Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: IKZF1 Sequence: fasta or formatted (519aa) NCBI GI: 5174501
Description:

zinc finger protein, subfamily 1A, 1 (Ikaros)

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         27           2
 C cysteine            3.9         20           1
 D aspartate           5.4         28           1
 E glutamate           8.5         44           2
 F phenylalanine       1.7          9           1
 G glycine             7.7         40           2
 H histidine           5.0         26           1
 I isoleucine          3.1         16           2
 K lysine              5.6         29           1
 L leucine             8.1         42           4
 M methionine          3.7         19           2
 N asparagine          4.8         25           2
 P proline             5.0         26           2
 Q glutamine           3.9         20           2
 R arginine            6.0         31           3
 S serine             11.2         58           2
 T threonine           3.7         19           2
 V valine              4.8         25           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.9         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein, subfamily 1A, 1 (Ikaros) 
IKZF2                 0.481   helios isoform 1 
IKZF3                 0.468   aiolos isoform 1 
IKZF4                 0.447   zinc finger protein, subfamily 1A, 4 
IKZF2                 0.416   helios isoform 2 
IKZF3                 0.407   aiolos isoform 4 
IKZF3                 0.327   aiolos isoform 2 
IKZF3                 0.316   aiolos isoform 3 
IKZF3                 0.263   aiolos isoform 5 
IKZF3                 0.241   aiolos isoform 6 
RBAK                  0.095   RB-associated KRAB repressor 
ZNF248                0.085   zinc finger protein 248 
ZNF677                0.083   zinc finger protein 677 
ZNF192                0.082   zinc finger protein 192 
ZNF841                0.082   zinc finger protein 841 
ZNF509                0.082   zinc finger protein 509 
ZNF274                0.081   zinc finger protein 274 isoform c 
ZNF274                0.081   zinc finger protein 274 isoform a 
ZNF274                0.081   zinc finger protein 274 isoform b 
ZNF713                0.081   zinc finger protein 713 
ZSCAN12               0.080   zinc finger and SCAN domain containing 12 
ZNF66                 0.080   PREDICTED: zinc finger protein 66 
ZNF66                 0.080   PREDICTED: zinc finger protein 66 
ZNF66                 0.080   PREDICTED: zinc finger protein 66 
ZNF813                0.080   zinc finger protein 813 
ZNF12                 0.080   zinc finger protein 12 isoform b 
ZNF347                0.080   zinc finger protein 347 
ZNF12                 0.080   zinc finger protein 12 isoform a 
ZNF782                0.079   zinc finger protein 782 
ZNF845                0.079   zinc finger protein 845 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press