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Search of human proteins with 190014615
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190014615 hypothetical protein LOC157983 [Homo sapiens]
(295 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190014615 hypothetical protein LOC157983 [Homo sapiens] 604 e-173
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 50 3e-06
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 50 3e-06
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 50 3e-06
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 50 3e-06
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 48 9e-06
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 48 9e-06
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 48 1e-05
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 48 1e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 47 3e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 47 3e-05
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 45 6e-05
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 45 6e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 45 8e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 45 1e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 45 1e-04
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 44 2e-04
gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 44 2e-04
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 44 2e-04
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 44 2e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 44 2e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 44 2e-04
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 43 4e-04
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 42 5e-04
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 42 5e-04
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 42 5e-04
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 42 5e-04
>gi|190014615 hypothetical protein LOC157983 [Homo sapiens]
Length = 295
Score = 604 bits (1558), Expect = e-173
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MRHSVARPTRLPRRLSPFWDPATCKNLEGGAGEVVRGRDPRRLRTSRSTEILGEDLAGPS 60
MRHSVARPTRLPRRLSPFWDPATCKNLEGGAGEVVRGRDPRRLRTSRSTEILGEDLAGPS
Sbjct: 1 MRHSVARPTRLPRRLSPFWDPATCKNLEGGAGEVVRGRDPRRLRTSRSTEILGEDLAGPS 60
Query: 61 AGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGG 120
AGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGG
Sbjct: 61 AGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGG 120
Query: 121 VLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSA 180
VLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSA
Sbjct: 121 VLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSA 180
Query: 181 LETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALP 240
LETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALP
Sbjct: 181 LETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALP 240
Query: 241 GAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVGNHPRDS 295
GAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVGNHPRDS
Sbjct: 241 GAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVGNHPRDS 295
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 49.7 bits (117), Expect = 3e-06
Identities = 78/274 (28%), Positives = 98/274 (35%), Gaps = 52/274 (18%)
Query: 22 ATCKNLEGGAGEVVRGRDPRRLRTSRSTE-ILGEDLAG-PSAGAAARPAAPPPQPREPGA 79
A + G + R R R R + S E G +++G P + RPAA PP PR
Sbjct: 34 AAFRTCSSGTCRLTRSRKSRLERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSP 93
Query: 80 PG-------LRRAPPRTRMDSSG--LGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLERER 130
PG PPR SG L P + P G S + RA+
Sbjct: 94 PGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGP---RPGCS--SARASPAPAAPQAAART 148
Query: 131 AALCARQSGHGPPAVRWLLGSRGAESGGL-ARRRVAAEHAQPSANLVCRSALETSAFPPS 189
A A G GP GSRG S + AR A P CR+A SA P
Sbjct: 149 APGRAASGGSGP-------GSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFR 201
Query: 190 KPKSPRGRVRARSSDGRLRHPAWRAGSGGRGG----RGPSAELAS--------------- 230
+P P +++R G GSGG G PSA+ +S
Sbjct: 202 RPGLP---LKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRV 258
Query: 231 -RYWGRRRA-----LPGAADLRPKGARADDRRPL 258
GRRR+ PG L P R R+PL
Sbjct: 259 RGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPL 292
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 49.7 bits (117), Expect = 3e-06
Identities = 78/274 (28%), Positives = 98/274 (35%), Gaps = 52/274 (18%)
Query: 22 ATCKNLEGGAGEVVRGRDPRRLRTSRSTE-ILGEDLAG-PSAGAAARPAAPPPQPREPGA 79
A + G + R R R R + S E G +++G P + RPAA PP PR
Sbjct: 34 AAFRTCSSGTCRLTRSRKSRLERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSP 93
Query: 80 PG-------LRRAPPRTRMDSSG--LGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLERER 130
PG PPR SG L P + P G S + RA+
Sbjct: 94 PGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGP---RPGCS--SARASPAPAAPQAAART 148
Query: 131 AALCARQSGHGPPAVRWLLGSRGAESGGL-ARRRVAAEHAQPSANLVCRSALETSAFPPS 189
A A G GP GSRG S + AR A P CR+A SA P
Sbjct: 149 APGRAASGGSGP-------GSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFR 201
Query: 190 KPKSPRGRVRARSSDGRLRHPAWRAGSGGRGG----RGPSAELAS--------------- 230
+P P +++R G GSGG G PSA+ +S
Sbjct: 202 RPGLP---LKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRV 258
Query: 231 -RYWGRRRA-----LPGAADLRPKGARADDRRPL 258
GRRR+ PG L P R R+PL
Sbjct: 259 RGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPL 292
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 49.7 bits (117), Expect = 3e-06
Identities = 78/274 (28%), Positives = 98/274 (35%), Gaps = 52/274 (18%)
Query: 22 ATCKNLEGGAGEVVRGRDPRRLRTSRSTE-ILGEDLAG-PSAGAAARPAAPPPQPREPGA 79
A + G + R R R R + S E G +++G P + RPAA PP PR
Sbjct: 34 AAFRTCSSGTCRLTRSRKSRLERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSP 93
Query: 80 PG-------LRRAPPRTRMDSSG--LGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLERER 130
PG PPR SG L P + P G S + RA+
Sbjct: 94 PGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGP---RPGCS--SARASPAPAAPQAAART 148
Query: 131 AALCARQSGHGPPAVRWLLGSRGAESGGL-ARRRVAAEHAQPSANLVCRSALETSAFPPS 189
A A G GP GSRG S + AR A P CR+A SA P
Sbjct: 149 APGRAASGGSGP-------GSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFR 201
Query: 190 KPKSPRGRVRARSSDGRLRHPAWRAGSGGRGG----RGPSAELAS--------------- 230
+P P +++R G GSGG G PSA+ +S
Sbjct: 202 RPGLP---LKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRV 258
Query: 231 -RYWGRRRA-----LPGAADLRPKGARADDRRPL 258
GRRR+ PG L P R R+PL
Sbjct: 259 RGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPL 292
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 49.7 bits (117), Expect = 3e-06
Identities = 83/305 (27%), Positives = 104/305 (34%), Gaps = 47/305 (15%)
Query: 8 PTRLPRRLSPFWDPATCKNLEGGAGEVVRGRDPRRLRTSRSTEILGEDLAGPSAGAAARP 67
P RR SP +DP E + R R P R + T I + A AAA
Sbjct: 286 PPSYARRDSPTYDPYKRSPSESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAA 345
Query: 68 AAP-------PPQPREPG--APGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAA 118
AA PP P +PG APG + R SS S S+ S R
Sbjct: 346 AAASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRG 405
Query: 119 GGVLPVDLE-RERAALCARQSGHGPPAVRWLLGSRG-AESGGLARRRVAAEHAQPSANLV 176
GG R R+ +R R SRG SGG +R +
Sbjct: 406 GGYYRSGRHARSRSRSWSRSRSRSRRYSR--SRSRGRRHSGGGSR----------DGHRY 453
Query: 177 CRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYW--- 233
RS + PR R R+RS H R GGRG R S+ + W
Sbjct: 454 SRSPARRGGY------GPRRRSRSRS------HSGDRYRRGGRGLRHHSSSRSRSSWSLS 501
Query: 234 -GRRRAL-------PGAADLRPKG-ARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHK 284
R R+L P + R + +R+ P A KL P A+ G K EP
Sbjct: 502 PSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRPAASPAVGEKLKKTEPAA 561
Query: 285 AGEVG 289
E G
Sbjct: 562 GKETG 566
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 48.1 bits (113), Expect = 9e-06
Identities = 70/252 (27%), Positives = 98/252 (38%), Gaps = 45/252 (17%)
Query: 43 LRTSRSTEILGEDLAGPSAGAAARPAAPPPQPREPGAPGLRRAP--PRTRM--DSSGLGP 98
L S T+ LG L P RP+ PPP + + G+ AP P TR G+ P
Sbjct: 258 LLVSTGTKGLGRSLVTP------RPSPPPPLTPQAESGGVDAAPRAPETRQVRKVDGVNP 311
Query: 99 CSEAPLHTSAGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGG 158
+ P + SG R P L L A++S +RW SG
Sbjct: 312 AAAGPRGGATACSGVQSRR-----PQGLALRATLLPAKRSAD----MRW-------NSGS 355
Query: 159 LARRRVAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGG 218
+ + + ++P +L+ L S+ +SP G+ R+S R R GG
Sbjct: 356 CSHFHILRKVSRPDLSLLHGLGLR------SRSESPAGQCVLRASQQR----GVRLEGGG 405
Query: 219 RGGRGPS--AELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEA------A 270
R PS A A+R GR +A R + ARA LR G + P+A A
Sbjct: 406 RQQLVPSQVAWRAARAPGRHQAAV-LRRRRARVARAQQLARLRVGHAVQAPQALQAQLHA 464
Query: 271 RLPGNVGKSGEP 282
RLP +S P
Sbjct: 465 RLPSRRARSSAP 476
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 48.1 bits (113), Expect = 9e-06
Identities = 70/252 (27%), Positives = 98/252 (38%), Gaps = 45/252 (17%)
Query: 43 LRTSRSTEILGEDLAGPSAGAAARPAAPPPQPREPGAPGLRRAP--PRTRM--DSSGLGP 98
L S T+ LG L P RP+ PPP + + G+ AP P TR G+ P
Sbjct: 258 LLVSTGTKGLGRSLVTP------RPSPPPPLTPQAESGGVDAAPRAPETRQVRKVDGVNP 311
Query: 99 CSEAPLHTSAGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGG 158
+ P + SG R P L L A++S +RW SG
Sbjct: 312 AAAGPRGGATACSGVQSRR-----PQGLALRATLLPAKRSAD----MRW-------NSGS 355
Query: 159 LARRRVAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGG 218
+ + + ++P +L+ L S+ +SP G+ R+S R R GG
Sbjct: 356 CSHFHILRKVSRPDLSLLHGLGLR------SRSESPAGQCVLRASQQR----GVRLEGGG 405
Query: 219 RGGRGPS--AELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEA------A 270
R PS A A+R GR +A R + ARA LR G + P+A A
Sbjct: 406 RQQLVPSQVAWRAARAPGRHQAAV-LRRRRARVARAQQLARLRVGHAVQAPQALQAQLHA 464
Query: 271 RLPGNVGKSGEP 282
RLP +S P
Sbjct: 465 RLPSRRARSSAP 476
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 47.8 bits (112), Expect = 1e-05
Identities = 81/287 (28%), Positives = 100/287 (34%), Gaps = 42/287 (14%)
Query: 12 PRRLSPFW-DPATCKNLEGGAGEVVRGRDPRRLRTSRSTEILGEDLAGPSAGAAARP--- 67
PRRL+ PA N A + GR +++ SAGA P
Sbjct: 7 PRRLAGLQRTPAAYAN---EAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYR 63
Query: 68 -AAPPPQPREPGAPGLRRAPPRTRMDSSGLGP---CSEAPLHTSAGLSGRNLRAAGGVLP 123
+APPP P P PG P R+ +GL P S PL A SGR A
Sbjct: 64 VSAPPPAPPPPPPPG---GPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAG----- 115
Query: 124 VDLERERAALCARQSG-----HGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCR 178
L AAL A Q G PPA+R S G A A+ +P + R
Sbjct: 116 -RLRCSAAALSAAQRGGPARAQVPPALRTF-------SPGPASPPRASPGGRPGSEARGR 167
Query: 179 SALETSAFPPSKPKSPRGRVRARSSDGRL---RHPAWRAGSGGRGGRGPSAELASRYWGR 235
S E + P P D + + PA G G + S +
Sbjct: 168 SGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQ 227
Query: 236 RRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEP 282
R PGA+ R G A RP RA R+ R PG G G P
Sbjct: 228 HRWPPGASPSRSLG-EAGGERPARALRR------PRAPGRAGGGGPP 267
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 47.8 bits (112), Expect = 1e-05
Identities = 81/287 (28%), Positives = 100/287 (34%), Gaps = 42/287 (14%)
Query: 12 PRRLSPFW-DPATCKNLEGGAGEVVRGRDPRRLRTSRSTEILGEDLAGPSAGAAARP--- 67
PRRL+ PA N A + GR +++ SAGA P
Sbjct: 7 PRRLAGLQRTPAAYAN---EAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYR 63
Query: 68 -AAPPPQPREPGAPGLRRAPPRTRMDSSGLGP---CSEAPLHTSAGLSGRNLRAAGGVLP 123
+APPP P P PG P R+ +GL P S PL A SGR A
Sbjct: 64 VSAPPPAPPPPPPPG---GPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAG----- 115
Query: 124 VDLERERAALCARQSG-----HGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCR 178
L AAL A Q G PPA+R S G A A+ +P + R
Sbjct: 116 -RLRCSAAALSAAQRGGPARAQVPPALRTF-------SPGPASPPRASPGGRPGSEARGR 167
Query: 179 SALETSAFPPSKPKSPRGRVRARSSDGRL---RHPAWRAGSGGRGGRGPSAELASRYWGR 235
S E + P P D + + PA G G + S +
Sbjct: 168 SGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQ 227
Query: 236 RRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEP 282
R PGA+ R G A RP RA R+ R PG G G P
Sbjct: 228 HRWPPGASPSRSLG-EAGGERPARALRR------PRAPGRAGGGGPP 267
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 46.6 bits (109), Expect = 3e-05
Identities = 75/258 (29%), Positives = 88/258 (34%), Gaps = 38/258 (14%)
Query: 50 EILGEDLAGPSAGAAARPAAPPPQPREPGA--PG-LRRAPPRTRMDSSGLGPCSEAPLHT 106
EIL L P AA P + EP PG L PP GP A L
Sbjct: 275 EILESSLLPPLEEAAHGPRGLKGEKGEPAVLEPGMLVEGPP---------GPEGPAGLIG 325
Query: 107 SAGLSGRNLRAAGGVLPVDLERE---RAALCARQSGHGPPAVRWLLGSRGAESGGLARRR 163
G+ G G + ER RA L GPP +L R GG
Sbjct: 326 PPGIQGNP-----GPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPV 380
Query: 164 VAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGG---RG 220
VAA+ AQ A L+ + P P G G+ P + SG +G
Sbjct: 381 VAAQEAQAQA------ILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQG 434
Query: 221 GRGPSAELASRYWGRRRALPGA-------ADLRPKGARADDRRPLRAGRKLHLPE--AAR 271
RGP RR GA D KG R D P G K H + A
Sbjct: 435 PRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQG 494
Query: 272 LPGNVGKSGEPHKAGEVG 289
LPG G+ GE GE+G
Sbjct: 495 LPGPPGEDGERGDDGEIG 512
Score = 35.0 bits (79), Expect = 0.079
Identities = 63/258 (24%), Positives = 80/258 (31%), Gaps = 50/258 (19%)
Query: 54 EDLAGPSAGAAAR----PAAPP--PQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTS 107
+ L GPS P PP P PR P P P LGP E
Sbjct: 1072 QGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGE 1131
Query: 108 AGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAE 167
+G G ++ GV ER + GPP + G G
Sbjct: 1132 SGSPG--IQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDG-------------- 1175
Query: 168 HAQPSANLVCRSALETSAFP----PSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRG 223
P N FP P PRG+ A+ G P G G G
Sbjct: 1176 ---PKGN------PGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENG 1226
Query: 224 PSAELASRYWGRRRALPGAADLR-PKGARADDRRPLRAGRKLHL----------PEAAR- 271
P L R PG+ + KGA+ D G+ + P+ R
Sbjct: 1227 PPGPLGKR---GPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRG 1283
Query: 272 LPGNVGKSGEPHKAGEVG 289
LPG+VG+ G P G+ G
Sbjct: 1284 LPGSVGQQGRPGATGQAG 1301
Score = 33.9 bits (76), Expect = 0.18
Identities = 40/156 (25%), Positives = 56/156 (35%), Gaps = 15/156 (9%)
Query: 141 GPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRA 200
GPP VR + G +G + G L + Q A P K P+G+
Sbjct: 536 GPPGVRGMDGPQGPK-GSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL 594
Query: 201 RS---SDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLR----PKGARAD 253
SDG HP G +G +GPS + R + G +R KG + +
Sbjct: 595 PGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGE 654
Query: 254 DRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVG 289
D P G + G+ G+ G P GE G
Sbjct: 655 DGFPGFKG-------DIGVKGDRGEVGVPGSRGEDG 683
Score = 33.5 bits (75), Expect = 0.23
Identities = 41/163 (25%), Positives = 56/163 (34%), Gaps = 20/163 (12%)
Query: 137 QSGHGPPAVRWLLGSRGA--ESGGLARRRVAAEHAQPSAN-LVCRSALETSAFPPSKPKS 193
Q GPP ++G +GA E+G + R P L + E + P P +
Sbjct: 829 QGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGA 888
Query: 194 PR--GRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLRPKGAR 251
P G R G P G G +G GPS PG A +
Sbjct: 889 PGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGP------------PGPAGSPGERGA 936
Query: 252 ADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVGNHPRD 294
A P+ + P PG G+ G P + G +G RD
Sbjct: 937 AGSGGPIGPPGR---PGPQGPPGAAGEKGVPGEKGPIGPTGRD 976
Score = 29.6 bits (65), Expect = 3.3
Identities = 42/152 (27%), Positives = 50/152 (32%), Gaps = 16/152 (10%)
Query: 141 GPPAVRWLLGSRGA--ESGGLARRRVAAEHAQPSANLVCRSALETSAFP-PSKPKSPRGR 197
GP R G RGA +SG H P + + FP P P P G+
Sbjct: 755 GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-PGPQGPNGFPGPKGPPGPPGK 813
Query: 198 VRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLRPKGARADDRRP 257
DG HP R G +G GP G A + P G R P
Sbjct: 814 ------DGLPGHPGQRGEVGFQGKTGPPGPP-----GVVGPQGAAGETGPMGERGHPGPP 862
Query: 258 LRAGRKLHLPEAARLPGNVGKSGEPHKAGEVG 289
G + LP A G G G P G+ G
Sbjct: 863 GPPGEQ-GLPGTAGKEGTKGDPGPPGAPGKDG 893
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 46.6 bits (109), Expect = 3e-05
Identities = 78/283 (27%), Positives = 98/283 (34%), Gaps = 41/283 (14%)
Query: 28 EGGAGEVVRGRDPRRLRTS---RSTEILGEDLAGPSAGAAARPAAPPPQPREPGA--PG- 81
EGG E + + P R + S + + + P + AA P + EP PG
Sbjct: 229 EGGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQAAHGPRGLKGEKGEPAVLEPGM 288
Query: 82 LRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLERE---RAALCARQS 138
L PP GP A L G+ G G + ER RA L
Sbjct: 289 LVEGPP---------GPEGPAGLIGPPGIQGNP-----GPVGDPGERGPPGRAGLPGSDG 334
Query: 139 GHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRV 198
GPP +L R GG VAA+ AQ A L+ + P P G
Sbjct: 335 APGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQA------ILQQARLALRGPPGPMGYT 388
Query: 199 RARSSDGRLRHPAWRAGSGG---RGGRGPSAELASRYWGRRRALPGA-------ADLRPK 248
G+ P + SG +G RGP RR GA D K
Sbjct: 389 GRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVK 448
Query: 249 GARADDRRPLRAGRKLHLPE--AARLPGNVGKSGEPHKAGEVG 289
G R D P G K H + A LPG G+ GE GE+G
Sbjct: 449 GDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIG 491
Score = 35.0 bits (79), Expect = 0.079
Identities = 63/258 (24%), Positives = 80/258 (31%), Gaps = 50/258 (19%)
Query: 54 EDLAGPSAGAAAR----PAAPP--PQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTS 107
+ L GPS P PP P PR P P P LGP E
Sbjct: 1051 QGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGE 1110
Query: 108 AGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAE 167
+G G ++ GV ER + GPP + G G
Sbjct: 1111 SGSPG--IQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDG-------------- 1154
Query: 168 HAQPSANLVCRSALETSAFP----PSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRG 223
P N FP P PRG+ A+ G P G G G
Sbjct: 1155 ---PKGN------PGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENG 1205
Query: 224 PSAELASRYWGRRRALPGAADLR-PKGARADDRRPLRAGRKLHL----------PEAAR- 271
P L R PG+ + KGA+ D G+ + P+ R
Sbjct: 1206 PPGPLGKR---GPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRG 1262
Query: 272 LPGNVGKSGEPHKAGEVG 289
LPG+VG+ G P G+ G
Sbjct: 1263 LPGSVGQQGRPGATGQAG 1280
Score = 33.9 bits (76), Expect = 0.18
Identities = 40/156 (25%), Positives = 56/156 (35%), Gaps = 15/156 (9%)
Query: 141 GPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRA 200
GPP VR + G +G + G L + Q A P K P+G+
Sbjct: 515 GPPGVRGMDGPQGPK-GSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL 573
Query: 201 RS---SDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLR----PKGARAD 253
SDG HP G +G +GPS + R + G +R KG + +
Sbjct: 574 PGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGE 633
Query: 254 DRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVG 289
D P G + G+ G+ G P GE G
Sbjct: 634 DGFPGFKG-------DIGVKGDRGEVGVPGSRGEDG 662
Score = 33.5 bits (75), Expect = 0.23
Identities = 41/163 (25%), Positives = 56/163 (34%), Gaps = 20/163 (12%)
Query: 137 QSGHGPPAVRWLLGSRGA--ESGGLARRRVAAEHAQPSAN-LVCRSALETSAFPPSKPKS 193
Q GPP ++G +GA E+G + R P L + E + P P +
Sbjct: 808 QGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGA 867
Query: 194 PR--GRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLRPKGAR 251
P G R G P G G +G GPS PG A +
Sbjct: 868 PGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGP------------PGPAGSPGERGA 915
Query: 252 ADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVGNHPRD 294
A P+ + P PG G+ G P + G +G RD
Sbjct: 916 AGSGGPIGPPGR---PGPQGPPGAAGEKGVPGEKGPIGPTGRD 955
Score = 29.6 bits (65), Expect = 3.3
Identities = 42/152 (27%), Positives = 50/152 (32%), Gaps = 16/152 (10%)
Query: 141 GPPAVRWLLGSRGA--ESGGLARRRVAAEHAQPSANLVCRSALETSAFP-PSKPKSPRGR 197
GP R G RGA +SG H P + + FP P P P G+
Sbjct: 734 GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-PGPQGPNGFPGPKGPPGPPGK 792
Query: 198 VRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLRPKGARADDRRP 257
DG HP R G +G GP G A + P G R P
Sbjct: 793 ------DGLPGHPGQRGEVGFQGKTGPPGPP-----GVVGPQGAAGETGPMGERGHPGPP 841
Query: 258 LRAGRKLHLPEAARLPGNVGKSGEPHKAGEVG 289
G + LP A G G G P G+ G
Sbjct: 842 GPPGEQ-GLPGTAGKEGTKGDPGPPGAPGKDG 872
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 45.4 bits (106), Expect = 6e-05
Identities = 77/282 (27%), Positives = 101/282 (35%), Gaps = 48/282 (17%)
Query: 30 GAGEVVRGRDPRRLRTSRSTEILGEDLAGPSAGAAARPA-APPPQPR------------- 75
G+G V RG+ ++ RS+ L + + S +A+PA AP P PR
Sbjct: 184 GSGRVPRGQPEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRG 243
Query: 76 ---EPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLERERA- 131
P A G + PP R+ + + + + L R A+ L L RA
Sbjct: 244 GAERPAARGSAQQPPLARLLLASAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSRAP 303
Query: 132 ------ALCARQ-----SGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSA 180
C R+ +GHG P R L SRG E G RRR E C
Sbjct: 304 SLSPFPRRCRRRAERSPAGHGLPLPRSL--SRGGEVVGARRRRGGEERRVRGRRQGCALG 361
Query: 181 LETSAFPPSKPKSPRGRVRARSSDGRLRHP--AWRAGSGGRGGRGPSAELASRYWGRRRA 238
P+ P R AR R P + R G+ G G RG RA
Sbjct: 362 SPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTP---------RA 412
Query: 239 LPGAADLRPKGARADDRRPLR----AGRKLHLP--EAARLPG 274
+ LRP A P R AG +L P EA +PG
Sbjct: 413 RGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAPSAEAEEVPG 454
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 45.4 bits (106), Expect = 6e-05
Identities = 77/282 (27%), Positives = 101/282 (35%), Gaps = 48/282 (17%)
Query: 30 GAGEVVRGRDPRRLRTSRSTEILGEDLAGPSAGAAARPA-APPPQPR------------- 75
G+G V RG+ ++ RS+ L + + S +A+PA AP P PR
Sbjct: 184 GSGRVPRGQPEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRG 243
Query: 76 ---EPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLERERA- 131
P A G + PP R+ + + + + L R A+ L L RA
Sbjct: 244 GAERPAARGSAQQPPLARLLLASAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSRAP 303
Query: 132 ------ALCARQ-----SGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSA 180
C R+ +GHG P R L SRG E G RRR E C
Sbjct: 304 SLSPFPRRCRRRAERSPAGHGLPLPRSL--SRGGEVVGARRRRGGEERRVRGRRQGCALG 361
Query: 181 LETSAFPPSKPKSPRGRVRARSSDGRLRHP--AWRAGSGGRGGRGPSAELASRYWGRRRA 238
P+ P R AR R P + R G+ G G RG RA
Sbjct: 362 SPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTP---------RA 412
Query: 239 LPGAADLRPKGARADDRRPLR----AGRKLHLP--EAARLPG 274
+ LRP A P R AG +L P EA +PG
Sbjct: 413 RGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAPSAEAEEVPG 454
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 45.1 bits (105), Expect = 8e-05
Identities = 51/172 (29%), Positives = 61/172 (35%), Gaps = 18/172 (10%)
Query: 130 RAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSALETSAFPPS 189
RA L GPP +L R GG VAA+ AQ A L+ +
Sbjct: 433 RAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQA------ILQQARLALR 486
Query: 190 KPKSPRGRVRARSSDGRLRHPAWRAGSGG---RGGRGPSAELASRYWGRRRALPGA---- 242
P P G G+ P + SG +G RGP RR GA
Sbjct: 487 GPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGAR 546
Query: 243 ---ADLRPKGARADDRRPLRAGRKLHLPE--AARLPGNVGKSGEPHKAGEVG 289
D KG R D P G K H + A LPG G+ GE GE+G
Sbjct: 547 GMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIG 598
Score = 35.0 bits (79), Expect = 0.079
Identities = 63/258 (24%), Positives = 80/258 (31%), Gaps = 50/258 (19%)
Query: 54 EDLAGPSAGAAAR----PAAPP--PQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTS 107
+ L GPS P PP P PR P P P LGP E
Sbjct: 1158 QGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGE 1217
Query: 108 AGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAE 167
+G G ++ GV ER + GPP + G G
Sbjct: 1218 SGSPG--IQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDG-------------- 1261
Query: 168 HAQPSANLVCRSALETSAFP----PSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRG 223
P N FP P PRG+ A+ G P G G G
Sbjct: 1262 ---PKGN------PGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENG 1312
Query: 224 PSAELASRYWGRRRALPGAADLR-PKGARADDRRPLRAGRKLHL----------PEAAR- 271
P L R PG+ + KGA+ D G+ + P+ R
Sbjct: 1313 PPGPLGKR---GPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRG 1369
Query: 272 LPGNVGKSGEPHKAGEVG 289
LPG+VG+ G P G+ G
Sbjct: 1370 LPGSVGQQGRPGATGQAG 1387
Score = 33.9 bits (76), Expect = 0.18
Identities = 40/156 (25%), Positives = 56/156 (35%), Gaps = 15/156 (9%)
Query: 141 GPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRA 200
GPP VR + G +G + G L + Q A P K P+G+
Sbjct: 622 GPPGVRGMDGPQGPK-GSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL 680
Query: 201 RS---SDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLR----PKGARAD 253
SDG HP G +G +GPS + R + G +R KG + +
Sbjct: 681 PGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGE 740
Query: 254 DRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVG 289
D P G + G+ G+ G P GE G
Sbjct: 741 DGFPGFKG-------DIGVKGDRGEVGVPGSRGEDG 769
Score = 33.5 bits (75), Expect = 0.23
Identities = 41/163 (25%), Positives = 56/163 (34%), Gaps = 20/163 (12%)
Query: 137 QSGHGPPAVRWLLGSRGA--ESGGLARRRVAAEHAQPSAN-LVCRSALETSAFPPSKPKS 193
Q GPP ++G +GA E+G + R P L + E + P P +
Sbjct: 915 QGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGA 974
Query: 194 PR--GRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLRPKGAR 251
P G R G P G G +G GPS PG A +
Sbjct: 975 PGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGP------------PGPAGSPGERGA 1022
Query: 252 ADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVGNHPRD 294
A P+ + P PG G+ G P + G +G RD
Sbjct: 1023 AGSGGPIGPPGR---PGPQGPPGAAGEKGVPGEKGPIGPTGRD 1062
Score = 29.6 bits (65), Expect = 3.3
Identities = 42/152 (27%), Positives = 50/152 (32%), Gaps = 16/152 (10%)
Query: 141 GPPAVRWLLGSRGA--ESGGLARRRVAAEHAQPSANLVCRSALETSAFP-PSKPKSPRGR 197
GP R G RGA +SG H P + + FP P P P G+
Sbjct: 841 GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-PGPQGPNGFPGPKGPPGPPGK 899
Query: 198 VRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLRPKGARADDRRP 257
DG HP R G +G GP G A + P G R P
Sbjct: 900 ------DGLPGHPGQRGEVGFQGKTGPPGPP-----GVVGPQGAAGETGPMGERGHPGPP 948
Query: 258 LRAGRKLHLPEAARLPGNVGKSGEPHKAGEVG 289
G + LP A G G G P G+ G
Sbjct: 949 GPPGEQ-GLPGTAGKEGTKGDPGPPGAPGKDG 979
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 44.7 bits (104), Expect = 1e-04
Identities = 67/251 (26%), Positives = 81/251 (32%), Gaps = 26/251 (10%)
Query: 58 GPSAGAAAR-------PAAPPPQ------PREPGAPGLR--RAPPRTRMDSSGLGPCSEA 102
GP+ A AR PA PP P PGAPG + P R GP E
Sbjct: 336 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP 395
Query: 103 PLHTSAGLSGRNLRAAGGVLPVDLERERAALCARQSG----HGPPAVRWLLGSRGAESGG 158
S G +G + +P A A G GPP + G G + G
Sbjct: 396 GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK-GQ 454
Query: 159 LARRRVAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGG 218
+A + A A P+ + RG G + P R G
Sbjct: 455 TGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGN 514
Query: 219 RGGRGPSAELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGK 278
RG G + R G A PKGA D RP G LP A L G G
Sbjct: 515 RGFPGQDGLAGPKGAPGERGPSGLAG--PKGANGDPGRPGEPG----LPGARGLTGRPGD 568
Query: 279 SGEPHKAGEVG 289
+G K G G
Sbjct: 569 AGPQGKVGPSG 579
Score = 43.5 bits (101), Expect = 2e-04
Identities = 65/239 (27%), Positives = 79/239 (33%), Gaps = 47/239 (19%)
Query: 59 PSAGAAARPAAPPPQPREPGAPGLR-----RAPPRTRMDSSGLGPCSEAPLHTSAGLSGR 113
P A P P Q EPG G + + P GP E + G
Sbjct: 440 PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARG---- 495
Query: 114 NLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAES-GGLARRRVAAEHAQPS 172
GGV P+ GPP R G+RG GLA + A PS
Sbjct: 496 ---EPGGVGPI----------------GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS 536
Query: 173 ANLVCRSALETSAFPPSKPKSPRGR-VRARSSDGRLRHPAWRAGSGGRGGR-GPSAELAS 230
L P +P P R + R D + +G+ G GR GP +
Sbjct: 537 G-LAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGA 595
Query: 231 RYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVG 289
R PG PKGA + P +AG K LPG G G P K GE G
Sbjct: 596 RGQPGVMGFPG-----PKGANGE---PGKAGEK-------GLPGAPGLRGLPGKDGETG 639
Score = 43.1 bits (100), Expect = 3e-04
Identities = 68/250 (27%), Positives = 82/250 (32%), Gaps = 48/250 (19%)
Query: 58 GPSAGAAARPAAP--PPQPREPGAPGLR--------RAPPRTRMDSSGLGPCSEAPLHTS 107
GP AGA+ P P GAPG+ R PP + + LGP +
Sbjct: 402 GP-AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGI 460
Query: 108 AGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAE 167
AG G + Q GP G+RG E GG+ E
Sbjct: 461 AGFKGEQG-----------PKGEPGPAGPQGAPGPAGEEGKRGARG-EPGGVGPIGPPGE 508
Query: 168 HAQPSANLVCRSALETSAFPPSKPKS-PRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSA 226
P FP + P+G R G L P G GR G P
Sbjct: 509 RGAPG----------NRGFPGQDGLAGPKGAPGERGPSG-LAGPKGANGDPGRPGE-PGL 556
Query: 227 ELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAAR-------LPGNVGKS 279
A GR + P GA +D RP G P+ AR PG G +
Sbjct: 557 PGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPG-----PQGARGQPGVMGFPGPKGAN 611
Query: 280 GEPHKAGEVG 289
GEP KAGE G
Sbjct: 612 GEPGKAGEKG 621
Score = 36.6 bits (83), Expect = 0.027
Identities = 64/244 (26%), Positives = 82/244 (33%), Gaps = 25/244 (10%)
Query: 53 GEDLAGPSAGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGL-GPCSEAPLHTSAGLS 111
GE A +G P P P P E G PG + P + GL GP E G
Sbjct: 654 GEQGAPGPSGFQGLPGPPGP-PGEGGKPGDQGVPGEA--GAPGLVGPRGERGFPGERGSP 710
Query: 112 G----RNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAE--SGGLARRRVA 165
G + R G D + + GPP ++ + G RGA +G R
Sbjct: 711 GAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV 770
Query: 166 AEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPS 225
E A + + P P G A G + P +G RG G
Sbjct: 771 GEKGPEGA------PGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER 824
Query: 226 AELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKA 285
E PG AD +P GA+ + AG+K A PG G SG P
Sbjct: 825 GETGPPGPAGFAGPPG-ADGQP-GAKGEQG---EAGQK----GDAGAPGPQGPSGAPGPQ 875
Query: 286 GEVG 289
G G
Sbjct: 876 GPTG 879
Score = 35.0 bits (79), Expect = 0.079
Identities = 67/264 (25%), Positives = 83/264 (31%), Gaps = 54/264 (20%)
Query: 53 GEDLAGPSAGAAARPAAPPP-----QPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTS 107
G D ++G A P A P P E GA G+ P R D GP
Sbjct: 726 GTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIA-GPKGDRGDVGEKGPEGAPGKDGG 784
Query: 108 AGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGA-----ESGGLARR 162
GL+G G P E+ + GPP G+RGA E+G
Sbjct: 785 RGLTG----PIGPPGPAGANGEKGEV-------GPPGPAGSAGARGAPGERGETGPPGPA 833
Query: 163 RVAAE---HAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGR 219
A QP A A + P+ P G + G G R
Sbjct: 834 GFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVT------GPKGAR 887
Query: 220 GGRGPSAELASRYWGRRRALPGA-------------ADLRPKGARADDRRPLRAGRKLHL 266
G +GP R PG+ PKGAR D P RAG
Sbjct: 888 GAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGE---- 943
Query: 267 PEAARLPGNVGKSGEPHKAGEVGN 290
PG G +G P + GE G+
Sbjct: 944 ------PGLQGPAGPPGEKGEPGD 961
Score = 34.3 bits (77), Expect = 0.13
Identities = 60/244 (24%), Positives = 72/244 (29%), Gaps = 22/244 (9%)
Query: 62 GAAARPAAPPPQ-----PREPGAPGLR--------RAPPRTRMDSSGLGPCSEAPLHTSA 108
G AP PQ P EPG PG+ PP D G +A
Sbjct: 210 GPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPP 269
Query: 109 GLSG-RNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRG--AESGGLARRRVA 165
G G R G+ V R L + G P V+ GS G G + R +
Sbjct: 270 GPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP 329
Query: 166 AEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPS 225
E + + P+ P P G G P + +G G RGP
Sbjct: 330 GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGA---PGAKGEAGPTGARGPE 386
Query: 226 AELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKA 285
R PG A G D P G P A PG G G P
Sbjct: 387 GAQGPRGEPGTPGSPGPAG--ASGNPGTDGIPGAKG-SAGAPGIAGAPGFPGPRGPPGPQ 443
Query: 286 GEVG 289
G G
Sbjct: 444 GATG 447
Score = 33.1 bits (74), Expect = 0.30
Identities = 56/233 (24%), Positives = 72/233 (30%), Gaps = 22/233 (9%)
Query: 62 GAAARPAAPPP--QPREPGAPGLR--RAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRA 117
G P P P +P + GAPG R PP GP E S G G R
Sbjct: 990 GERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR- 1048
Query: 118 AGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVC 177
G V +R GPP G G + R A+ +
Sbjct: 1049 -DGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGD---RGEAGAQGPMGPSGPAG 1104
Query: 178 RSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRR 237
++ P P+ +G G H + G G GPS G +
Sbjct: 1105 ARGIQG----PQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPS--------GDQG 1152
Query: 238 ALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVGN 290
A A P+G + G +P PG G+SGE AG GN
Sbjct: 1153 ASGPAGPSGPRGPPGPVGPSGKDGAN-GIPGPIGPPGPRGRSGETGPAGPPGN 1204
Score = 32.7 bits (73), Expect = 0.39
Identities = 64/241 (26%), Positives = 79/241 (32%), Gaps = 48/241 (19%)
Query: 58 GPSAGAAARPAAPPPQPREPGAPGLR--RAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNL 115
GP+ A AR A P + E G PG PP G EA AG G
Sbjct: 810 GPAGSAGARGA--PGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ- 866
Query: 116 RAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAES--GGLARRRVAAEHAQPSA 173
+G P GP V G+RGA+ G A P +
Sbjct: 867 GPSGAPGP----------------QGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGS 910
Query: 174 NLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYW 233
N + PP P P G+ + + G P G +G GP E
Sbjct: 911 N--------GNPGPPGPP-GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGE------ 955
Query: 234 GRRRALPGAADLRPKGARADDRRPLRAGRK--LHLPEAAR---LPGNVGKSGEPHKAGEV 288
+ PG D P GA AG++ + LP PG G SGEP K G
Sbjct: 956 ---KGEPG--DDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAP 1010
Query: 289 G 289
G
Sbjct: 1011 G 1011
Score = 32.0 bits (71), Expect = 0.67
Identities = 32/107 (29%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 188 PSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLR- 246
P P P G + G P SG G RGP PG A R
Sbjct: 208 PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERG 267
Query: 247 ---PKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVGN 290
P+GAR P G K H L G G++G P GE G+
Sbjct: 268 PPGPQGARGFPGTPGLPGVKGHRGYPG-LDGAKGEAGAPGVKGESGS 313
Score = 32.0 bits (71), Expect = 0.67
Identities = 38/152 (25%), Positives = 54/152 (35%), Gaps = 56/152 (36%)
Query: 67 PAAPPPQPREPGAPGLRRAPPRTRMDSS---GLGPCSEAPLHTSAGLSGRNLRAAGGVLP 123
PA PP P PG PG PP +D S GLGP
Sbjct: 1198 PAGPPGNPGPPGPPG----PPGPGIDMSAFAGLGP------------------------- 1228
Query: 124 VDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSALET 183
RE+ GP ++++ + A GGL + + S N + +E+
Sbjct: 1229 ----REK----------GPDPLQYMRADQAA--GGLRQHDAEVDATLKSLN----NQIES 1268
Query: 184 SAFPPSKPKSPRGRVRARSSDGRLRHPAWRAG 215
P K+P R D +L HP W++G
Sbjct: 1269 IRSPEGSRKNPARTCR----DLKLCHPEWKSG 1296
Score = 31.2 bits (69), Expect = 1.1
Identities = 67/261 (25%), Positives = 82/261 (31%), Gaps = 51/261 (19%)
Query: 54 EDLAGPSAGAAARPAAPPPQPR-------EPGAPGLRRAPPRTRMDSSGL----GPCSEA 102
+D+ GP + A PR E GAPG PR R G GP
Sbjct: 113 KDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPG-----PRGRDGEPGTPGNPGPPGPP 167
Query: 103 PLHTSAGLSGR-NLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLAR 161
GL G + AGG D + A L Q GP R G GA G
Sbjct: 168 GPPGPPGLGGNFAAQMAGGF---DEKAGGAQLGVMQGPMGPMGPRGPPGPAGAP-GPQGF 223
Query: 162 RRVAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGG 221
+ E +P + P P+ P G DG P G G
Sbjct: 224 QGNPGEPGEPGVS------------GPMGPRGPPGPPGKPGDDGEAGKP------GKAGE 265
Query: 222 RGPSAELASRYWGRRRALPGAADLRP----KGARADDRRPLRAGRKLHLPEAAR------ 271
RGP +R + LPG R GA+ + P G E
Sbjct: 266 RGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP 325
Query: 272 --LPGNVGKSGEPHKAGEVGN 290
LPG G++G AG GN
Sbjct: 326 RGLPGERGRTGPAGAAGARGN 346
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 44.7 bits (104), Expect = 1e-04
Identities = 67/251 (26%), Positives = 81/251 (32%), Gaps = 26/251 (10%)
Query: 58 GPSAGAAAR-------PAAPPPQ------PREPGAPGLR--RAPPRTRMDSSGLGPCSEA 102
GP+ A AR PA PP P PGAPG + P R GP E
Sbjct: 267 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP 326
Query: 103 PLHTSAGLSGRNLRAAGGVLPVDLERERAALCARQSG----HGPPAVRWLLGSRGAESGG 158
S G +G + +P A A G GPP + G G + G
Sbjct: 327 GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK-GQ 385
Query: 159 LARRRVAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGG 218
+A + A A P+ + RG G + P R G
Sbjct: 386 TGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGN 445
Query: 219 RGGRGPSAELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGK 278
RG G + R G A PKGA D RP G LP A L G G
Sbjct: 446 RGFPGQDGLAGPKGAPGERGPSGLAG--PKGANGDPGRPGEPG----LPGARGLTGRPGD 499
Query: 279 SGEPHKAGEVG 289
+G K G G
Sbjct: 500 AGPQGKVGPSG 510
Score = 43.5 bits (101), Expect = 2e-04
Identities = 65/239 (27%), Positives = 79/239 (33%), Gaps = 47/239 (19%)
Query: 59 PSAGAAARPAAPPPQPREPGAPGLR-----RAPPRTRMDSSGLGPCSEAPLHTSAGLSGR 113
P A P P Q EPG G + + P GP E + G
Sbjct: 371 PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARG---- 426
Query: 114 NLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAES-GGLARRRVAAEHAQPS 172
GGV P+ GPP R G+RG GLA + A PS
Sbjct: 427 ---EPGGVGPI----------------GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS 467
Query: 173 ANLVCRSALETSAFPPSKPKSPRGR-VRARSSDGRLRHPAWRAGSGGRGGR-GPSAELAS 230
L P +P P R + R D + +G+ G GR GP +
Sbjct: 468 G-LAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGA 526
Query: 231 RYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVG 289
R PG PKGA + P +AG K LPG G G P K GE G
Sbjct: 527 RGQPGVMGFPG-----PKGANGE---PGKAGEK-------GLPGAPGLRGLPGKDGETG 570
Score = 43.1 bits (100), Expect = 3e-04
Identities = 68/250 (27%), Positives = 82/250 (32%), Gaps = 48/250 (19%)
Query: 58 GPSAGAAARPAAP--PPQPREPGAPGLR--------RAPPRTRMDSSGLGPCSEAPLHTS 107
GP AGA+ P P GAPG+ R PP + + LGP +
Sbjct: 333 GP-AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGI 391
Query: 108 AGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAE 167
AG G + Q GP G+RG E GG+ E
Sbjct: 392 AGFKGEQG-----------PKGEPGPAGPQGAPGPAGEEGKRGARG-EPGGVGPIGPPGE 439
Query: 168 HAQPSANLVCRSALETSAFPPSKPKS-PRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSA 226
P FP + P+G R G L P G GR G P
Sbjct: 440 RGAPG----------NRGFPGQDGLAGPKGAPGERGPSG-LAGPKGANGDPGRPGE-PGL 487
Query: 227 ELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAAR-------LPGNVGKS 279
A GR + P GA +D RP G P+ AR PG G +
Sbjct: 488 PGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPG-----PQGARGQPGVMGFPGPKGAN 542
Query: 280 GEPHKAGEVG 289
GEP KAGE G
Sbjct: 543 GEPGKAGEKG 552
Score = 36.6 bits (83), Expect = 0.027
Identities = 64/244 (26%), Positives = 82/244 (33%), Gaps = 25/244 (10%)
Query: 53 GEDLAGPSAGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGL-GPCSEAPLHTSAGLS 111
GE A +G P P P P E G PG + P + GL GP E G
Sbjct: 585 GEQGAPGPSGFQGLPGPPGP-PGEGGKPGDQGVPGEA--GAPGLVGPRGERGFPGERGSP 641
Query: 112 G----RNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAE--SGGLARRRVA 165
G + R G D + + GPP ++ + G RGA +G R
Sbjct: 642 GAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV 701
Query: 166 AEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPS 225
E A + + P P G A G + P +G RG G
Sbjct: 702 GEKGPEGA------PGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER 755
Query: 226 AELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKA 285
E PG AD +P GA+ + AG+K A PG G SG P
Sbjct: 756 GETGPPGPAGFAGPPG-ADGQP-GAKGEQG---EAGQK----GDAGAPGPQGPSGAPGPQ 806
Query: 286 GEVG 289
G G
Sbjct: 807 GPTG 810
Score = 35.0 bits (79), Expect = 0.079
Identities = 67/264 (25%), Positives = 83/264 (31%), Gaps = 54/264 (20%)
Query: 53 GEDLAGPSAGAAARPAAPPP-----QPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTS 107
G D ++G A P A P P E GA G+ P R D GP
Sbjct: 657 GTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIA-GPKGDRGDVGEKGPEGAPGKDGG 715
Query: 108 AGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGA-----ESGGLARR 162
GL+G G P E+ + GPP G+RGA E+G
Sbjct: 716 RGLTG----PIGPPGPAGANGEKGEV-------GPPGPAGSAGARGAPGERGETGPPGPA 764
Query: 163 RVAAE---HAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGR 219
A QP A A + P+ P G + G G R
Sbjct: 765 GFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVT------GPKGAR 818
Query: 220 GGRGPSAELASRYWGRRRALPGA-------------ADLRPKGARADDRRPLRAGRKLHL 266
G +GP R PG+ PKGAR D P RAG
Sbjct: 819 GAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGE---- 874
Query: 267 PEAARLPGNVGKSGEPHKAGEVGN 290
PG G +G P + GE G+
Sbjct: 875 ------PGLQGPAGPPGEKGEPGD 892
Score = 34.3 bits (77), Expect = 0.13
Identities = 60/244 (24%), Positives = 72/244 (29%), Gaps = 22/244 (9%)
Query: 62 GAAARPAAPPPQ-----PREPGAPGLR--------RAPPRTRMDSSGLGPCSEAPLHTSA 108
G AP PQ P EPG PG+ PP D G +A
Sbjct: 141 GPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPP 200
Query: 109 GLSG-RNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRG--AESGGLARRRVA 165
G G R G+ V R L + G P V+ GS G G + R +
Sbjct: 201 GPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP 260
Query: 166 AEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPS 225
E + + P+ P P G G P + +G G RGP
Sbjct: 261 GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGA---PGAKGEAGPTGARGPE 317
Query: 226 AELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKA 285
R PG A G D P G P A PG G G P
Sbjct: 318 GAQGPRGEPGTPGSPGPAG--ASGNPGTDGIPGAKG-SAGAPGIAGAPGFPGPRGPPGPQ 374
Query: 286 GEVG 289
G G
Sbjct: 375 GATG 378
Score = 33.1 bits (74), Expect = 0.30
Identities = 56/233 (24%), Positives = 72/233 (30%), Gaps = 22/233 (9%)
Query: 62 GAAARPAAPPP--QPREPGAPGLR--RAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRA 117
G P P P +P + GAPG R PP GP E S G G R
Sbjct: 921 GERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR- 979
Query: 118 AGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVC 177
G V +R GPP G G + R A+ +
Sbjct: 980 -DGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGD---RGEAGAQGPMGPSGPAG 1035
Query: 178 RSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRR 237
++ P P+ +G G H + G G GPS G +
Sbjct: 1036 ARGIQG----PQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPS--------GDQG 1083
Query: 238 ALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVGN 290
A A P+G + G +P PG G+SGE AG GN
Sbjct: 1084 ASGPAGPSGPRGPPGPVGPSGKDGAN-GIPGPIGPPGPRGRSGETGPAGPPGN 1135
Score = 32.7 bits (73), Expect = 0.39
Identities = 64/241 (26%), Positives = 79/241 (32%), Gaps = 48/241 (19%)
Query: 58 GPSAGAAARPAAPPPQPREPGAPGLR--RAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNL 115
GP+ A AR A P + E G PG PP G EA AG G
Sbjct: 741 GPAGSAGARGA--PGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ- 797
Query: 116 RAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAES--GGLARRRVAAEHAQPSA 173
+G P GP V G+RGA+ G A P +
Sbjct: 798 GPSGAPGP----------------QGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGS 841
Query: 174 NLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYW 233
N + PP P P G+ + + G P G +G GP E
Sbjct: 842 N--------GNPGPPGPP-GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGE------ 886
Query: 234 GRRRALPGAADLRPKGARADDRRPLRAGRK--LHLPEAAR---LPGNVGKSGEPHKAGEV 288
+ PG D P GA AG++ + LP PG G SGEP K G
Sbjct: 887 ---KGEPG--DDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAP 941
Query: 289 G 289
G
Sbjct: 942 G 942
Score = 32.0 bits (71), Expect = 0.67
Identities = 32/107 (29%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 188 PSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLR- 246
P P P G + G P SG G RGP PG A R
Sbjct: 139 PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERG 198
Query: 247 ---PKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVGN 290
P+GAR P G K H L G G++G P GE G+
Sbjct: 199 PPGPQGARGFPGTPGLPGVKGHRGYPG-LDGAKGEAGAPGVKGESGS 244
Score = 32.0 bits (71), Expect = 0.67
Identities = 38/152 (25%), Positives = 54/152 (35%), Gaps = 56/152 (36%)
Query: 67 PAAPPPQPREPGAPGLRRAPPRTRMDSS---GLGPCSEAPLHTSAGLSGRNLRAAGGVLP 123
PA PP P PG PG PP +D S GLGP
Sbjct: 1129 PAGPPGNPGPPGPPG----PPGPGIDMSAFAGLGP------------------------- 1159
Query: 124 VDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSALET 183
RE+ GP ++++ + A GGL + + S N + +E+
Sbjct: 1160 ----REK----------GPDPLQYMRADQAA--GGLRQHDAEVDATLKSLN----NQIES 1199
Query: 184 SAFPPSKPKSPRGRVRARSSDGRLRHPAWRAG 215
P K+P R D +L HP W++G
Sbjct: 1200 IRSPEGSRKNPARTCR----DLKLCHPEWKSG 1227
Score = 31.2 bits (69), Expect = 1.1
Identities = 67/261 (25%), Positives = 82/261 (31%), Gaps = 51/261 (19%)
Query: 54 EDLAGPSAGAAARPAAPPPQPR-------EPGAPGLRRAPPRTRMDSSGL----GPCSEA 102
+D+ GP + A PR E GAPG PR R G GP
Sbjct: 44 KDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPG-----PRGRDGEPGTPGNPGPPGPP 98
Query: 103 PLHTSAGLSGR-NLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLAR 161
GL G + AGG D + A L Q GP R G GA G
Sbjct: 99 GPPGPPGLGGNFAAQMAGGF---DEKAGGAQLGVMQGPMGPMGPRGPPGPAGAP-GPQGF 154
Query: 162 RRVAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGG 221
+ E +P + P P+ P G DG P G G
Sbjct: 155 QGNPGEPGEPGVS------------GPMGPRGPPGPPGKPGDDGEAGKP------GKAGE 196
Query: 222 RGPSAELASRYWGRRRALPGAADLRP----KGARADDRRPLRAGRKLHLPEAAR------ 271
RGP +R + LPG R GA+ + P G E
Sbjct: 197 RGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP 256
Query: 272 --LPGNVGKSGEPHKAGEVGN 290
LPG G++G AG GN
Sbjct: 257 RGLPGERGRTGPAGAAGARGN 277
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 44.3 bits (103), Expect = 1e-04
Identities = 62/224 (27%), Positives = 87/224 (38%), Gaps = 40/224 (17%)
Query: 31 AGEVVRGRDPRRLRTSRSTEIL----GEDLAGPS---AGAAARPAAPPPQPREPGAPGLR 83
AGE R+ RTSR+ L AGP AG+A P+ A LR
Sbjct: 84 AGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASALR 143
Query: 84 RAPPRTRMDSSG-------LGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLERERAALC-- 134
R P T+ D+SG GP + P + +G + + P+ L + + C
Sbjct: 144 R--PLTQWDASGGGGRGSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQG 201
Query: 135 --ARQSGHG-PPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSALETSAFPPSKP 191
+ G G PP R L G +G A+ R + + A P + L PPS
Sbjct: 202 LGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTL-----------PPSSV 250
Query: 192 KSPRGRVRARSSDG----RLRHPAWRAGSGGRGGRGPSAELASR 231
+ RAR G R P+ + SGGR P+ E +SR
Sbjct: 251 LAGCVGTRARGHGGVQRQRFSAPSSHSTSGGR----PTGERSSR 290
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 44.3 bits (103), Expect = 1e-04
Identities = 62/224 (27%), Positives = 87/224 (38%), Gaps = 40/224 (17%)
Query: 31 AGEVVRGRDPRRLRTSRSTEIL----GEDLAGPS---AGAAARPAAPPPQPREPGAPGLR 83
AGE R+ RTSR+ L AGP AG+A P+ A LR
Sbjct: 84 AGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASALR 143
Query: 84 RAPPRTRMDSSG-------LGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLERERAALC-- 134
R P T+ D+SG GP + P + +G + + P+ L + + C
Sbjct: 144 R--PLTQWDASGGGGRGSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQG 201
Query: 135 --ARQSGHG-PPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSALETSAFPPSKP 191
+ G G PP R L G +G A+ R + + A P + L PPS
Sbjct: 202 LGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTL-----------PPSSV 250
Query: 192 KSPRGRVRARSSDG----RLRHPAWRAGSGGRGGRGPSAELASR 231
+ RAR G R P+ + SGGR P+ E +SR
Sbjct: 251 LAGCVGTRARGHGGVQRQRFSAPSSHSTSGGR----PTGERSSR 290
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 43.9 bits (102), Expect = 2e-04
Identities = 39/146 (26%), Positives = 54/146 (36%), Gaps = 12/146 (8%)
Query: 59 PSAGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAA 118
P AG P PPP P P PGL + +G GP PL + G G A
Sbjct: 165 PPAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAAQGPGGGGAGAP 224
Query: 119 GGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGG---------LARRRVAAEHA 169
G + + R ++ GP A + G GG LARRR A +
Sbjct: 225 GLAAAIAGAKLRKVSKQEEASGGPTAPK---AESGRSGGGGLMEEMNAMLARRRKATQVG 281
Query: 170 QPSANLVCRSALETSAFPPSKPKSPR 195
+ + + E A P++ +S R
Sbjct: 282 EKTPKDESANQEEPEARVPAQSESVR 307
>gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 316
Score = 43.9 bits (102), Expect = 2e-04
Identities = 65/207 (31%), Positives = 83/207 (40%), Gaps = 36/207 (17%)
Query: 41 RRLRTSRSTEILGEDLAGPSAGAAA-RPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPC 99
R RT S+ LG GP+AG+A R + P+ PGA G R A R + G G C
Sbjct: 50 RAKRTVLSSPSLG---GGPAAGSAILRAGSRSPRGAGPGAAGPRAAG---RGGAGGGGRC 103
Query: 100 SEAPL--HTSAGLSGRNLRAAGGVLPVDLERERAA------LCARQSG-HGPPAVRWLLG 150
AG GR R+ G P A L R++ PA+ +
Sbjct: 104 CTRGRGRFPCAGSGGRGARSRGCHSPSCCRSSSCAWHRWPQLRGREADPRASPALLICIA 163
Query: 151 SRGAES-------GGLARRRVAAEHAQP---SANLVCRSALETSAFPPSKPKS-PRGRVR 199
R + G A +AA+ AQP SA R T A PP+ P+ P G
Sbjct: 164 PRPRPALPAALHIGARATAGLAAKRAQPQLCSAGTAARGR-RTRASPPTPPRPRPPG--- 219
Query: 200 ARSSD-----GRLRHPAWRAGSGGRGG 221
RS D R+ P R G+GGRGG
Sbjct: 220 LRSGDVPRGGARVERPTGRRGAGGRGG 246
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 43.5 bits (101), Expect = 2e-04
Identities = 75/275 (27%), Positives = 90/275 (32%), Gaps = 57/275 (20%)
Query: 40 PRRLRTSRSTEILGEDLAGPSAGAAARPAAPPPQPREPGAPGLRRAP--------PRTRM 91
P+ R S + + + P AA PA P +PGA G AP P R
Sbjct: 357 PQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARG 416
Query: 92 DSSGLGPCSEAPLHTSAGLSGR-----NLRAAGGVLPVDLERERAALCARQSGHGPPAVR 146
S GP ++G G + A G PV ++ GPP
Sbjct: 417 PSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQ-------------GPPGPA 463
Query: 147 WLLGSRGA--ESGGLARRRVAAEHAQPSANLVCRSALETSAFPPSK-PKSPRGRVRARSS 203
G RGA E G E P + FP + P+G R S
Sbjct: 464 GEEGKRGARGEPGPTGLPGPPGERGGPGSR----------GFPGADGVAGPKGPAGERGS 513
Query: 204 DGRLRHPAWRAGSGGRGGRGPSAEL--ASRYWGRRRALPGAADLRPKGARADDRRPLRAG 261
G PA GS G GR A L A G + P G D RP G
Sbjct: 514 PG----PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPG 569
Query: 262 RKLHLPEAAR-------LPGNVGKSGEPHKAGEVG 289
P AR PG G +GEP KAGE G
Sbjct: 570 -----PPGARGQAGVMGFPGPKGAAGEPGKAGERG 599
Score = 38.9 bits (89), Expect = 0.005
Identities = 64/242 (26%), Positives = 80/242 (33%), Gaps = 38/242 (15%)
Query: 58 GPSAGAAAR----PAAPPPQPREPGAPGLRRAP-PRTRMDSSGLGPCSEAPLHTSAGLSG 112
GP R PA PP + PG PGL P P GLG L G
Sbjct: 112 GPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLS-----YG 166
Query: 113 RNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPS 172
+ ++ GG+ + GP R L G GA G + E +P
Sbjct: 167 YDEKSTGGI-------------SVPGPMGPSGPRGLPGPPGA-PGPQGFQGPPGEPGEPG 212
Query: 173 ANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRG-PSAELASR 231
A + P P P G+ G+ P R G +G RG P
Sbjct: 213 A---------SGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPG 263
Query: 232 YWGRR--RALPGA-ADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEV 288
G R L GA D P G + + P G + LPG G+ G P AG
Sbjct: 264 MKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG-LPGERGRPGAPGPAGAR 322
Query: 289 GN 290
GN
Sbjct: 323 GN 324
Score = 35.0 bits (79), Expect = 0.079
Identities = 68/263 (25%), Positives = 83/263 (31%), Gaps = 47/263 (17%)
Query: 59 PSAGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGLG---PCSEAPLHTSAGLSGRNL 115
P P P Q PG PG PP R + +G P A AG G
Sbjct: 547 PGPDGKTGPPGPAGQDGRPGPPG----PPGARGQAGVMGFPGPKGAAGEPGKAGERGVP- 601
Query: 116 RAAGGVLPVDLERERAALC-----------ARQSGHGPPAVRWLLGSRG--AESGGLARR 162
G V P + E A Q G P + L G G E+G +
Sbjct: 602 GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ 661
Query: 163 RVAAEHAQPSANLVCRSALETSAFP-------PSKPKSPRGRVRARSSDGRLRHPAWRAG 215
V + P + A FP P P PRG A +DG
Sbjct: 662 GVPGDLGAPGPS----GARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGA 717
Query: 216 SGGRGGRGPSAELASRYWGRRRALPG----AADLRPKGARADDRRPLRAGRK-----LHL 266
G +G G R LPG D PKGA D P + G + +
Sbjct: 718 PGSQGAPGLQGMPGER---GAAGLPGPKGDRGDAGPKGA---DGSPGKDGVRGLTGPIGP 771
Query: 267 PEAARLPGNVGKSGEPHKAGEVG 289
P A PG+ G+SG AG G
Sbjct: 772 PGPAGAPGDKGESGPSGPAGPTG 794
Score = 33.9 bits (76), Expect = 0.18
Identities = 73/242 (30%), Positives = 83/242 (34%), Gaps = 45/242 (18%)
Query: 57 AGPSAGAAARPAAPPPQPR-EPGAPGLR--RAPPRTRMDSSGLGPCSEAPLHTSAGLSGR 113
+GPS A A P R EPG PG PP G +A AG G
Sbjct: 784 SGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGP 843
Query: 114 NLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSA 173
AG P+ A AR S GPP G+ G RV PS
Sbjct: 844 -AGPAGPPGPIGNVGAPGAKGARGSA-GPPGATGFPGAAG---------RVGPPG--PSG 890
Query: 174 NLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGS-GGRGGRGPSAELASRY 232
N A PP P P G+ + G PA R G G G GP+ E S
Sbjct: 891 N----------AGPPGPP-GPAGKEGGKGPRGETG-PAGRPGEVGPPGPPGPAGEKGS-- 936
Query: 233 WGRRRALPGAADLRPKGARADDRRPLRAGRK--LHLPEAAR---LPGNVGKSGEPHKAGE 287
PGA P GA AG++ + LP PG G SGEP K G
Sbjct: 937 -------PGADG--PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGP 987
Query: 288 VG 289
G
Sbjct: 988 SG 989
Score = 31.2 bits (69), Expect = 1.1
Identities = 59/247 (23%), Positives = 71/247 (28%), Gaps = 20/247 (8%)
Query: 59 PSAGAAARPAAPPPQPREPGAPGLRRAP--------PRTRMDSSGLGPCSEAPLHTSAGL 110
P A A P P GAPGL+ P P + D GP G+
Sbjct: 703 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGV 762
Query: 111 SGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRG--AESGGLARRRVAAEH 168
G G P ++ GP R G RG G
Sbjct: 763 RGLT-GPIGPPGPAGAPGDKGE-SGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGAD 820
Query: 169 AQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAEL 228
QP A A P P P G G + + G RG GP
Sbjct: 821 GQPGAKGEPGDAGAKGDAGPPGPAGPAG------PPGPIGNVGAPGAKGARGSAGPPGAT 874
Query: 229 ASRYWGRRRALPG-AADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGE 287
R PG + + P G + G + A R PG VG G P AGE
Sbjct: 875 GFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGR-PGEVGPPGPPGPAGE 933
Query: 288 VGNHPRD 294
G+ D
Sbjct: 934 KGSPGAD 940
Score = 30.8 bits (68), Expect = 1.5
Identities = 67/244 (27%), Positives = 82/244 (33%), Gaps = 37/244 (15%)
Query: 55 DLAGPSAGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRN 114
++ P A A A PP PGA G R PP ++ GP A G G
Sbjct: 855 NVGAPGAKGARGSAGPPGATGFPGAAG-RVGPPGPSGNAGPPGPPGPAGKEGGKGPRGET 913
Query: 115 LRAA--GGVLPVDL-----ERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAE 167
A G V P E+ G P + + G RG GL +R E
Sbjct: 914 GPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVV--GLPGQR--GE 969
Query: 168 HAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGR--GPS 225
P L + P K + P G R G + P AG G GR P
Sbjct: 970 RGFPG--------LPGPSGEPGK-QGPSGASGERGPPGPMGPPGL-AGPPGESGREGAPG 1019
Query: 226 AELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKA 285
AE + R PGA KG R + G P A PG VG +G+
Sbjct: 1020 AEGSPG----RDGSPGA-----KGDRGETGPAGPPGA----PGAPGAPGPVGPAGKSGDR 1066
Query: 286 GEVG 289
GE G
Sbjct: 1067 GETG 1070
Score = 29.3 bits (64), Expect = 4.3
Identities = 57/230 (24%), Positives = 71/230 (30%), Gaps = 45/230 (19%)
Query: 67 PAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGGVLPVDL 126
P P P E G PG R P + + GP E AG G A
Sbjct: 477 PTGLPGPPGERGGPGSRGFPGADGV-AGPKGPAGERGSPGPAGPKGSPGEAG-------- 527
Query: 127 ERERAALCARQSGHGPPAVRWLLGSRGAES--GGLARRRVAAEHAQPSANLVCRSALETS 184
R G P + L GS G+ G A + +P
Sbjct: 528 ---------RPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPG------------ 566
Query: 185 AFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGG-RG----PSAELASRYWGRRRAL 239
P P RG+ G P AG G+ G RG P A + G A
Sbjct: 567 ---PPGPPGARGQAGVMGFPG----PKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQ 619
Query: 240 PGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVG 289
P G R + + P + LP A PG GK GE G++G
Sbjct: 620 GPPGPAGPAGERGE-QGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLG 668
Score = 28.1 bits (61), Expect = 9.6
Identities = 40/159 (25%), Positives = 50/159 (31%), Gaps = 29/159 (18%)
Query: 67 PAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGGVLPVDL 126
PA PP P PGAPG +GP ++ G +G AG V PV
Sbjct: 1041 PAGPPGAPGAPGAPG-------------PVGPAGKSGDRGETGPAG----PAGPVGPV-- 1081
Query: 127 ERERAALCARQSGHGPPAVRWLLGSRG--AESGGLARRRVAAEHAQPSANLVCRSALETS 184
+ GP R G G + G R + P +
Sbjct: 1082 --------GARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSG 1133
Query: 185 AFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRG 223
A P+ P+ P G A DG P G RG G
Sbjct: 1134 ASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTG 1172
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 43.5 bits (101), Expect = 2e-04
Identities = 65/207 (31%), Positives = 83/207 (40%), Gaps = 36/207 (17%)
Query: 41 RRLRTSRSTEILGEDLAGPSAGAAA-RPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPC 99
R RT S+ LG GP+AG+A R + P+ PGA G R A R + G G C
Sbjct: 50 RAKRTVLSSPSLG---GGPAAGSAILRAGSRSPRGAGPGAAGPRAAG---RGGAGGGGRC 103
Query: 100 SEAPL--HTSAGLSGRNLRAAGGVLPVDLERERAA------LCARQSG-HGPPAVRWLLG 150
AG GR R+ G P A L R++ PA+ +
Sbjct: 104 CTRGRGRFPCAGSGGRGARSRGCHSPSCCRSSSCAWHRWPQLRGREAEPRASPALLICIA 163
Query: 151 SRGAES-------GGLARRRVAAEHAQP---SANLVCRSALETSAFPPSKPKS-PRGRVR 199
R + G A +AA+ AQP SA R T A PP+ P+ P G
Sbjct: 164 PRPRPALPAALHIGARATAGLAAKRAQPQLCSAGTAARGR-RTRASPPTPPRPRPPG--- 219
Query: 200 ARSSD-----GRLRHPAWRAGSGGRGG 221
RS D R+ P R G+GGRGG
Sbjct: 220 LRSGDVPRGGARVERPTGRRGAGGRGG 246
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 43.5 bits (101), Expect = 2e-04
Identities = 65/207 (31%), Positives = 83/207 (40%), Gaps = 36/207 (17%)
Query: 41 RRLRTSRSTEILGEDLAGPSAGAAA-RPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPC 99
R RT S+ LG GP+AG+A R + P+ PGA G R A R + G G C
Sbjct: 50 RAKRTVLSSPSLG---GGPAAGSAILRAGSRSPRGAGPGAAGPRAAG---RGGAGGGGRC 103
Query: 100 SEAPL--HTSAGLSGRNLRAAGGVLPVDLERERAA------LCARQSG-HGPPAVRWLLG 150
AG GR R+ G P A L R++ PA+ +
Sbjct: 104 CTRGRGRFPCAGSGGRGARSRGCHSPSCCRSSSCAWHRWPQLRGREAEPRASPALLICIA 163
Query: 151 SRGAES-------GGLARRRVAAEHAQP---SANLVCRSALETSAFPPSKPKS-PRGRVR 199
R + G A +AA+ AQP SA R T A PP+ P+ P G
Sbjct: 164 PRPRPALPAALHIGARATAGLAAKRAQPQLCSAGTAARGR-RTRASPPTPPRPRPPG--- 219
Query: 200 ARSSD-----GRLRHPAWRAGSGGRGG 221
RS D R+ P R G+GGRGG
Sbjct: 220 LRSGDVPRGGARVERPTGRRGAGGRGG 246
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 43.5 bits (101), Expect = 2e-04
Identities = 49/184 (26%), Positives = 65/184 (35%), Gaps = 12/184 (6%)
Query: 30 GAGEVVRGRDPRRLRTSRSTEILGEDLAGPSAGAAARPAAPPPQP----REPGAPGLRRA 85
G G + P L R T + AGP A P PPQP + G P +R
Sbjct: 429 GRGSHGQTPSPGALPLGRQTS---QQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRP 485
Query: 86 PPRTRMDSSGLGPCSEAPL--HTSAGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPP 143
PP+ + SGLGP + +PL + S A+ P + ++ A G PP
Sbjct: 486 PPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPG-APP 544
Query: 144 AVRWLLGSRGAESGG--LARRRVAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRAR 201
A R G A R+ + P + PP KP P G R
Sbjct: 545 AARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQA 604
Query: 202 SSDG 205
S G
Sbjct: 605 SQAG 608
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 43.5 bits (101), Expect = 2e-04
Identities = 49/184 (26%), Positives = 65/184 (35%), Gaps = 12/184 (6%)
Query: 30 GAGEVVRGRDPRRLRTSRSTEILGEDLAGPSAGAAARPAAPPPQP----REPGAPGLRRA 85
G G + P L R T + AGP A P PPQP + G P +R
Sbjct: 429 GRGSHGQTPSPGALPLGRQTS---QQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRP 485
Query: 86 PPRTRMDSSGLGPCSEAPL--HTSAGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPP 143
PP+ + SGLGP + +PL + S A+ P + ++ A G PP
Sbjct: 486 PPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPG-APP 544
Query: 144 AVRWLLGSRGAESGG--LARRRVAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRAR 201
A R G A R+ + P + PP KP P G R
Sbjct: 545 AARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQA 604
Query: 202 SSDG 205
S G
Sbjct: 605 SQAG 608
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 42.7 bits (99), Expect = 4e-04
Identities = 65/247 (26%), Positives = 82/247 (33%), Gaps = 36/247 (14%)
Query: 62 GAAARPAAP--PPQPREPGAPGLRRAP--PRTRMDSSGLGPCSEAPLHTSAGLSGRNLRA 117
GA RP +P P PGAPGL+ +P P R D GP G G+ +
Sbjct: 1302 GADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGP---KGEPGAPGQVIGG 1358
Query: 118 AGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAES----GGLARRRVAAEHAQ--- 170
G LP GPP R LG G G A + + +
Sbjct: 1359 EGPGLP--------GRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGP 1410
Query: 171 --PSANLVCRSALETSAFP----PSKPKSPRGR--VRARSSDGRLRHPAWRAGSGGRGGR 222
P + P P P P G+ + S DG P G +G R
Sbjct: 1411 PGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPR 1470
Query: 223 GPSAELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEP 282
GP + + R PG L G + + P AG + LP A PG G G P
Sbjct: 1471 GPPGAIGPK---GDRGFPG--PLGEAGEKGERGPPGPAGSR-GLPGVAGRPGAKGPEGPP 1524
Query: 283 HKAGEVG 289
G G
Sbjct: 1525 GPTGRQG 1531
Score = 42.0 bits (97), Expect = 6e-04
Identities = 65/247 (26%), Positives = 79/247 (31%), Gaps = 35/247 (14%)
Query: 58 GPSAGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRA 117
GP G A P EPG PGL +P GP G G +
Sbjct: 1412 GPGEGGIA--------PGEPGLPGLPGSP----------GPQGPVGPPGKKGEKGDSEDG 1453
Query: 118 AGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPS---AN 174
A G LP + Q GPP G RG G L E P +
Sbjct: 1454 APG-LP-----GQPGSPGEQGPRGPPGAIGPKGDRGFP-GPLGEAGEKGERGPPGPAGSR 1506
Query: 175 LVCRSALETSAFPPSKPKSPRGRVRARSSDGR-----LRHPAWRAGSGGRGGRGPSAELA 229
+ A A P P P GR + GR + PA G +G GP+
Sbjct: 1507 GLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRG 1566
Query: 230 SRYWGRRRALPGAADLRPKGARAD--DRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGE 287
+ R PG G + D DR P+ + P + PG G G P G
Sbjct: 1567 ATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGP 1626
Query: 288 VGNHPRD 294
VG RD
Sbjct: 1627 VGPRGRD 1633
Score = 35.0 bits (79), Expect = 0.079
Identities = 64/250 (25%), Positives = 79/250 (31%), Gaps = 64/250 (25%)
Query: 56 LAGPSAGAAARPAAPPP-------QPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSA 108
+AGP + PP P PGAPGL A P SGL P T
Sbjct: 2160 MAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGL--AGPAGPQGPSGL---KGEPGET-- 2212
Query: 109 GLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEH 168
G GR L G + + GPP L+G +G+
Sbjct: 2213 GPPGRGLTGPTGAVGLP---------------GPPGPSGLVGPQGSPG------------ 2245
Query: 169 AQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAEL 228
L KP +P GR A DG P G G GP E
Sbjct: 2246 ------------LPGQVGETGKPGAP-GRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEP 2292
Query: 229 ASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAAR----LPGNVGKSGEPHK 284
PG A + GA+ + P L A+ LPG G+ GE +
Sbjct: 2293 GPT------GAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGR 2346
Query: 285 AGEVGNHPRD 294
AGE G+ D
Sbjct: 2347 AGEPGDPGED 2356
Score = 33.1 bits (74), Expect = 0.30
Identities = 68/268 (25%), Positives = 91/268 (33%), Gaps = 43/268 (16%)
Query: 54 EDLAGPSAGAAARPAAPPPQPREPGAPGL--RRAPPRTRMDSSGLGPCSEAPLHTSAGLS 111
+ L GPS P P +P E G PGL + P + G ++ G
Sbjct: 1817 QGLPGPSG-----PPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRD 1871
Query: 112 G-RNLRAAGGVL--------PVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARR 162
G + R A G+L P + G GP R GS+G E G R
Sbjct: 1872 GPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKG-EQGLPGER 1930
Query: 163 RVAAEHAQ-PSANLVCRSA----------LET-----SAFPPSK-----PKSPRGRVRAR 201
+ E P+ + + +A +ET +F P PK G
Sbjct: 1931 GLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPP 1990
Query: 202 SSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLRPKGARADDRRPLRAG 261
+G + P R G RG GP R PG + L G P G
Sbjct: 1991 GKEGPIGFPGERGLKGDRGDPGPQGPPGLAL--GERGPPGPSGL--AGEPGKPGIPGLPG 2046
Query: 262 RKLHLPEAARLPGNVGKSGEPHKAGEVG 289
R + EA R PG G+ GE + GE G
Sbjct: 2047 RAGGVGEAGR-PGERGERGEKGERGEQG 2073
Score = 33.1 bits (74), Expect = 0.30
Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 194 PRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLR----PKG 249
P+G+ A G P G RG +G + R R + GA L KG
Sbjct: 2585 PQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKG 2644
Query: 250 ARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVG 289
RP AG K + E PG G+SG P K G +G
Sbjct: 2645 EAGPPGRPGLAGHKGEMGE----PGVPGQSGAPGKEGLIG 2680
Score = 32.0 bits (71), Expect = 0.67
Identities = 60/250 (24%), Positives = 76/250 (30%), Gaps = 64/250 (25%)
Query: 59 PSAGAAARPAAPPPQ--------PREPGAPGLRRAPPRT--RMDSSGLGPCSEAPLHTSA 108
P G P P P P PGAPG+ P +T R + GP E L
Sbjct: 2371 PGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPP 2430
Query: 109 GLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEH 168
G G +P L GPP +G GA + +
Sbjct: 2431 GREG---------IPGPL--------------GPPGPPGSVGPPGASG-------LKGDK 2460
Query: 169 AQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAEL 228
P L P+ RG R DGR R +G G RG E
Sbjct: 2461 GDPGVGL-------------PGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEK 2507
Query: 229 ASRYWGRRRALPGAADL-----RPKGARADDRRPLRAGRKLHLPEAAR----LPGNVGKS 279
+ G + + P+GA+ D R R L + R PG+ G
Sbjct: 2508 GDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGE--RGPRGLDGDKGPRGDNGDPGDKGSK 2565
Query: 280 GEPHKAGEVG 289
GEP G G
Sbjct: 2566 GEPGDKGSAG 2575
Score = 30.0 bits (66), Expect = 2.5
Identities = 55/237 (23%), Positives = 74/237 (31%), Gaps = 43/237 (18%)
Query: 56 LAGPSA--GAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGR 113
L GP GAA P P P + G PG+R + D +GP GL G
Sbjct: 2582 LLGPQGQPGAAGIPG-DPGSPGKDGVPGIRGE----KGDVGFMGP---------RGLKGE 2627
Query: 114 NLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSA 173
R G +D E+ + GPP L G +G + V + P
Sbjct: 2628 --RGVKGACGLDGEK------GDKGEAGPPGRPGLAGHKGE----MGEPGVPGQSGAPGK 2675
Query: 174 NLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYW 233
+ + PK +G R + G P G G GP + R
Sbjct: 2676 EGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPR-- 2733
Query: 234 GRRRALPGAADLRPKGARADD-RRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVG 289
P+G + R R + P PG G+ G P AG G
Sbjct: 2734 ------------GPEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQGRPGPAGPRG 2778
Score = 29.3 bits (64), Expect = 4.3
Identities = 77/266 (28%), Positives = 90/266 (33%), Gaps = 50/266 (18%)
Query: 62 GAAARP--AAPPPQPREPGAPGLRR-APPRTRMDSSGL----GPCSEAPLHTSAGLSGRN 114
G A P + PP + +PG PG PR R G GP + L AG R
Sbjct: 1601 GRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAG--ERG 1658
Query: 115 LRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESG--GLARRRV-----AAE 167
LR A GV E+ +G P G RG E G G R V A E
Sbjct: 1659 LRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRG-EPGPPGPPGRLVDTGPGARE 1717
Query: 168 HAQPSANLVCRSALETSAFPPSKPKSP-----RGRVRARSSDGRLRHPAWRAGSGGRGGR 222
+P E P P P RG R G P R +G +G R
Sbjct: 1718 KGEPGDR-----GQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDR 1772
Query: 223 GPSA-ELASRYWGRRRALPGAADLR-PKGARADDRRP-------LRAGRKLHLPEAAR-- 271
GP + S G+ PGAA P GA P LR + L P
Sbjct: 1773 GPPGLDGRSGLDGK----PGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGL 1828
Query: 272 --------LPGNVGKSGEPHKAGEVG 289
PG GK+GEP GE G
Sbjct: 1829 PGKPGEDGKPGLNGKNGEPGDPGEDG 1854
Score = 28.1 bits (61), Expect = 9.6
Identities = 33/121 (27%), Positives = 41/121 (33%), Gaps = 16/121 (13%)
Query: 173 ANLVCRSALETSAFPPSKP----KSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAEL 228
A +C+++ T P P K +G G++ P G G GP
Sbjct: 1230 ATALCQASFTTQPRPEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPP 1289
Query: 229 ASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEV 288
S R PG AD RP P RAG P PG G G P G+
Sbjct: 1290 GSATAKGERGFPG-ADGRPGS-------PGRAGN----PGTPGAPGLKGSPGLPGPRGDP 1337
Query: 289 G 289
G
Sbjct: 1338 G 1338
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 42.4 bits (98), Expect = 5e-04
Identities = 55/185 (29%), Positives = 68/185 (36%), Gaps = 24/185 (12%)
Query: 22 ATCKNLEGGAGEVVRGRDPRRLRTSRSTE-ILGEDLAG-PSAGAAARPAAPPPQPREPGA 79
A + G + R R R R + S E G +++G P + RPAA PP PR
Sbjct: 34 AAFRTCSSGTCRLTRSRKSRLERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSP 93
Query: 80 PG-------LRRAPPRTRMDSSG--LGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLERER 130
PG PPR SG L P + P G S + RA+
Sbjct: 94 PGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGP---RPGCS--SARASPAPAAPQAAART 148
Query: 131 AALCARQSGHGPPAVRWLLGSRGAESGGL-ARRRVAAEHAQPSANLVCRSALETSAFPPS 189
A A G GP GSRG S + AR A P CR+A SA P
Sbjct: 149 APGRAASGGSGP-------GSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFR 201
Query: 190 KPKSP 194
+P P
Sbjct: 202 RPGLP 206
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 42.4 bits (98), Expect = 5e-04
Identities = 72/269 (26%), Positives = 84/269 (31%), Gaps = 53/269 (19%)
Query: 54 EDLAGPSAGAAARPAAPPPQPREPGAPGLR-----------RAPPRT--RMDSSGLG--- 97
+ + GPS P PP P +PG PG R PP T M G
Sbjct: 400 QGVVGPSG-----PPGPPGFPGDPGPPGPAGLPGIPGIDGIRGPPGTVIMMPFQFAGGSF 454
Query: 98 ---PCSEAPLHTSAGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGA 154
P S A L L G PV L R G P L G GA
Sbjct: 455 KGPPVSFQQAQAQAVLQQTQLSMKGPPGPV-------GLTGRPGPVGLPGHPGLKGEEGA 507
Query: 155 ESGGLARRRVAAEHAQPS-ANLVCRSALETSAFPPSK--PKSPRG---------RVRARS 202
E G R + H P + R + + P PK RG R
Sbjct: 508 E-GPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRG 566
Query: 203 SDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLRPKGARADDRRPLRAGR 262
G + P G RG GP R L G P+G+ RP G
Sbjct: 567 DFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLG-----PRGSPGPTGRPGVTG- 620
Query: 263 KLHLPEAARLPGNVGKSGEPHKAGEVGNH 291
+ A GNVG GEP G+ GNH
Sbjct: 621 ---IDGAPGAKGNVGPPGEPGPPGQQGNH 646
Score = 36.2 bits (82), Expect = 0.035
Identities = 57/223 (25%), Positives = 75/223 (33%), Gaps = 40/223 (17%)
Query: 73 QPREPGAPGLRRA--PPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLERER 130
QP PG G R A PP + GP S G +GR GV +D
Sbjct: 573 QPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRP-----GVTGID----- 622
Query: 131 AALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSALETSAFPPSK 190
G P + +G G E G ++ P + + E PP
Sbjct: 623 ----------GAPGAKGNVGPPG-EPGPPGQQGNHGSQGLPGPQGLIGTPGEKG--PPGN 669
Query: 191 PKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLR---- 246
P P SDG L HP +G +G +GP + R + G + R
Sbjct: 670 PGIPG----LPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGLQG 725
Query: 247 PKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVG 289
KG + +D P G L G+ GK G P GE G
Sbjct: 726 EKGEKGEDGFPGFKG-------DVGLKGDQGKPGAPGPRGEDG 761
Score = 34.3 bits (77), Expect = 0.13
Identities = 64/244 (26%), Positives = 80/244 (32%), Gaps = 46/244 (18%)
Query: 57 AGPSAGAAAR-PAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNL 115
AGP R PA P P GA G RR PP G + GL G L
Sbjct: 1096 AGPPGQPGIRGPAGHPGPPGADGAQG-RRGPPGLFGQKGDDGVRGFVGVIGPPGLQG--L 1152
Query: 116 RAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAES-----GGLARRRVAAEHAQ 170
G E+ HG P R G G+E GG+ + E +
Sbjct: 1153 PGPPG------EKGEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGE 1206
Query: 171 PSANLVCRSALETSAFPPSKP--KSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAEL 228
PP P P+G + + G P+ AG G+ +GP E
Sbjct: 1207 RGD--------AGDPGPPGAPGIPGPKGDIGEKGDSG----PSGAAGPPGK--KGPPGED 1252
Query: 229 ASRYWGRRRALPGAADLRPKG---ARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKA 285
++ LPG DL P G D P G PG+VG G P +
Sbjct: 1253 GAKGSVGPTGLPG--DLGPPGDPGVSGIDGSPGEKGD----------PGDVGGPGPPGAS 1300
Query: 286 GEVG 289
GE G
Sbjct: 1301 GEPG 1304
Score = 33.5 bits (75), Expect = 0.23
Identities = 62/238 (26%), Positives = 77/238 (32%), Gaps = 40/238 (16%)
Query: 53 GEDLAGPSAGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSG-LGPCSEAPLHTSAGLS 111
GE+ SAG + P P PG PG P+ + G LGP E G
Sbjct: 773 GEEGPPGSAGEKGKLGVPG-LPGYPGRPG-----PKGSIGFPGPLGPIGEKGKSGKTGQP 826
Query: 112 GRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQP 171
G LE ER GPP R G GA + V + A
Sbjct: 827 G-------------LEGER----------GPPGSRGERGQPGATGQPGPKGDVGQDGAP- 862
Query: 172 SANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASR 231
+ L PP P P+G + DGR HP R G +G GP
Sbjct: 863 --GIPGEKGLPGLQGPPGFP-GPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPA--- 916
Query: 232 YWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVG 289
G ++ P G R P G + LP G G+ G P G+ G
Sbjct: 917 --GVLGPQGKTGEVGPLGERGPPGPPGPPGEQ-GLPGLEGREGAKGELGPPGPLGKEG 971
Score = 30.0 bits (66), Expect = 2.5
Identities = 75/285 (26%), Positives = 92/285 (32%), Gaps = 75/285 (26%)
Query: 8 PTRLPRRLSPFWDPATCKNLEGGAGEVVRGRDPRRLRTSRSTEILGEDLAGPSAGAAARP 67
PT LP L P DP ++G GE +G DP D+ GP
Sbjct: 1260 PTGLPGDLGPPGDPGV-SGIDGSPGE--KG-DPG-------------DVGGPG------- 1295
Query: 68 AAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLE 127
PP EPGAPG PP R GP +G GR R E
Sbjct: 1296 --PPGASGEPGAPG----PPGKR------GP---------SGHMGREGR----------E 1324
Query: 128 RERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSAL--ETSA 185
E+ A GPP +G+RG RV E + V L
Sbjct: 1325 GEKGAK-GEPGPDGPPGRTGPMGARGPPG------RVGPEGLRGIPGPVGEPGLLGAPGQ 1377
Query: 186 FPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGR-GPSAELASRYWGRRRALPGAAD 244
P P P G + G P G G G GP E + + LPG
Sbjct: 1378 MGPPGPLGPSGLPGLKGDTG----PKGEKGHIGLIGLIGPPGEAGEK---GDQGLPGVQG 1430
Query: 245 LRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVG 289
P G + D P G H P + G +G+ G G +G
Sbjct: 1431 --PPGPKGDPGPPGPIGSLGH-PGPPGVAGPLGQKGSKGSPGSMG 1472
Score = 28.1 bits (61), Expect = 9.6
Identities = 69/260 (26%), Positives = 79/260 (30%), Gaps = 55/260 (21%)
Query: 52 LGEDLAGPSAGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLS 111
+G+D A G P P PG PG + P D P L G
Sbjct: 856 VGQDGAPGIPGEKGLPGLQGP----PGFPGPKGPPGHQGKDGRPGHPGQRGEL----GFQ 907
Query: 112 GRN--LRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHA 169
G+ AG + P E L R GPP G +G GL R A
Sbjct: 908 GQTGPPGPAGVLGPQGKTGEVGPLGER----GPPGPPGPPGEQGLP--GLEGREGAKGEL 961
Query: 170 QPSANLVCRSALETSAFP-----PSKP--------KSPRGRVRARSSDGRLRHPAWRAG- 215
P L FP P P K P G V A S G R P AG
Sbjct: 962 GPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGE-RGPLGPAGG 1020
Query: 216 ------SGGRGGRGPSAELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEA 269
SG G GP+ + SR + P G D P G
Sbjct: 1021 IGLPGQSGSEGPVGPAGKKGSR-----------GERGPPGPTGKDGIPGPLG-------P 1062
Query: 270 ARLPGNVGKSGEPHKAGEVG 289
PG G SGE G+VG
Sbjct: 1063 LGPPGAAGPSGEEGDKGDVG 1082
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 42.4 bits (98), Expect = 5e-04
Identities = 59/263 (22%), Positives = 87/263 (33%), Gaps = 38/263 (14%)
Query: 40 PRRLRTSRSTEILGEDLAGPSAGAAARPAAPPPQ--------PREPGAPGLRRAPPRTRM 91
P LR+S+ + GE G P P P P G PGL PP +
Sbjct: 197 PAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLP-GPPGPKG 255
Query: 92 DSSGLGPCSEAPLHTSAGLSGRN-LRAAGGVLPVDLERERA--ALCARQSGHGPPAVRWL 148
D G G+ G++ + A G+ ++ E + G P + L
Sbjct: 256 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGL 315
Query: 149 LGSRGAESGGLARRRVAAEHAQPSANLVCRSALETSAFPPSKP--KSPRGRVRARSSDGR 206
LG +G + G A + +P PP P P+G G
Sbjct: 316 LGQKGEK--GDAGNSIGGGRGEPG--------------PPGLPGPPGPKGEAGVDGQVGP 359
Query: 207 LRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHL 266
P + G G +GP S+ PG ++ ++ L+ R L L
Sbjct: 360 PGQPGDKGERGAAGEQGPDGPKGSK------GEPGKGEMVDYNGNINEA--LQEIRTLAL 411
Query: 267 PEAARLPGNVGKSGEPHKAGEVG 289
LPG +G G P G+ G
Sbjct: 412 MGPPGLPGQIGPPGAPGIPGQKG 434
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 42.4 bits (98), Expect = 5e-04
Identities = 59/263 (22%), Positives = 87/263 (33%), Gaps = 38/263 (14%)
Query: 40 PRRLRTSRSTEILGEDLAGPSAGAAARPAAPPPQ--------PREPGAPGLRRAPPRTRM 91
P LR+S+ + GE G P P P P G PGL PP +
Sbjct: 188 PAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLP-GPPGPKG 246
Query: 92 DSSGLGPCSEAPLHTSAGLSGRN-LRAAGGVLPVDLERERA--ALCARQSGHGPPAVRWL 148
D G G+ G++ + A G+ ++ E + G P + L
Sbjct: 247 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGL 306
Query: 149 LGSRGAESGGLARRRVAAEHAQPSANLVCRSALETSAFPPSKP--KSPRGRVRARSSDGR 206
LG +G + G A + +P PP P P+G G
Sbjct: 307 LGQKGEK--GDAGNSIGGGRGEPG--------------PPGLPGPPGPKGEAGVDGQVGP 350
Query: 207 LRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHL 266
P + G G +GP S+ PG ++ ++ L+ R L L
Sbjct: 351 PGQPGDKGERGAAGEQGPDGPKGSK------GEPGKGEMVDYNGNINEA--LQEIRTLAL 402
Query: 267 PEAARLPGNVGKSGEPHKAGEVG 289
LPG +G G P G+ G
Sbjct: 403 MGPPGLPGQIGPPGAPGIPGQKG 425
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,208,784
Number of Sequences: 37866
Number of extensions: 894913
Number of successful extensions: 11162
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 712
Number of HSP's that attempted gapping in prelim test: 8278
Number of HSP's gapped (non-prelim): 3017
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.