Guide to the Human Genome
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Name: CBLC Sequence: fasta or formatted (474aa) NCBI GI: 195927027
Description:

Cas-Br-M (murine) ecotropic retroviral transforming sequence c isoform 1

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [428aa] Cas-Br-M (murine) ecotropic retroviral transforming sequence c is...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         45           2
 C cysteine            3.8         18           2
 D aspartate           4.0         19           1
 E glutamate           6.1         29           2
 F phenylalanine       3.4         16           1
 G glycine             7.8         37           4
 H histidine           3.0         14           1
 I isoleucine          3.0         14           2
 K lysine              3.4         16           1
 L leucine            12.2         58           2
 M methionine          1.3          6           1
 N asparagine          2.1         10           1
 P proline             8.6         41           2
 Q glutamine           5.9         28           2
 R arginine            7.2         34           2
 S serine              6.5         31           2
 T threonine           3.8         18           2
 V valine              4.0         19           1
 W tryptophan          2.1         10           1
 Y tyrosine            2.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Cas-Br-M (murine) ecotropic retroviral transforming... 
CBLC                  0.857   Cas-Br-M (murine) ecotropic retroviral transforming...
CBL                   0.411   Cas-Br-M (murine) ecotropic retroviral transforming ...
CBLB                  0.400   Cas-Br-M (murine) ecotropic retroviral transforming ...
RNF185                0.031   ring finger protein 185 isoform 1 
RNF185                0.031   ring finger protein 185 isoform 1 
RNF5                  0.023   ring finger protein 5 
PEX10                 0.023   peroxisome biogenesis factor 10 isoform 1 
PEX10                 0.023   peroxisome biogenesis factor 10 isoform 2 
AMFR                  0.022   autocrine motility factor receptor 
RBBP6                 0.022   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.022   retinoblastoma-binding protein 6 isoform 1 
RNF213                0.021   ring finger protein 213 
RNF145                0.021   ring finger protein 145 
TRIM2                 0.020   tripartite motif-containing 2 isoform 2 
TRIM2                 0.020   tripartite motif-containing 2 isoform 1 
CHFR                  0.018   checkpoint with forkhead and ring finger domains is...
CHFR                  0.018   checkpoint with forkhead and ring finger domains is...
CHFR                  0.018   checkpoint with forkhead and ring finger domains is...
CHFR                  0.018   checkpoint with forkhead and ring finger domains is...
CHFR                  0.018   checkpoint with forkhead and ring finger domains is...
RNF167                0.018   ring finger protein 167 
TRIM56                0.018   tripartite motif-containing 56 
RNF168                0.017   ring finger protein 168 
RNF169                0.017   ring finger protein 169 
RNF150                0.017   ring finger protein 150 
BIRC7                 0.016   livin inhibitor of apoptosis isoform beta 
RNF151                0.016   ring finger protein 151 
TRIM3                 0.016   tripartite motif-containing 3 
TRIM3                 0.016   tripartite motif-containing 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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