Guide to the Human Genome
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Name: ZNF516 Sequence: fasta or formatted (1163aa) NCBI GI: 7662010
Description:

zinc finger protein 516

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2        130           3
 C cysteine            3.2         37           2
 D aspartate           4.0         47           2
 E glutamate           6.7         78           2
 F phenylalanine       2.8         32           2
 G glycine            10.0        116           4
 H histidine           4.1         48           1
 I isoleucine          2.0         23           1
 K lysine              5.9         69           2
 L leucine             6.2         72           3
 M methionine          1.3         15           1
 N asparagine          2.5         29           2
 P proline             8.7        101           3
 Q glutamine           4.3         50           1
 R arginine            7.2         84           2
 S serine              9.2        107           2
 T threonine           4.4         51           2
 V valine              4.2         49           2
 W tryptophan          0.8          9           1
 Y tyrosine            1.4         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 516 
ZNF536                0.137   zinc finger protein 536 
ZNF217                0.086   zinc finger protein 217 
ZNF219                0.073   zinc finger protein 219 
ZNF219                0.073   zinc finger protein 219 
ZNF219                0.073   zinc finger protein 219 
ZNF45                 0.039   zinc finger protein 45 
LOC100287429          0.039   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.039   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.039   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.039   zinc finger protein 84 
ZNF84                 0.039   zinc finger protein 84 
LOC647678             0.038   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC647678             0.038   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.038   PREDICTED: hypothetical protein XP_002343697 
ZNF658                0.037   zinc finger protein 658 
DKFZp686E2433         0.037   hypothetical protein LOC345462 
ZFP112                0.037   zinc finger protein 228 isoform 1 
ZFP112                0.037   zinc finger protein 228 isoform 2 
ZNF16                 0.037   zinc finger protein 16 
ZNF16                 0.037   zinc finger protein 16 
ZNF568                0.037   zinc finger protein 568 
ZNF678                0.037   zinc finger protein 678 
ZNF226                0.037   zinc finger protein 226 isoform a 
ZNF226                0.037   zinc finger protein 226 isoform a 
LOC100288322          0.036   PREDICTED: similar to zinc finger protein 587 [Homo...
LOC100288322          0.036   PREDICTED: hypothetical protein XP_002343703 
ZNF83                 0.036   zinc finger protein 83 isoform b 
ZNF83                 0.036   zinc finger protein 83 isoform b 
ZNF234                0.036   zinc finger protein 234 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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