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Search of human proteins with 193788634
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|193788634 cysteine/histidine-rich 1 isoform 1 [Homo sapiens]
(362 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|193788634 cysteine/histidine-rich 1 isoform 1 [Homo sapiens] 747 0.0
gi|193788637 cysteine/histidine-rich 1 isoform 2 [Homo sapiens] 167 1e-41
gi|14249268 cysteine/histidine-rich 1 isoform 2 [Homo sapiens] 167 1e-41
gi|55749557 seven in absentia homolog 1 isoform b [Homo sapiens] 43 4e-04
gi|63148618 seven in absentia homolog 1 isoform a [Homo sapiens] 43 4e-04
gi|22027616 TNF receptor-associated factor 3 isoform 1 [Homo sap... 43 4e-04
gi|22027618 TNF receptor-associated factor 3 isoform 1 [Homo sap... 43 4e-04
gi|40288191 XIAP associated factor 1 isoform 1 [Homo sapiens] 43 4e-04
gi|22027620 TNF receptor-associated factor 3 isoform 2 [Homo sap... 40 0.002
gi|87241872 ring finger protein 151 [Homo sapiens] 39 0.009
gi|40288193 XIAP associated factor 1 isoform 2 [Homo sapiens] 34 0.23
gi|56699475 zinc finger protein 202 [Homo sapiens] 33 0.52
gi|113204607 zinc finger protein 157 [Homo sapiens] 33 0.52
gi|7662010 zinc finger protein 516 [Homo sapiens] 33 0.52
gi|122937201 similar to zinc finger protein 709 [Homo sapiens] 32 0.89
gi|219879806 TRAF-type zinc finger domain containing 1 [Homo sap... 32 1.2
gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens] 32 1.2
gi|145309328 papilin [Homo sapiens] 32 1.2
gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens] 31 1.5
gi|37595555 ring finger protein 125 [Homo sapiens] 31 1.5
gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming... 31 2.0
gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming... 31 2.0
gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming ... 30 3.4
gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming ... 30 3.4
gi|5174501 zinc finger protein, subfamily 1A, 1 (Ikaros) [Homo s... 30 4.4
gi|22027612 TNF receptor-associated factor 2 [Homo sapiens] 30 4.4
gi|71061446 zinc finger protein, X-linked [Homo sapiens] 30 4.4
gi|154800449 zinc finger protein 132 [Homo sapiens] 29 5.7
gi|28315873 zinc finger protein 57 [Homo sapiens] 29 5.7
gi|52138523 zinc finger protein 418 [Homo sapiens] 29 5.7
>gi|193788634 cysteine/histidine-rich 1 isoform 1 [Homo sapiens]
Length = 362
Score = 747 bits (1929), Expect = 0.0
Identities = 362/362 (100%), Positives = 362/362 (100%)
Query: 1 MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED 60
MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED
Sbjct: 1 MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED 60
Query: 61 CLAGAWVATVIGLPLLAFDFHWCTNGHLMCAGCFIHLLADARLKEEQATCPNCRCEISKS 120
CLAGAWVATVIGLPLLAFDFHWCTNGHLMCAGCFIHLLADARLKEEQATCPNCRCEISKS
Sbjct: 61 CLAGAWVATVIGLPLLAFDFHWCTNGHLMCAGCFIHLLADARLKEEQATCPNCRCEISKS 120
Query: 121 LCCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFH 180
LCCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFH
Sbjct: 121 LCCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFH 180
Query: 181 ELTVHEAACAHPTKTGSELMEILDGMDQSHRKEMQLYNSIFSLLSFEKIGYTEVQFRPYR 240
ELTVHEAACAHPTKTGSELMEILDGMDQSHRKEMQLYNSIFSLLSFEKIGYTEVQFRPYR
Sbjct: 181 ELTVHEAACAHPTKTGSELMEILDGMDQSHRKEMQLYNSIFSLLSFEKIGYTEVQFRPYR 240
Query: 241 TDDFITRLYYETPRFTVLNQTWVLKARVNDSERNPNLSCKRTLSFQLLLKSKVTAPLECS 300
TDDFITRLYYETPRFTVLNQTWVLKARVNDSERNPNLSCKRTLSFQLLLKSKVTAPLECS
Sbjct: 241 TDDFITRLYYETPRFTVLNQTWVLKARVNDSERNPNLSCKRTLSFQLLLKSKVTAPLECS 300
Query: 301 FLLLKGPYDDVRISPVIYHFVFTNESNETDYVPLPIIDSVECNKLLAAKNINLRLFLFQI 360
FLLLKGPYDDVRISPVIYHFVFTNESNETDYVPLPIIDSVECNKLLAAKNINLRLFLFQI
Sbjct: 301 FLLLKGPYDDVRISPVIYHFVFTNESNETDYVPLPIIDSVECNKLLAAKNINLRLFLFQI 360
Query: 361 QK 362
QK
Sbjct: 361 QK 362
>gi|193788637 cysteine/histidine-rich 1 isoform 2 [Homo sapiens]
Length = 192
Score = 167 bits (424), Expect = 1e-41
Identities = 87/110 (79%), Positives = 93/110 (84%), Gaps = 4/110 (3%)
Query: 1 MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED 60
MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED
Sbjct: 1 MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED 60
Query: 61 CLAGAWVATVIGLPLLAFDFHWC----TNGHLMCAGCFIHLLADARLKEE 106
CLAGAWVATVIGLPLLAFDFHW ++ +L+ G + +A L E
Sbjct: 61 CLAGAWVATVIGLPLLAFDFHWVNGDRSSANLLLGGGMVLAVAGGHLGPE 110
>gi|14249268 cysteine/histidine-rich 1 isoform 2 [Homo sapiens]
Length = 192
Score = 167 bits (424), Expect = 1e-41
Identities = 87/110 (79%), Positives = 93/110 (84%), Gaps = 4/110 (3%)
Query: 1 MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED 60
MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED
Sbjct: 1 MAPKPGAEWSTALSHLVLGVVSLHAAVSTAEASRGAAAGFLLQVLAATTTLAPGLSTHED 60
Query: 61 CLAGAWVATVIGLPLLAFDFHWC----TNGHLMCAGCFIHLLADARLKEE 106
CLAGAWVATVIGLPLLAFDFHW ++ +L+ G + +A L E
Sbjct: 61 CLAGAWVATVIGLPLLAFDFHWVNGDRSSANLLLGGGMVLAVAGGHLGPE 110
>gi|55749557 seven in absentia homolog 1 isoform b [Homo sapiens]
Length = 313
Score = 43.1 bits (100), Expect = 4e-04
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 18/107 (16%)
Query: 83 CTNGHLMCAGCFIHLLADARLKEEQATCPNCRCEISKSLCCRNLAVEKAVSELPSECGF- 141
C +GHL+C+ C + + CP CR + RNLA+EK + + C +
Sbjct: 86 CQSGHLVCSNC----------RPKLTCCPTCRGPLGS---IRNLAMEKVANSVLFPCKYA 132
Query: 142 ---CLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFHELTVH 185
C P + H+ E C+ R C C W G + H
Sbjct: 133 SSGCEITLPHTEKADHE-ELCEFRPYSCPCPGASCKWQGSLDAVMPH 178
>gi|63148618 seven in absentia homolog 1 isoform a [Homo sapiens]
Length = 282
Score = 43.1 bits (100), Expect = 4e-04
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 18/107 (16%)
Query: 83 CTNGHLMCAGCFIHLLADARLKEEQATCPNCRCEISKSLCCRNLAVEKAVSELPSECGF- 141
C +GHL+C+ C + + CP CR + RNLA+EK + + C +
Sbjct: 55 CQSGHLVCSNC----------RPKLTCCPTCRGPLGS---IRNLAMEKVANSVLFPCKYA 101
Query: 142 ---CLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFHELTVH 185
C P + H+ E C+ R C C W G + H
Sbjct: 102 SSGCEITLPHTEKADHE-ELCEFRPYSCPCPGASCKWQGSLDAVMPH 147
>gi|22027616 TNF receptor-associated factor 3 isoform 1 [Homo
sapiens]
Length = 568
Score = 43.1 bits (100), Expect = 4e-04
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 30/131 (22%)
Query: 88 LMCAGCFIHLLADARLKEEQATCPNCRCEISKSLCCRNLAVEKAVSELPSECGFCLRQFP 147
LM +HL D +E P+C+ ++ + + VEKA + C C Q P
Sbjct: 128 LMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDH--VEKACKYREATCSHCKSQVP 185
Query: 148 RSLLERHQK----------------------------EECQDRVTQCKYKRIGCPWHGPF 179
L++H+ EC + + C +KR GC + G
Sbjct: 186 MIALQKHEDTDCPCVVVSCPHKCSVQTLLRSELSAHLSECVNAPSTCSFKRYGCVFQGTN 245
Query: 180 HELTVHEAACA 190
++ HEA+ A
Sbjct: 246 QQIKAHEASSA 256
>gi|22027618 TNF receptor-associated factor 3 isoform 1 [Homo
sapiens]
Length = 568
Score = 43.1 bits (100), Expect = 4e-04
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 30/131 (22%)
Query: 88 LMCAGCFIHLLADARLKEEQATCPNCRCEISKSLCCRNLAVEKAVSELPSECGFCLRQFP 147
LM +HL D +E P+C+ ++ + + VEKA + C C Q P
Sbjct: 128 LMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDH--VEKACKYREATCSHCKSQVP 185
Query: 148 RSLLERHQK----------------------------EECQDRVTQCKYKRIGCPWHGPF 179
L++H+ EC + + C +KR GC + G
Sbjct: 186 MIALQKHEDTDCPCVVVSCPHKCSVQTLLRSELSAHLSECVNAPSTCSFKRYGCVFQGTN 245
Query: 180 HELTVHEAACA 190
++ HEA+ A
Sbjct: 246 QQIKAHEASSA 256
>gi|40288191 XIAP associated factor 1 isoform 1 [Homo sapiens]
Length = 301
Score = 43.1 bits (100), Expect = 4e-04
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 79 DFHWCTN--GHLMCAGCFIHLLADARLKEEQATCPNCRCEISKSLCCRNLAVEKAVSELP 136
DF C N H++ A +H +A CP C + K + +E
Sbjct: 4 DFSVCRNCKRHVVSANFTLH---EAYCLRFLVLCPECEEPVPKETMEEHCKLEHQ----Q 56
Query: 137 SECGFCLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFHELTVHEAACAHPTK 194
C C + +S LE H+ ECQ+R +CK+ C +L +HE+ C T+
Sbjct: 57 VGCTMCQQSMQKSSLEFHKANECQERPVECKF----CKLDMQLSKLELHESYCGSRTE 110
>gi|22027620 TNF receptor-associated factor 3 isoform 2 [Homo
sapiens]
Length = 543
Score = 40.4 bits (93), Expect = 0.002
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 5/129 (3%)
Query: 88 LMCAGCFIHLLADARLKEEQATCPNCRCEISKSLCCRNLAVEKAVSELPSECGFCLRQFP 147
LM +HL D +E P+C+ ++ + + VEKA + C C Q P
Sbjct: 128 LMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDH--VEKACKYREATCSHCKSQVP 185
Query: 148 RSLLERHQKEECQDRVTQCKYKRIGCPWHGPFHELTVHEAACAHPTKTGSELMEILDGMD 207
L++H+ +C V C +K C ++ AH + + + +L
Sbjct: 186 MIALQKHEDTDCPCVVVSCPHK---CSVQTLLRSEGTNQQIKAHEASSAVQHVNLLKEWS 242
Query: 208 QSHRKEMQL 216
S K++ L
Sbjct: 243 NSLEKKVSL 251
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 38.5 bits (88), Expect = 0.009
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 13/107 (12%)
Query: 87 HLMCAGCFIHLLADARLKEEQATCPNCRCEISKSLCCRNLAVEKAVSELPSEC----GFC 142
H+ C C + LA Q TCP CR E+ + + K + L +C C
Sbjct: 37 HIFCKKCILRWLA------RQKTCPCCRKEVKRKKVVHMNKLRKTIGRLEVKCKNADAGC 90
Query: 143 LRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFHELTVHEAAC 189
+ P + + HQ + C +T C + GC P L H C
Sbjct: 91 IVTCPLAHRKGHQ-DSCPFELTACPNE--GCTSQVPRGTLAEHRQHC 134
>gi|40288193 XIAP associated factor 1 isoform 2 [Homo sapiens]
Length = 282
Score = 33.9 bits (76), Expect = 0.23
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 27/100 (27%)
Query: 108 ATCPNCRCEI-------SKSLCCRNLAVEKAVSELPSECGFCLRQFPRSLLERH------ 154
+ C NC+ + ++ C R L + C C P+ +E H
Sbjct: 6 SVCRNCKRHVVSANFTLHEAYCLRFLVL----------CPECEEPVPKETMEEHCKLEHQ 55
Query: 155 QKEECQDRVTQCKYKRIGCPWHGPFHELTVHEAACAHPTK 194
Q ECQ+R +CK+ C +L +HE+ C T+
Sbjct: 56 QANECQERPVECKF----CKLDMQLSKLELHESYCGSRTE 91
>gi|56699475 zinc finger protein 202 [Homo sapiens]
Length = 648
Score = 32.7 bits (73), Expect = 0.52
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 90 CAGCFIHLLADARLKEEQATCPNCRC-EISKSLCCRNLAVEKA---VSELPSECGFCLRQ 145
C CF H A A+ A+ CRC E KS R+ V E P C C +
Sbjct: 570 CGRCFTHSAAFAKHLRGHASVRPCRCNECGKSFSRRDHLVRHQRTHTGEKPFTCPTCGKS 629
Query: 146 FPRSL-LERHQK 156
F R L RHQ+
Sbjct: 630 FSRGYHLIRHQR 641
>gi|113204607 zinc finger protein 157 [Homo sapiens]
Length = 506
Score = 32.7 bits (73), Expect = 0.52
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 90 CAGCFIHLLADARLKEEQATCPNCRC-EISKSLCCRNLAVEKA---VSELPSECGFCLRQ 145
C F R K N C E K+ C ++ VE E P ECG C +
Sbjct: 139 CRKAFHEKTGFVRRKRTPRGDKNFECHECGKAYCRKSNLVEHLRIHTGERPYECGECAKT 198
Query: 146 F-PRSLLERHQKEECQDRVTQC 166
F RS L HQK +R +C
Sbjct: 199 FSARSYLIAHQKTHTGERPFEC 220
>gi|7662010 zinc finger protein 516 [Homo sapiens]
Length = 1163
Score = 32.7 bits (73), Expect = 0.52
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 106 EQATCPNCRCEISKSLCCRNLA---VEKAVSELPSECGFC-LRQFPRSLLERHQKEECQD 161
++ATC C C KS ++ + K E P +C +C R + L+ H +
Sbjct: 29 DKATCHTC-CICGKSFPFQSSLSQHMRKHTGEKPYKCPYCDHRASQKGNLKIHIRSHRTG 87
Query: 162 RVTQCKYKRIGCPWHGPFHELTVHEA--ACAHPTKTGSELMEILDGMDQS 209
+ Q G P E+ E ACA PTK+ S +L+G Q+
Sbjct: 88 TLIQGHEPEAG---EAPLGEMRASEGLDACASPTKSASACNRLLNGASQA 134
>gi|122937201 similar to zinc finger protein 709 [Homo sapiens]
Length = 578
Score = 32.0 bits (71), Expect = 0.89
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 134 ELPSECGFCLRQF-PRSLLERHQKEECQDRVTQCKY--KRIGCPWHGPFHELT 183
E P +C C + F S L+RH+K ++ +CK K CP +HE T
Sbjct: 271 ERPHKCNICGKAFFSPSSLKRHEKSHTGEKRYKCKQCDKAFNCPSSFQYHERT 323
>gi|219879806 TRAF-type zinc finger domain containing 1 [Homo
sapiens]
Length = 582
Score = 31.6 bits (70), Expect = 1.2
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 110 CPNCRCEISKSLCCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKYK 169
CP C+ KS ++ A C C ++ + LL++H++ EC R+ C++
Sbjct: 39 CPTCKEPFPKS----DMETHMAAEHCQVTCK-CNKKLEKRLLKKHEETECPLRLAVCQH- 92
Query: 170 RIGCPWHGPFHELTVHEAACAHPTK 194
C +L HE C T+
Sbjct: 93 ---CDLELSILKLKEHEDYCGARTE 114
>gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens]
Length = 582
Score = 31.6 bits (70), Expect = 1.2
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 110 CPNCRCEISKSLCCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKYK 169
CP C+ KS ++ A C C ++ + LL++H++ EC R+ C++
Sbjct: 39 CPTCKEPFPKS----DMETHMAAEHCQVTCK-CNKKLEKRLLKKHEETECPLRLAVCQH- 92
Query: 170 RIGCPWHGPFHELTVHEAACAHPTK 194
C +L HE C T+
Sbjct: 93 ---CDLELSILKLKEHEDYCGARTE 114
>gi|145309328 papilin [Homo sapiens]
Length = 1251
Score = 31.6 bits (70), Expect = 1.2
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 101 ARLKEEQATCPNCRCEISKSLCCRNLAVEKAVSELPSECGFCLRQF--------PRS--- 149
A L + CP C+ S+ CC + +V+E P G C + + PRS
Sbjct: 617 ASLGPQWQGCPGAPCQQSRYGCCPD---RVSVAEGPHHAG-CTKSYGGDSTGGMPRSRAV 672
Query: 150 ---LLERHQKEECQDRVTQCKYKRIGCPWH------GPFHELTVHEAACAHPTK 194
+ HQ + Q+ ++C+ + GC + GP E V + + A+P +
Sbjct: 673 ASTVHNTHQPQAQQNEPSECRGSQFGCCYDNVATAAGPLGEGCVGQPSHAYPVR 726
>gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]
Length = 1066
Score = 31.2 bits (69), Expect = 1.5
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 86 GHLMCAGCFIHLLADARLKEEQATCP-NCRCEISKSLCCRNLAVEKAVSELPSECGF--- 141
GH+ CAGC + + ++ +CP CR +S L +++ + +L +C +
Sbjct: 34 GHVFCAGCVLPWVV------QEGSCPARCRGRLSAKELNHVLPLKRLILKLDIKCAYATR 87
Query: 142 -CLRQFPRSLLERHQKEECQDRVTQCKYKRIG 172
C R L H E C +C++ G
Sbjct: 88 GCGRVVKLQQLPEH-LERCDFAPARCRHAGCG 118
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 31.2 bits (69), Expect = 1.5
Identities = 40/154 (25%), Positives = 56/154 (36%), Gaps = 32/154 (20%)
Query: 73 LPLLAFDFHWCTN----------GHLMCAGCFIHLLADARLKEEQATCPNCRCEI-SKSL 121
LP+ +FD C GH+ C C LK + TCP CR + S+ +
Sbjct: 30 LPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIA-----TSLKNNKWTCPYCRAYLPSEGV 84
Query: 122 CCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFHE 181
++A K + C C S + H + CQ + + +GP E
Sbjct: 85 PATDVA--KRMKSEYKNCAECDTLVCLSEMRAHIR-TCQKYIDK----------YGPLQE 131
Query: 182 LTVHEAACAHPTKTGSELME--ILDGMDQSHRKE 213
L A C P EL E +LD HR E
Sbjct: 132 LEETAARCVCPF-CQRELYEDSLLDHCITHHRSE 164
>gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 2 [Homo sapiens]
Length = 428
Score = 30.8 bits (68), Expect = 2.0
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 86 GHLMCAGCFIHLLADARLKEEQATCPNCRCEI 117
GHL+C+ C A + TCP CRCEI
Sbjct: 321 GHLLCSCCLA-----AWQHSDSQTCPFCRCEI 347
>gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 1 [Homo sapiens]
Length = 474
Score = 30.8 bits (68), Expect = 2.0
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 86 GHLMCAGCFIHLLADARLKEEQATCPNCRCEI 117
GHL+C+ C A + TCP CRCEI
Sbjct: 367 GHLLCSCCLA-----AWQHSDSQTCPFCRCEI 393
>gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming
sequence b [Homo sapiens]
Length = 982
Score = 30.0 bits (66), Expect = 3.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 86 GHLMCAGCFIHLLADARLKEEQATCPNCRCEI 117
GHLMC C A + + CP CRCEI
Sbjct: 389 GHLMCTSCLT-----AWQESDGQGCPFCRCEI 415
>gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming
sequence [Homo sapiens]
Length = 906
Score = 30.0 bits (66), Expect = 3.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 86 GHLMCAGCFIHLLADARLKEEQATCPNCRCEI 117
GHLMC C + + E CP CRCEI
Sbjct: 397 GHLMCTSCLT-----SWQESEGQGCPFCRCEI 423
>gi|5174501 zinc finger protein, subfamily 1A, 1 (Ikaros) [Homo
sapiens]
Length = 519
Score = 29.6 bits (65), Expect = 4.4
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 136 PSECGFCLRQF-PRSLLERHQKEECQDRVTQCKYKRIGCP--WHGPFHELTVHEAACAHP 192
P +CG+C R + RS LE H KE C + + + +G P + E T H
Sbjct: 200 PHKCGYCGRSYKQRSSLEEH-KERCHNYL-----ESMGLPGTLYPVIKEETNHSEMAEDL 253
Query: 193 TKTGSELMEILD 204
K GSE +LD
Sbjct: 254 CKIGSERSLVLD 265
>gi|22027612 TNF receptor-associated factor 2 [Homo sapiens]
Length = 501
Score = 29.6 bits (65), Expect = 4.4
Identities = 18/66 (27%), Positives = 26/66 (39%)
Query: 108 ATCPNCRCEISKSLCCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCK 167
A CP+ C +L E + +EC C ERH + EC +R C+
Sbjct: 105 AVCPSDGCTWKGTLKEYESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCR 164
Query: 168 YKRIGC 173
+ R C
Sbjct: 165 HCRAPC 170
>gi|71061446 zinc finger protein, X-linked [Homo sapiens]
Length = 805
Score = 29.6 bits (65), Expect = 4.4
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 96 HLLADARLKEEQATCPNCRCEISKSLCCRNLAVEKAVSELPSECGFCLRQF-PRSLLERH 154
H+ A K Q C +C +I+ + +LP C C + F +S L++H
Sbjct: 680 HVAAHKGKKMHQ--CRHCDFKIADPFVLSRHILSVHTKDLPFRCKRCRKGFRQQSELKKH 737
Query: 155 QKEECQDRVTQCKY 168
K +V QC+Y
Sbjct: 738 MKTHSGRKVYQCEY 751
>gi|154800449 zinc finger protein 132 [Homo sapiens]
Length = 706
Score = 29.3 bits (64), Expect = 5.7
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 105 EEQATCPNC-RCEISKSLCCRNLAVEKAVSELPSECGFCLRQFP-RSLLERHQKEECQDR 162
E C C R S S R+ V E P EC C + F RS L RHQK ++R
Sbjct: 624 ERPYECSECGRAFSSNSHLVRHQRVH--TQERPYECIQCGKAFSERSTLVRHQKVHTRER 681
Query: 163 VTQC 166
+C
Sbjct: 682 TYEC 685
>gi|28315873 zinc finger protein 57 [Homo sapiens]
Length = 555
Score = 29.3 bits (64), Expect = 5.7
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 104 KEEQATCPNCRCEISKSLCCRNLAVEKAVSELPSECGFCLRQFP-RSLLERHQKEECQDR 162
+E+ C +C + S + + E P EC C + F S L H + ++
Sbjct: 444 QEQLHKCEHCGKAFTSSRAFQG-HLRMHTGEKPYECKQCGKTFTWSSTLHNHVRMHTGEK 502
Query: 163 VTQCKYKRIGCPWHGPF-HELTVHEAACAHPTKTGSE 198
+CK + WH F + L +H +H ++ S+
Sbjct: 503 PHKCKQCGMSFKWHSSFRNHLRMHTGQKSHECQSYSK 539
>gi|52138523 zinc finger protein 418 [Homo sapiens]
Length = 676
Score = 29.3 bits (64), Expect = 5.7
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 134 ELPSECGFCLRQFPR-SLLERHQKEECQDRVTQCK 167
E P ECG C + F + S L RHQK +R +C+
Sbjct: 535 ERPYECGECGKSFHQSSSLLRHQKTHTAERPYECR 569
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,215,699
Number of Sequences: 37866
Number of extensions: 611141
Number of successful extensions: 1778
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1740
Number of HSP's gapped (non-prelim): 70
length of query: 362
length of database: 18,247,518
effective HSP length: 104
effective length of query: 258
effective length of database: 14,309,454
effective search space: 3691839132
effective search space used: 3691839132
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.