positives = 304/314 (96%)
Query: 1 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE 60
MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
Sbjct: 1 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE 60
Query: 61 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC 120
DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
Sbjct: 61 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC 120
Query: 121 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD 180
DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
Sbjct: 121 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD 180
Query: 181 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ 240
PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
Sbjct: 181 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ 240
Query: 241 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLG 300
RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVP +
Sbjct: 241 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM 300
Query: 301 AIPNCSLNPGRDGD 314
+ +L G GD
Sbjct: 301 VVGEPTLMGGEFGD 314
>gi|164663816 LIM domain binding 1 isoform 1 [Homo sapiens]
Length = 411
Score = 460 bits (1183), Expect = e-130
Identities = 219/299 (73%), Positives = 255/299 (85%), Gaps = 1/299 (0%)
Query: 16 PFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGP 75
P RHTPY Q +YRI+E+NKRLQ+ TE+ DNLWWDAF TEFFEDDA LT++FCLEDGP
Sbjct: 55 PGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGP 114
Query: 76 KRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFT 135
KRYTIGRTLIPRYF ++FEGG T+LYY+LKH KE++H++ +++DCDQ +MVTQHGKPMFT
Sbjct: 115 KRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFT 174
Query: 136 KVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMG 195
+VC EGRL LEF FDD+MRIKTWHF+IRQ+REL+PRSILAMHAQDPQ+LDQLSKNITR G
Sbjct: 175 QVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCG 234
Query: 196 LTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTT 255
L+N TLNYLRLCVILEPMQELMSRHKTY+LSPRDCLKTCLFQKWQRMVAPPAEPTRQ +
Sbjct: 235 LSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPS 294
Query: 256 KRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLGAIPNCSLNPGRDGD 314
KRRKRK S ST SS G N N++ SKKK+ A+ +LSSQVP + + +L G GD
Sbjct: 295 KRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGD 352
>gi|4504969 LIM domain binding 1 isoform 3 [Homo sapiens]
Length = 375
Score = 460 bits (1183), Expect = e-130
Identities = 219/299 (73%), Positives = 255/299 (85%), Gaps = 1/299 (0%)
Query: 16 PFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGP 75
P RHTPY Q +YRI+E+NKRLQ+ TE+ DNLWWDAF TEFFEDDA LT++FCLEDGP
Sbjct: 19 PGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGP 78
Query: 76 KRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFT 135
KRYTIGRTLIPRYF ++FEGG T+LYY+LKH KE++H++ +++DCDQ +MVTQHGKPMFT
Sbjct: 79 KRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFT 138
Query: 136 KVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMG 195
+VC EGRL LEF FDD+MRIKTWHF+IRQ+REL+PRSILAMHAQDPQ+LDQLSKNITR G
Sbjct: 139 QVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCG 198
Query: 196 LTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTT 255
L+N TLNYLRLCVILEPMQELMSRHKTY+LSPRDCLKTCLFQKWQRMVAPPAEPTRQ +
Sbjct: 199 LSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPS 258
Query: 256 KRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLGAIPNCSLNPGRDGD 314
KRRKRK S ST SS G N N++ SKKK+ A+ +LSSQVP + + +L G GD
Sbjct: 259 KRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGD 316
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 38.1 bits (87), Expect = 0.011
Identities = 18/59 (30%), Positives = 37/59 (62%)
Query: 252 QPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLGAIPNCSLNPG 310
+PT +RKR++S+SS+S+SS+ ++++S+ S +++++ S SS + PG
Sbjct: 2597 EPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPG 2655
Score = 32.3 bits (72), Expect = 0.60
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 245 PPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSS 294
P A QP +RR +S+SS+S+SS+ ++++S+ S +++++ SS
Sbjct: 2518 PSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567
Score = 31.2 bits (69), Expect = 1.3
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 251 RQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSS 294
R P KRK +SS+S+SS+ ++++S+ S +++++ S SS
Sbjct: 2594 RPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2637
>gi|8923271 coiled-coil domain containing 49 [Homo sapiens]
Length = 425
Score = 35.0 bits (79), Expect = 0.093
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 256 KRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLG-AIPNCSLNPGRDGD 314
K+ K+ SS+S+ S+ + +S G +K A + + S+VPG G + N N G G
Sbjct: 184 KKHKKHKHRSSSSDRSSSEDEHSAGRSQKKMANSSPVLSKVPGYGLQVRNSDRNQGLQGP 243
Query: 315 LCHSTAVTPSGQFKEKH 331
L TA G + H
Sbjct: 244 L---TAEQKRGHGMKNH 257
>gi|153792764 hypothetical protein LOC57624 [Homo sapiens]
Length = 653
Score = 33.1 bits (74), Expect = 0.35
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 245 PPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVP 297
PP +P R P+TK + SST+ S +G T + K + S ++P
Sbjct: 139 PPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIP 191
>gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens]
Length = 669
Score = 33.1 bits (74), Expect = 0.35
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 245 PPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVP 297
PP +P R P+TK + SST+ S +G T + K + S ++P
Sbjct: 139 PPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIP 191
>gi|134948605 ankyrin repeat domain 12 isoform 2 [Homo sapiens]
Length = 2039
Score = 32.7 bits (73), Expect = 0.46
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 214 QELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPT-----------TKRRKRKN 262
+E + + + L R+CL+ + K + P ++ T TK ++ K+
Sbjct: 1076 KEKIKQKEKERLRNRNCLELKIKDKEKTKHTPTESKNKELTRSKSSEVTDAYTKEKQPKD 1135
Query: 263 STSSTSNSSAGNNANSTGSKKKTTAANLSLS----SQVPGLGAIPNCSLNPGRDGDLCHS 318
+ S+ S S N + G + +L+ S ++ PGL + ++ D CH+
Sbjct: 1136 AVSNRSQSVDTKNVMTLGKSSFVSDNSLNRSPRSENEKPGLSSRSVSMISVASSEDSCHT 1195
Query: 319 TAVTP 323
T TP
Sbjct: 1196 TVTTP 1200
>gi|134948558 ankyrin repeat domain 12 isoform 1 [Homo sapiens]
Length = 2062
Score = 32.7 bits (73), Expect = 0.46
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 214 QELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPT-----------TKRRKRKN 262
+E + + + L R+CL+ + K + P ++ T TK ++ K+
Sbjct: 1099 KEKIKQKEKERLRNRNCLELKIKDKEKTKHTPTESKNKELTRSKSSEVTDAYTKEKQPKD 1158
Query: 263 STSSTSNSSAGNNANSTGSKKKTTAANLSLS----SQVPGLGAIPNCSLNPGRDGDLCHS 318
+ S+ S S N + G + +L+ S ++ PGL + ++ D CH+
Sbjct: 1159 AVSNRSQSVDTKNVMTLGKSSFVSDNSLNRSPRSENEKPGLSSRSVSMISVASSEDSCHT 1218
Query: 319 TAVTP 323
T TP
Sbjct: 1219 TVTTP 1223
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 32.7 bits (73), Expect = 0.46
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 244 APPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKT 285
AP AE + +RR R +S+SS+S+SS+ ++++S+ S +
Sbjct: 172 APGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 213
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 32.3 bits (72), Expect = 0.60
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 237 QKWQRMVAPPAEPTRQPTTKRRKRKNSTS---STSNSSAGNNANSTGSKKKTTAANLSLS 293
Q QR+ + + PTR P+ + ++S+S S+S+S++ ++++S+ S + A S
Sbjct: 253 QSPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSSSTSSDSSDSSSSSSDDSPARSVQS 312
Query: 294 SQVP 297
+ VP
Sbjct: 313 AAVP 316
>gi|30089916 phosphofurin acidic cluster sorting protein 1 [Homo
sapiens]
Length = 963
Score = 32.3 bits (72), Expect = 0.60
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 240 QRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGL 299
Q+ PP +PT K + +S+SSTS ++A ++++ST + A+ S PG
Sbjct: 36 QQQQQPPQQPT---PPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPGP 92
Query: 300 GAIP 303
G P
Sbjct: 93 GRTP 96
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 30.8 bits (68), Expect = 1.7
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 202 NYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKR 257
+Y +C + M + + ++S +D L+ C Q W V P EP+ QP R
Sbjct: 3945 SYSAICSTAQRMYQSLEHELQKHVSRQDTLQQC--QAWLSAVQPDLEPSPQPPLSR 3998
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 30.8 bits (68), Expect = 1.7
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 202 NYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKR 257
+Y +C + M + + ++S +D L+ C Q W V P EP+ QP R
Sbjct: 4016 SYSAICSTAQRMYQSLEHELQKHVSRQDTLQQC--QAWLSAVQPDLEPSPQPPLSR 4069
>gi|17998698 GATA binding protein 5 [Homo sapiens]
Length = 397
Score = 30.8 bits (68), Expect = 1.7
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 230 CLKTCLFQKWQRMVAPPAEPTRQPTTKRRKRK------NSTSSTSNSSAGNNA-NSTGSK 282
C L+ K + P A T++RK K S+ ST N+SA +A ST S
Sbjct: 264 CNACGLYMKLHGVPRPLAMKKESIQTRKRKPKTIAKARGSSGSTRNASASPSAVASTDSS 323
Query: 283 KKTTAANLSLSSQV-PGLGAIPNCS 306
T+ A SL+S V PG P S
Sbjct: 324 AATSKAKPSLASPVCPGPSMAPQAS 348
>gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens]
Length = 561
Score = 30.4 bits (67), Expect = 2.3
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 245 PPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLGA 301
P P T++ + T+ST + G+ A+ T S + TTA NL VPG+GA
Sbjct: 319 PLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGT-SGQSTTAPNL-----VPGVGA 369
>gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens]
Length = 589
Score = 30.4 bits (67), Expect = 2.3
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 245 PPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLGA 301
P P T++ + T+ST + G+ A+ T S + TTA NL VPG+GA
Sbjct: 319 PLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGT-SGQSTTAPNL-----VPGVGA 369
>gi|163937854 ataxin 7-like 1 isoform 1 [Homo sapiens]
Length = 861
Score = 30.4 bits (67), Expect = 2.3
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 253 PTTKRRKRKNSTSSTSNSSAGNNANS-----TGSKKKTTAANLSLSSQVPGLGAIP---N 304
P+ K+RK ++STSS+S+SS+ + S +G KK L+ SS + A P +
Sbjct: 640 PSNKKRKPQSSTSSSSSSSSSSLQTSLSSPLSGPHKKNCV--LNASSALNSYQAAPPYNS 697
Query: 305 CSLNPGRDGDLCHSTAVTPSGQ 326
S++ +G S + PSG+
Sbjct: 698 LSVHNSNNGVSPLSAKLEPSGR 719
>gi|211971080 ataxin 7-like 1 isoform 3 [Homo sapiens]
Length = 738
Score = 30.4 bits (67), Expect = 2.3
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 253 PTTKRRKRKNSTSSTSNSSAGNNANS-----TGSKKKTTAANLSLSSQVPGLGAIP---N 304
P+ K+RK ++STSS+S+SS+ + S +G KK L+ SS + A P +
Sbjct: 516 PSNKKRKPQSSTSSSSSSSSSSLQTSLSSPLSGPHKKNCV--LNASSALNSYQAAPPYNS 573
Query: 305 CSLNPGRDGDLCHSTAVTPSGQ 326
S++ +G S + PSG+
Sbjct: 574 LSVHNSNNGVSPLSAKLEPSGR 595
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 30.4 bits (67), Expect = 2.3
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 235 LFQKWQRMVAPPAEPTRQP-TTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293
+F K Q+ ++ EPT +P ++ K SS SNSS+ + K +T + + S
Sbjct: 984 IFDKSQKSLSDSREPTEKPGKAEKSKSPEKVSSFSNSSSNKESKVNNEKFRTKSPKPAES 1043
Query: 294 SQ 295
Q
Sbjct: 1044 PQ 1045
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 30.4 bits (67), Expect = 2.3
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 240 QRMVAPPAEP-TRQPTTKR---RKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQ 295
+RMVA EP T P +K+ KR + +SS S+S + ++ S+ S +++++ S S
Sbjct: 2102 RRMVAARTEPLTPNPASKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRS 2161
Query: 296 VPGLGAIPNCSLNPGRDGDLCHSTAVTPSGQFKE 329
+ +CS S++ + S +E
Sbjct: 2162 GSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEE 2195
>gi|37595553 ring finger protein 111 [Homo sapiens]
Length = 986
Score = 30.0 bits (66), Expect = 3.0
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 248 EPTRQPTTKRRKRKNSTSST---SNSSAGNNANSTGSKKKTTAANLSLSSQVPGLGAIPN 304
EPT PTT R +TS++ SN S A+ T S T++ ++S L +
Sbjct: 391 EPTVVPTTSARMESQATSASINNSNPSTSEQASDTAS-AVTSSQPSTVSETSATLTSNST 449
Query: 305 CSLNPGRDGDLCHSTAVTPSG 325
+ G D S+AVT +G
Sbjct: 450 TGTSIGDDSRRTTSSAVTETG 470
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 30.0 bits (66), Expect = 3.0
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 249 PTRQPTTKR--RKRKNSTSSTSNSSAGNNANSTGSKKKTTAAN 289
P++ P T+ RKR S SS+ SS+ +N ++GS K +++ +
Sbjct: 820 PSKDPKTEHGSRKRTISQSSSLKSSSNSNKETSGSSKNSSSTS 862
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 30.0 bits (66), Expect = 3.0
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 241 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKK 284
R + PP R + RR+R++S S + +SS+ +++ S KK
Sbjct: 330 RRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKK 373
>gi|122937492 SET domain containing 5 [Homo sapiens]
Length = 1442
Score = 30.0 bits (66), Expect = 3.0
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 14/93 (15%)
Query: 244 APPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLGA-- 301
AP P R+ + RK + N SAG +S SK K+ A S+ V GA
Sbjct: 1056 APQNPPQRKKVSLLEYRKRKQEAKEN-SAGGGGDSAQSKSKSAGAGQGSSNSVSDTGAHG 1114
Query: 302 ----------IPNCSLNPGRDGDLCHSTAVTPS 324
P+ +P + H AV+PS
Sbjct: 1115 VQGSSARTPSSPHKKFSPSH-SSMSHLEAVSPS 1146
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 29.6 bits (65), Expect = 3.9
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 211 EPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNS 270
+P Q+ + ++ L+P + + L P A+P R P R R+ + + +
Sbjct: 192 QPEQQAWEQRSSHFLAPEGSVASLL---------PSAKPARAPRPAPRAREEAAAGSRGR 242
Query: 271 SAGNNANSTGSKKKTTAANLSLSSQV 296
+ GS ++ A L L+S V
Sbjct: 243 GGAERPAARGSAQQPPLARLLLASAV 268
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 29.6 bits (65), Expect = 3.9
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 211 EPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNS 270
+P Q+ + ++ L+P + + L P A+P R P R R+ + + +
Sbjct: 192 QPEQQAWEQRSSHFLAPEGSVASLL---------PSAKPARAPRPAPRAREEAAAGSRGR 242
Query: 271 SAGNNANSTGSKKKTTAANLSLSSQV 296
+ GS ++ A L L+S V
Sbjct: 243 GGAERPAARGSAQQPPLARLLLASAV 268
>gi|148612831 kinesin family member 18A [Homo sapiens]
Length = 898
Score = 29.6 bits (65), Expect = 3.9
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 236 FQKWQRMVAPPAEPTRQPTTKRRKRKNS-TSSTSNSSAGNNANSTGSK--KKTTAANLSL 292
F M P P+ T KRK TSSTSNSS + NS +K ++ ++ L
Sbjct: 805 FSTKHSMPVPSMVPSYMAMTTAAKRKRKLTSSTSNSSLTADVNSGFAKRVRQDNSSEKHL 864
Query: 293 SSQVPGLGAIPN-CSLNP 309
P + N C +NP
Sbjct: 865 QENKPTMEHKRNICKINP 882
>gi|149944715 protein phosphatase 1H (PP2C domain containing) [Homo
sapiens]
Length = 514
Score = 29.6 bits (65), Expect = 3.9
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 28 PEYRIYEMNKRLQSRTE----DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTI 80
PE RIY+++K + +D LW D + E + T L C D P RYT+
Sbjct: 414 PEVRIYDLSKYDHGSDDVLILATDGLW-DVLSNEEVAEAITQFLPNCDPDDPHRYTL 469
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,565,177
Number of Sequences: 37866
Number of extensions: 592289
Number of successful extensions: 2561
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 2492
Number of HSP's gapped (non-prelim): 105
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.