Guide to the Human Genome
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Name: PAPLN Sequence: fasta or formatted (1251aa) NCBI GI: 145309328
Description:

papilin

Referenced in:

Metalloproteases
Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5        106           2
 C cysteine            5.6         70           2
 D aspartate           5.0         63           2
 E glutamate           5.1         64           2
 F phenylalanine       1.8         22           1
 G glycine            10.6        133           3
 H histidine           3.7         46           2
 I isoleucine          2.2         27           2
 K lysine              1.5         19           1
 L leucine             6.2         77           4
 M methionine          0.6          8           1
 N asparagine          2.1         26           2
 P proline             9.7        121           3
 Q glutamine           6.7         84           2
 R arginine            7.8         97           3
 S serine              9.8        123           3
 T threonine           3.4         43           2
 V valine              5.1         64           2
 W tryptophan          2.3         29           2
 Y tyrosine            2.3         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   papilin 
ADAMTS6               0.126   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS10              0.122   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS18              0.119   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS16              0.113   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS7               0.106   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS17              0.103   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS9               0.097   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS19              0.096   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS12              0.093   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS20              0.091   a disintegrin-like and metalloprotease with thrombo...
ADAMTSL1              0.090   ADAMTS-like 1 isoform 4 precursor 
ADAMTSL3              0.088   ADAMTS-like 3 precursor 
ADAMTSL1              0.088   ADAMTS-like 1 isoform 2 precursor 
ADAMTSL4              0.086   thrombospondin repeat containing 1 isoform 1 
ADAMTSL4              0.078   thrombospondin repeat containing 1 isoform 2 
ADAMTS1               0.078   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS3               0.077   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS15              0.077   a disintegrin-like and metalloprotease (reprolysin t...
THSD4                 0.076   thrombospondin, type I, domain containing 4 
ADAMTS2               0.075   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS14              0.071   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS14              0.071   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS13              0.065   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.065   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.065   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTSL5              0.065   ADAMTS-like 5 
ADAMTS8               0.061   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS5               0.051   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS4               0.051   ADAM metallopeptidase with thrombospondin type 1 mo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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