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Search of human proteins with 189491628
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|189491628 enamelin [Homo sapiens]
(1142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|189491628 enamelin [Homo sapiens] 2447 0.0
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 74 8e-13
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 64 8e-10
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 61 5e-09
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 60 1e-08
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 60 1e-08
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 60 2e-08
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 58 4e-08
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 58 6e-08
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 53 1e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 52 2e-06
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 52 3e-06
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 51 5e-06
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 51 5e-06
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 51 5e-06
gi|56117844 synovial sarcoma translocation, chromosome 18 isofor... 51 7e-06
gi|150170670 piccolo isoform 2 [Homo sapiens] 51 7e-06
gi|150378539 piccolo isoform 1 [Homo sapiens] 51 7e-06
gi|56117846 synovial sarcoma translocation, chromosome 18 isofor... 49 3e-05
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 49 3e-05
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 49 4e-05
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 49 4e-05
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 49 4e-05
gi|41281612 zinc finger protein 828 [Homo sapiens] 48 5e-05
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 47 8e-05
gi|146134388 YLP motif containing 1 [Homo sapiens] 47 8e-05
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 47 1e-04
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 47 1e-04
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 47 1e-04
gi|54860079 nadrin isoform 1 [Homo sapiens] 47 1e-04
>gi|189491628 enamelin [Homo sapiens]
Length = 1142
Score = 2447 bits (6342), Expect = 0.0
Identities = 1142/1142 (100%), Positives = 1142/1142 (100%)
Query: 1 MLVLRCRLGTSFPKLDNLVPKGKMKILLVFLGLLGNSVAMPMHMPRMPGFSSKSEEMMRY 60
MLVLRCRLGTSFPKLDNLVPKGKMKILLVFLGLLGNSVAMPMHMPRMPGFSSKSEEMMRY
Sbjct: 1 MLVLRCRLGTSFPKLDNLVPKGKMKILLVFLGLLGNSVAMPMHMPRMPGFSSKSEEMMRY 60
Query: 61 NQFNFMNGPHMAHLGPFFGNGLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQ 120
NQFNFMNGPHMAHLGPFFGNGLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQ
Sbjct: 61 NQFNFMNGPHMAHLGPFFGNGLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQ 120
Query: 121 ETQKPNQTQSKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRL 180
ETQKPNQTQSKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRL
Sbjct: 121 ETQKPNQTQSKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRL 180
Query: 181 PPPGYGRPPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGT 240
PPPGYGRPPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGT
Sbjct: 181 PPPGYGRPPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGT 240
Query: 241 EPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQ 300
EPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQ
Sbjct: 241 EPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQ 300
Query: 301 GGPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPR 360
GGPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPR
Sbjct: 301 GGPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPR 360
Query: 361 WNFFAWERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPL 420
WNFFAWERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPL
Sbjct: 361 WNFFAWERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPL 420
Query: 421 GPKPGPVVRNEKIQNPKEKPLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYM 480
GPKPGPVVRNEKIQNPKEKPLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYM
Sbjct: 421 GPKPGPVVRNEKIQNPKEKPLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYM 480
Query: 481 PVPNFNSVDQHENSYYPRGDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKH 540
PVPNFNSVDQHENSYYPRGDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKH
Sbjct: 481 PVPNFNSVDQHENSYYPRGDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKH 540
Query: 541 SSYQPAVYPEEIPSPAKEHFPAGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGSRGSVFY 600
SSYQPAVYPEEIPSPAKEHFPAGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGSRGSVFY
Sbjct: 541 SSYQPAVYPEEIPSPAKEHFPAGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGSRGSVFY 600
Query: 601 PEYNPYDPRENSPYLRGNTWDERDDSPNTMGQKESPLYPINTPDQKEIVPYNEEDPVDPT 660
PEYNPYDPRENSPYLRGNTWDERDDSPNTMGQKESPLYPINTPDQKEIVPYNEEDPVDPT
Sbjct: 601 PEYNPYDPRENSPYLRGNTWDERDDSPNTMGQKESPLYPINTPDQKEIVPYNEEDPVDPT 660
Query: 661 GDEVFPGQNRWGEELSFKGGPTVRHYEGEQYTSNQPKEYLPYSLDNPSKPREDFYYSEFY 720
GDEVFPGQNRWGEELSFKGGPTVRHYEGEQYTSNQPKEYLPYSLDNPSKPREDFYYSEFY
Sbjct: 661 GDEVFPGQNRWGEELSFKGGPTVRHYEGEQYTSNQPKEYLPYSLDNPSKPREDFYYSEFY 720
Query: 721 PWSPDENFPSYNTASTMPPPIESRGYYVNNAAGPEESTLFPSRNSWDHRIQAQGQRERRP 780
PWSPDENFPSYNTASTMPPPIESRGYYVNNAAGPEESTLFPSRNSWDHRIQAQGQRERRP
Sbjct: 721 PWSPDENFPSYNTASTMPPPIESRGYYVNNAAGPEESTLFPSRNSWDHRIQAQGQRERRP 780
Query: 781 YFNRNIWDQATHLQKAPARPPDQKGNQPYYSNTPAGLQKNPIWHEGENLNYGMQITRMNS 840
YFNRNIWDQATHLQKAPARPPDQKGNQPYYSNTPAGLQKNPIWHEGENLNYGMQITRMNS
Sbjct: 781 YFNRNIWDQATHLQKAPARPPDQKGNQPYYSNTPAGLQKNPIWHEGENLNYGMQITRMNS 840
Query: 841 PEREHSSFPNFIPPSYPSGQKEAHLFHLSQRGSCCAGSSTGPKDNPLALQDYTPSYGLAP 900
PEREHSSFPNFIPPSYPSGQKEAHLFHLSQRGSCCAGSSTGPKDNPLALQDYTPSYGLAP
Sbjct: 841 PEREHSSFPNFIPPSYPSGQKEAHLFHLSQRGSCCAGSSTGPKDNPLALQDYTPSYGLAP 900
Query: 901 GENQDTSPLYTDGSHTKQTRDIISPTSILPGQRNSSEKRESQNPFRDDVSTLRRNTPCSI 960
GENQDTSPLYTDGSHTKQTRDIISPTSILPGQRNSSEKRESQNPFRDDVSTLRRNTPCSI
Sbjct: 901 GENQDTSPLYTDGSHTKQTRDIISPTSILPGQRNSSEKRESQNPFRDDVSTLRRNTPCSI 960
Query: 961 KNQLGQKEIMPFPEASSLQSKNTPCLKNDLGGDGNNILEQVFEDNQLNERTVDLTPEQLV 1020
KNQLGQKEIMPFPEASSLQSKNTPCLKNDLGGDGNNILEQVFEDNQLNERTVDLTPEQLV
Sbjct: 961 KNQLGQKEIMPFPEASSLQSKNTPCLKNDLGGDGNNILEQVFEDNQLNERTVDLTPEQLV 1020
Query: 1021 IGTPDEGSNPEGIQSQVQENESERQQQRPSNILHLPCFGSKLAKHHSSTTGTPSSDGRQS 1080
IGTPDEGSNPEGIQSQVQENESERQQQRPSNILHLPCFGSKLAKHHSSTTGTPSSDGRQS
Sbjct: 1021 IGTPDEGSNPEGIQSQVQENESERQQQRPSNILHLPCFGSKLAKHHSSTTGTPSSDGRQS 1080
Query: 1081 PFDGDSITPTENPNTLVELATEEQFKSINVDPLDADEHSPFEFLQRGTNVQDQVQDCLLL 1140
PFDGDSITPTENPNTLVELATEEQFKSINVDPLDADEHSPFEFLQRGTNVQDQVQDCLLL
Sbjct: 1081 PFDGDSITPTENPNTLVELATEEQFKSINVDPLDADEHSPFEFLQRGTNVQDQVQDCLLL 1140
Query: 1141 QA 1142
QA
Sbjct: 1141 QA 1142
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 73.9 bits (180), Expect = 8e-13
Identities = 104/381 (27%), Positives = 127/381 (33%), Gaps = 65/381 (17%)
Query: 95 PQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSH--NQPQPEEE 152
PQ PP+ P K P Q NQ Q PP +P P N+PQ
Sbjct: 47 PQGPPSP--PGKPQGPP----------PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP 94
Query: 153 AQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPG----YGRPPISNEEGGNPYFGYFGYHGF 208
PQ PP G+ + PP + PQ PP G G PP + G P G G
Sbjct: 95 PGKPQGPPPQGDKSRSPRSPPGK-PQGPPPQGGNQPQGPPPPPGKPQGPPPQG--GNKPQ 151
Query: 209 GGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGS--QGGND 266
G PP + Q K + P + G P + P+G QGGN
Sbjct: 152 GPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN- 210
Query: 267 TSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGP--GSQIPWRPSQPNIRENHPYPN 324
P G PG G P N + QG P G P P P + P P
Sbjct: 211 -KPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 269
Query: 325 IRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERKQVARPGNPVYHKAYP 384
N P G +P +GP + R + PG P P
Sbjct: 270 GGNKPQGPP----------PPGKP--------QGPPPQGGSKSRSSRSPPGKP----QGP 307
Query: 385 PTSRGNYPNYA--------GNPANLRRKPQGPNKHPVGTTVAPLGPKPGPVVRNEKIQNP 436
P GN P G P KPQGP P G P GP P ++ ++P
Sbjct: 308 PPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP--PPGK---PQGPPPQGGSKSRSARSP 362
Query: 437 KEKPLGPKEQIIVPTKNPTSP 457
KP GP +Q NP P
Sbjct: 363 PGKPQGPPQQ---EGNNPQGP 380
Score = 56.2 bits (134), Expect = 2e-07
Identities = 73/259 (28%), Positives = 89/259 (34%), Gaps = 47/259 (18%)
Query: 81 GLPQQFPQY--QMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKP--------NQTQS 130
G PQ P P P PPP + P+ NK KP N++QS
Sbjct: 178 GKPQGPPPQGGNQPQGPPPPPGK---PQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQS 234
Query: 131 KKPPQKRPLKQPSHNQPQPEEEAQPP---QAFPPFGNGLFPYQQPPWQIPQRLPPPGYGR 187
+ P +P P QP+ PP Q PP G G P PP PQ PP G +
Sbjct: 235 ARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG-GNKPQGPPPPGKPQGPPPQGGSK 293
Query: 188 PPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPT-ANS 246
S G P G PP Q +P+ PP + G P N
Sbjct: 294 SRSSRSPPGKPQ----------GPPP--------QGGNQPQGPPPPPGKPQGPPPQGGNK 335
Query: 247 TVTETNSTQPNPKGSQGGNDT----SPTGN-STPGLNTGNN----PPAQNGIGPLPAVNA 297
+P QGG+ + SP G P GNN PP G P
Sbjct: 336 PQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPP 395
Query: 298 SG--QGGPGSQIPWRPSQP 314
+G QG P RPS+P
Sbjct: 396 AGQPQGPPRPPQGGRPSRP 414
Score = 53.9 bits (128), Expect = 8e-07
Identities = 104/402 (25%), Positives = 127/402 (31%), Gaps = 62/402 (15%)
Query: 139 LKQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPG----YGRPPISNEE 194
L + + P A PQ PP G P PQ PP G G PP +
Sbjct: 19 LNEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKP 78
Query: 195 GGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNST 254
G P G G G PP + Q +K + P + G P +
Sbjct: 79 QGPPPQG--GNKPQGPPPPGKPQGPPPQG-DKSRSPRSPPGKPQGPPPQGGNQPQGPPPP 135
Query: 255 QPNPKG--SQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGP--GSQIPWR 310
P+G QGGN P G PG G P N + QG P G P
Sbjct: 136 PGKPQGPPPQGGN--KPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQG 193
Query: 311 PSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQ--RGPRWNFFAWER 368
P P + P P N P G G Q P + + Q R P
Sbjct: 194 PPPPPGKPQGPPPQGGNKPQG------PPPPGKPQGPPPQGDNKSQSARSP--------- 238
Query: 369 KQVARPGNPVYHKAYPPTSRGNYP--------NYAGNPANLRRKPQGPNKHPVGTTVAPL 420
PG P PP GN P G P KPQGP P G P
Sbjct: 239 -----PGKP----QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP--PPPG---KPQ 284
Query: 421 GPKPGPVVRNEKIQNPKEKPLGPKEQIIVPTKNPTSPWRNSQ---QYEVNKSNYKLPHSE 477
GP P ++ ++P KP GP Q + P P Q NK P +
Sbjct: 285 GPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 344
Query: 478 GYMPVPNFNSVDQHENSYYPRGDSRKVPNSDGQTQSQNLPKG 519
P P S + S P G + P +G N P+G
Sbjct: 345 PQGPPPQGGSKSRSARS--PPGKPQGPPQQEG-----NNPQG 379
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 63.9 bits (154), Expect = 8e-10
Identities = 155/668 (23%), Positives = 215/668 (32%), Gaps = 95/668 (14%)
Query: 78 FGNGLPQQFPQYQMP-MWPQPPPN-TWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQ 135
+ +P QF Q M P P PN + RK K Q + Q+ Q P
Sbjct: 496 YAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAEIEQEMATLQYTNPQL 555
Query: 136 KRPLKQPSHNQPQPEEEAQPPQAFPPF-GNGLFPYQQPPWQIPQ--RLPPPGYGRPPISN 192
LK Q Q E+ PP + P G FP Q P QIPQ + P P P
Sbjct: 556 LEQLKIERLAQKQVEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMA 615
Query: 193 EEGGNPYFGYFGYHGFGGR-----PPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANST 247
+ G G F G G+ PP + Q F P+ P P +
Sbjct: 616 QMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQ 675
Query: 248 VTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTG-NNPPAQNG-IGPL----PAVNASGQG 301
+ + P G QG P G+S P + G PP G IGP P + QG
Sbjct: 676 GMQRHPGPHGPLGPQG--PPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQG 733
Query: 302 GPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWY----FTGTVMGHRQNRPFYRNQQVQR 357
PG+Q P P + P+P+ G Q G +MG R Q
Sbjct: 734 PPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNP-----RGMQGPP 788
Query: 358 GPRWNFFAWERKQVARPGNPVYHKAYPPTSR-GNYPNYAGNPANLRRKPQGPNKHPVGTT 416
GPR N + + +PP G+ P P +R QGP P G+
Sbjct: 789 GPRENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGM-QGPP--PQGSM 845
Query: 417 VAPLGPKPGPVVRNEKIQNPKEKPLGPKEQIIVPTKNPTSPW-RNSQQYEVNKSNYKLPH 475
+ P GP ++ Q P + LGP Q + P P + + + S +P
Sbjct: 846 LGPPQELRGPP-GSQSQQGPPQGSLGPPPQ--GGMQGPPGPQGQQNPARGPHPSQGPIPF 902
Query: 476 SEGYMPVPNFNSVDQHENSYYPRGDSRKVPNSDGQTQSQNLP-----------KGIVLGS 524
+ P+ G +P Q +P KG S
Sbjct: 903 QQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKG---DS 959
Query: 525 RRMPYESETNQSELKHS-SYQPAVYPEEIPSPAKEHFPAGRNTWDHQEISPPFKEDPGRQ 583
R P SE +H S P PE P + R D + P F +D R
Sbjct: 960 RGPPNHHMGPMSERRHEQSGGPEHGPERGPFRGGQDC---RGPPDRRGPHPDFPDDFSRP 1016
Query: 584 EEHLPHPSHGSR----------------------GSVFYPEYNPYDPRENSPYLRG--NT 619
++ P G R G F P++ + + RG
Sbjct: 1017 DDFHPDKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSEGDGRGAARGPPGA 1076
Query: 620 WDER----------DDSPNTMGQKESPLYPINTPDQKEIVPYNEEDPVDPTGDEVFPGQN 669
W+ R + P G++E + P E P G + FPG
Sbjct: 1077 WEGRRPGDERFPRDPEDPRFRGRREESF--------RRGAPPRHEGRAPPRGRDGFPGPE 1128
Query: 670 RWGEELSF 677
+G E +F
Sbjct: 1129 DFGPEENF 1136
Score = 36.6 bits (83), Expect = 0.14
Identities = 83/367 (22%), Positives = 114/367 (31%), Gaps = 91/367 (24%)
Query: 66 MNGPHMAHLGPFFGNGLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKP 125
M GPH G G+G PQ+ Q Q PP + + QE + P
Sbjct: 810 MRGPHPP--GGLLGHG-PQEMRGPQEIRGMQGPP-----------PQGSMLGPPQELRGP 855
Query: 126 NQTQSKKPPQKRPLKQPSHN----QPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLP 181
+QS++ P + L P P P+ + P + P G P+QQ Q+ P
Sbjct: 856 PGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHP-SQGPIPFQQ------QKTP 908
Query: 182 PPGYGRPPISNEEGGN----PYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAES 237
G G N+EG + P G G GR P + P K +S
Sbjct: 909 LLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIP---------PLNPGQGPGPNKGDS 959
Query: 238 PGTEPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGI-------- 289
G ++E Q GG + P G PP + G
Sbjct: 960 RGPPNHHMGPMSERRHEQ------SGGPEHGPERGPFRGGQDCRGPPDRRGPHPDFPDDF 1013
Query: 290 -----------------------GPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYPNIR 326
GPLP +GGPG P+ P E R
Sbjct: 1014 SRPDDFHPDKRFGHRLREFEGRGGPLPQEEKWRRGGPGP--PFPPDHREFSEGDGRGAAR 1071
Query: 327 NFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERKQVARPGNPVYHKA-YPP 385
P G G R +++ R P F R++ R G P H+ PP
Sbjct: 1072 GPP--------GAWEGRRPG-----DERFPRDPEDPRFRGRREESFRRGAPPRHEGRAPP 1118
Query: 386 TSRGNYP 392
R +P
Sbjct: 1119 RGRDGFP 1125
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 61.2 bits (147), Expect = 5e-09
Identities = 71/241 (29%), Positives = 86/241 (35%), Gaps = 52/241 (21%)
Query: 125 PNQTQSKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPG 184
P+Q Q + PPQ+ P +QP +QP P QP Q QQPP PP
Sbjct: 65 PHQQQQQPPPQQPPPQQPPPHQPPP--HPQPHQ-----------QQQPP------PPPQD 105
Query: 185 YGRPPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTA 244
+P ++ G P G G PP S P P PG PT
Sbjct: 106 SSKPVVAQGPGPAP--------GVGSAPPASS----SAPPATPPTSGAPPGSGPGPTPTP 153
Query: 245 NSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGP- 303
VT P P G T+P P P A G GP P G GGP
Sbjct: 154 PPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP----PPPPAAVPGPGPGPK-QGPGPGGPK 208
Query: 304 GSQIPWRPSQ---PNIRE--NHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRG 358
G ++P P P + HP P R G G RQ+ P Y +QQ +G
Sbjct: 209 GGKMPGGPKPGGGPGLSTPGGHPKPPHRG---------GGEPRGGRQHHPPY-HQQHHQG 258
Query: 359 P 359
P
Sbjct: 259 P 259
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 60.1 bits (144), Expect = 1e-08
Identities = 71/280 (25%), Positives = 103/280 (36%), Gaps = 64/280 (22%)
Query: 76 PFFGNGLPQQFPQYQMPMWPQPPPN-TWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPP 134
P++ P PQ Q P + Q PP+ T H + S + ++ Q Q +Q P Q +PP
Sbjct: 469 PYYNQQSPH--PQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPP 526
Query: 135 ---------------QKRPLKQPSHNQPQ---PEEEAQPPQAFPPFGNGLFPYQQPPWQ- 175
Q+ P QP ++QPQ P ++ QP Q P + Y QP Q
Sbjct: 527 HQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQ 586
Query: 176 ------IPQRLPPP-----------GYGRPPISNEEGGNPYFGYFGYHGFGGRPPYYSEE 218
QR PPP P +++ +GG RP
Sbjct: 587 SQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNL----SLQSRPSSL--- 639
Query: 219 MFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLN 278
D ++ P E + + S ++ + Q NP S TSP PG+
Sbjct: 640 ---PDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSP---HLPGIR 693
Query: 279 TGNNPP-------AQNGIGPLPAVNASGQGGPGSQIPWRP 311
+ P AQ+ GPL S PG+Q+P RP
Sbjct: 694 GPSPSPVGSPASVAQSRSGPL-----SPAAVPGNQMPPRP 728
Score = 57.0 bits (136), Expect = 1e-07
Identities = 138/593 (23%), Positives = 200/593 (33%), Gaps = 95/593 (16%)
Query: 167 FPYQQPPWQIPQRL----PPPGYGRPPISNEEGGNPYFGYFGYHGFGGRPP-------YY 215
FP Q P R P P Y +S+ GG P G G +PP
Sbjct: 207 FPNHQYNSYYPNRSAYPPPAPAYA---LSSPRGGTPGSGAAA--AAGSKPPPSSSASASS 261
Query: 216 SEEMFEQDFEKPKEEDPPKAESPGT-EPTANSTVTETNSTQPNPKGSQG--GNDTSPTGN 272
S F Q P A GT +PTA T+ + ++ + +G QG G D S G
Sbjct: 262 SSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSG-GP 320
Query: 273 STPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQ-----IPWRPS------QPNIRENHP 321
G G A G A A+ G+Q P P QP R P
Sbjct: 321 QDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQP 380
Query: 322 YPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERKQVARPGNPVYHK 381
+ R + GT P+ + Q GP+ PG P +
Sbjct: 381 SSPMDQMGKMRPQPYGGT-------NPYSQQQGPPSGPQQGH--------GYPGQPYGSQ 425
Query: 382 A---YPPTSRGNYPNYAGNPANLRRKP----QGPNKH-PVGTTVAPLGPKPGPVVRNEKI 433
YP T +G + G + ++ P QGP+ + G T P P +
Sbjct: 426 TPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPY 485
Query: 434 --QNPKEKPLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYMPVPNFNSV-DQ 490
Q P + P P P P S Q ++ + PH + P P+ S Q
Sbjct: 486 SQQPPSQTPHAQPSYQQQPQSQP--PQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQ 543
Query: 491 HENSYYPRGDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKHSSYQPAVYPE 550
H S P S+ S Q Q P L + + ++ QS+ S Q P+
Sbjct: 544 HPQSQPPY--SQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQ 601
Query: 551 EIP----------SPAKEHFPAGRNTWDHQEISPPFK-EDPGRQEEHLPHPSHG------ 593
E+ +P+ G+ + S P D + LP + G
Sbjct: 602 ELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGV 661
Query: 594 -------SRGSVFYPEYNPYDPRENSPYLRGNTWDERDDSPNTMGQKESPLYPINTPDQK 646
S+G P +P+ P SP+L G R SP+ +G S + P
Sbjct: 662 STSGISSSQGEQSNPAQSPFSPH-TSPHLPGI----RGPSPSPVGSPASVAQSRSGPLSP 716
Query: 647 EIVPYNEEDPVDPTGDE---VFPGQNRWGEELSFKGGPTVRHYEGEQYTSNQP 696
VP N+ P P+G + P N+ ++ G R+ + QY+S QP
Sbjct: 717 AAVPGNQMPPRPPSGQSDSIMHPSMNQ--SSIAQDRGYMQRNPQMPQYSSPQP 767
Score = 53.9 bits (128), Expect = 8e-07
Identities = 65/298 (21%), Positives = 108/298 (36%), Gaps = 72/298 (24%)
Query: 67 NGPHMAH--LGPFFGNGLPQQFPQ----------------YQMPMWPQPPPNTWHPRKSS 108
+GP H G +G+ PQ++P Q+P + Q P+ + ++
Sbjct: 409 SGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYG-QQGQ 467
Query: 109 APKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGNGLFP 168
P + ++ Q+ Q P S++PP + P QPS+ Q + ++QPPQ + P
Sbjct: 468 TPYYNQQSPHPQQQQPP---YSQQPPSQTPHAQPSYQQ---QPQSQPPQ----LQSSQPP 517
Query: 169 YQQPPWQIPQRLPPPGY------------GRPPISNEEGGNPY----------------F 200
Y Q P Q P + P Y +PP S + +PY
Sbjct: 518 YSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQA 577
Query: 201 GYFGYHGFGGRPPYYSEEMF-------EQDFEKPKEEDPPKAESPGTEPTANSTVTETNS 253
Y + YS++ F + F P S G + N ++ S
Sbjct: 578 AYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPS 637
Query: 254 TQPNPKGSQGGNDTSPTGNSTPGLNTG--------NNPPAQNGIGPLPAVNASGQGGP 303
+ P+ GS G +PG++T + PAQ+ P + + G GP
Sbjct: 638 SLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGP 695
Score = 50.8 bits (120), Expect = 7e-06
Identities = 140/727 (19%), Positives = 224/727 (30%), Gaps = 127/727 (17%)
Query: 172 PPWQIPQRLPPPG------YGRPP----------ISNEEGG--NPYFGYFGYHGFGGRPP 213
PP LPPP YGR P + GG +P G GG P
Sbjct: 135 PPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEP 194
Query: 214 YYSEEMFEQDFEKPKEE----DPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTSP 269
Y + D P + P ++ P P +P+G G+ +
Sbjct: 195 YAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPA---------YALSSPRGGTPGSGAAA 245
Query: 270 TGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGP---GSQIPWRPSQPNIRENHPYPNIR 326
S P ++ + + + A G GGP G P + P + + P+
Sbjct: 246 AAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSA 305
Query: 327 NFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERKQVARPGNPVYHKAYPPT 386
G Q Y G G Q+ + W A A G + P
Sbjct: 306 R---GYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPM 362
Query: 387 SRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPLGP-------KPGPVVRNEKIQNPKEK 439
S G+ G P+ T P P +P P +
Sbjct: 363 SPGS---------------SGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGP 407
Query: 440 PLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYMPVPNFNSVDQHENSYYPRG 499
P GP++ P + S + Q+Y + G Q S Y +
Sbjct: 408 PSGPQQGHGYPGQPYGS--QTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQ 465
Query: 500 DSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKHSSYQPAVYPEEIPSPAKEH 559
N Q P PY S+ S+ H+ QP+ ++ P
Sbjct: 466 GQTPYYNQQSPHPQQQQP----------PY-SQQPPSQTPHA--QPSY--QQQPQSQPPQ 510
Query: 560 FPAGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGSRGSVFYPEYNPY-DPRENSPYLRGN 618
+ + + Q PP ++ P P+PS S PY P+ SPY
Sbjct: 511 LQSSQPPYSQQPSQPPHQQSPA------PYPSQQSTTQQHPQSQPPYSQPQAQSPY---Q 561
Query: 619 TWDERDDSPNTMGQKESPLYPINTPDQKEIVPYNEEDPVDPTGDEVFPGQNRWGEELSFK 678
+ +P+T+ Q+ + YP Q + Y+++ P E+ Q+ +G + S
Sbjct: 562 QQQPQQPAPSTLSQQAA--YPQPQSQQSQQTAYSQQR--FPPPQEL--SQDSFGSQAS-- 613
Query: 679 GGPTVRHYEGEQYTSNQPKEYLPYSLDNPSKPREDFYYSEFYPWSP------------DE 726
P++ +G Q N + P SL + S +D SP ++
Sbjct: 614 SAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQ 673
Query: 727 NFPSYNTAS------------TMPPPIESRGYYVNNAAGPEESTLFPSRNSWDHRIQAQG 774
+ P+ + S P P+ S + +GP P Q
Sbjct: 674 SNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQS 733
Query: 775 QRERRPYFNR-NIWDQATHLQKAPARPPDQKGNQPYYSNTPAGLQKNPIWHEGENLNYGM 833
P N+ +I ++Q+ P P YS+ G +P G ++ GM
Sbjct: 734 DSIMHPSMNQSSIAQDRGYMQRNP--------QMPQYSSPQPGSALSPRQPSGGQIHTGM 785
Query: 834 QITRMNS 840
+ NS
Sbjct: 786 GSYQQNS 792
Score = 50.8 bits (120), Expect = 7e-06
Identities = 71/363 (19%), Positives = 125/363 (34%), Gaps = 53/363 (14%)
Query: 128 TQSKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGR 187
+Q + PP Q H P +Q PQ +P G Q++PP G
Sbjct: 402 SQQQGPPSG---PQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQG 458
Query: 188 PPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANST 247
P ++G PY+ H +PPY + + +P + P+++ P
Sbjct: 459 PSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPP--------- 509
Query: 248 VTETNSTQP--NPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGS 305
+ S+QP + + SQ + SP + T +P +Q P Q
Sbjct: 510 --QLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQP-----PYSQPQAQSPYQQ 562
Query: 306 QIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFA 365
Q P +P+ + + YP ++ S + Y ++ Q P
Sbjct: 563 QQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSK 622
Query: 366 WERKQV-----ARPG--------------------NPVYHKAYPPTSRGNYPNYAGNPAN 400
++ + +RP +P + +S+G N A +P +
Sbjct: 623 GGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFS 682
Query: 401 LRRKP-----QGPNKHPVGTTVAPLGPKPGPV--VRNEKIQNPKEKPLGPKEQIIVPTKN 453
P +GP+ PVG+ + + GP+ Q P P G + I+ P+ N
Sbjct: 683 PHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMN 742
Query: 454 PTS 456
+S
Sbjct: 743 QSS 745
Score = 37.0 bits (84), Expect = 0.11
Identities = 79/382 (20%), Positives = 124/382 (32%), Gaps = 66/382 (17%)
Query: 66 MNGPHMAHLGPFFGN---GLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQET 122
M P+ GP GN G Q +P P + P+ + T Q
Sbjct: 1256 MGDPYSRAAGPGLGNVAMGPRQHYPY-------GGPYDRVRTEPGIGPEGNMSTGAPQPN 1308
Query: 123 QKPNQ------TQSKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQI 176
P+ + S+ PPQ++ +Q H+ + Q + PF + Q Q
Sbjct: 1309 LMPSNPDSGMYSPSRYPPQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQN 1368
Query: 177 PQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAE 236
+R YG PP EG Y PY + + Q + P + P ++
Sbjct: 1369 YKRPMDGTYG-PPAKRHEG-EMY-----------SVPYSTGQGQPQQQQLPPAQPQPASQ 1415
Query: 237 SPGTEPTANSTV----------TETNSTQPNPKGSQGGNDTSPTG----NSTPGLNTGNN 282
+P+ V T T +T+ P G G ++ PG N N
Sbjct: 1416 QQAAQPSPQQDVYNQYGNAYPATATAATERRPAGGPQNQFPFQFGRDRVSAPPGTNAQQN 1475
Query: 283 PPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMG 342
P Q GP+ A Q G W+ + + P G ++
Sbjct: 1476 MPPQMMGGPIQASAEVAQQG----TMWQGRNDMTYNYANRQSTGSAPQGPAYHGV----- 1526
Query: 343 HRQNRPFYRNQQVQRGPRWNFFAWERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPANLR 402
+R + + +Q+ W R+ P PV PP P+N +
Sbjct: 1527 NRTDEMLHTDQRANHEGSWPSHG-TRQPPYGPSAPVPPMTRPP------------PSNYQ 1573
Query: 403 RKPQGPNKHPVGTTVAPLGPKP 424
P N P ++ APL P+P
Sbjct: 1574 PPPSMQNHIPQVSSPAPL-PRP 1594
Score = 35.0 bits (79), Expect = 0.41
Identities = 77/304 (25%), Positives = 97/304 (31%), Gaps = 74/304 (24%)
Query: 48 PGFSSKSEEMMRYNQFNFMNGPHMAHLGPFFGN---------GLPQQFPQYQM-PMWPQP 97
PG S+ + Q N P H P G P Q + P+ P
Sbjct: 659 PGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAA 718
Query: 98 PP-NTWHPRKSSAPKRHNKTDQTQETQKPNQTQSK----KPPQKRPLKQPSHNQPQPEEE 152
P N PR S Q+ P+ QS + +R + P ++ PQP
Sbjct: 719 VPGNQMPPRPPSG--------QSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSA 770
Query: 153 AQPPQAFPPFGN----GLFPYQQPPW-----QIPQRLPPPGYGRPPISNE---------- 193
P Q P G G+ YQQ Q Q P GY R P N
Sbjct: 771 LSPRQ---PSGGQIHTGMGSYQQNSMGSYGPQGGQYGPQGGYPRQPNYNALPNANYPSAG 827
Query: 194 --EGGNPYFGYFGYHGFGGRPPYYS--------EEMFEQDFEKPKEEDPPKAES-----P 238
G NP HG G PPY + M + + PP+ S P
Sbjct: 828 MAGGINPMGAGGQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPP 887
Query: 239 G-----TEPTANSTVTETNSTQPNPKG----SQGG--NDTSPTG---NSTPGLNTGNNPP 284
G T+ TA + NS Q P G +QGG P G NS G+ PP
Sbjct: 888 GGMNRKTQETAVAMHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPP 947
Query: 285 AQNG 288
G
Sbjct: 948 YSMG 951
Score = 35.0 bits (79), Expect = 0.41
Identities = 43/176 (24%), Positives = 58/176 (32%), Gaps = 12/176 (6%)
Query: 32 GLLGNSVAMPMHMPRMPGFSSKSEEMMRYNQFNFMNGPHMAHLGPFFGNGLPQ--QFPQY 89
G + P MP P S Q H ++ F G P FP
Sbjct: 1298 GNMSTGAPQPNLMPSNPDSGMYSPSRYPPQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQ 1357
Query: 90 QMPMWPQPPPNTWHPRKSS---APKRHNKTDQT---QETQKPNQTQSKKPPQKRPLKQPS 143
Q M+ Q N P + KRH + Q Q Q P Q +P Q
Sbjct: 1358 QTTMYQQQQQNYKRPMDGTYGPPAKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQ 1417
Query: 144 HNQPQPEEEA--QPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGN 197
QP P+++ Q A+P ++ P PQ P +GR +S G N
Sbjct: 1418 AAQPSPQQDVYNQYGNAYP--ATATAATERRPAGGPQNQFPFQFGRDRVSAPPGTN 1471
Score = 31.2 bits (69), Expect = 5.9
Identities = 80/376 (21%), Positives = 118/376 (31%), Gaps = 93/376 (24%)
Query: 468 KSNYKLPHSEGYMPVPNFNSVD---QHENSYYPRGDSRKVPNSDGQTQSQNLPKGIVLGS 524
K N P+ GY P N + + +E + P G RK P SD S P G
Sbjct: 1201 KRNSMTPNP-GYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPN----GG 1255
Query: 525 RRMPYESETNQSELKHSSYQPAVYPEEIPSPAKEHFPAGRNTWDHQEISPPFKEDPGRQE 584
PY S L + + P ++H+P G +D P + G
Sbjct: 1256 MGDPY-SRAAGPGLGNVAMGP-----------RQHYPYG-GPYDRVRTEPGIGPE-GNMS 1301
Query: 585 EHLPHPSHGSRGSVFYPEYNPYDPRENSPYLRGNTWDERDDSPN---TMGQKESPLYPIN 641
P P+ P+ Y P P + D N T G +P
Sbjct: 1302 TGAPQPNLMPSN----PDSGMYSPSRYPPQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQ 1357
Query: 642 TPDQKEIVPYNEEDPVDPTGDEVFPGQNRWGEELSFKGGPTVRHYEGEQYT------SNQ 695
+ N + P+D T GP + +EGE Y+ Q
Sbjct: 1358 QTTMYQQQQQNYKRPMDGT------------------YGPPAKRHEGEMYSVPYSTGQGQ 1399
Query: 696 P-KEYLPYSLDNPS--------KPREDFY--YSEFYP------------WSPDENF---- 728
P ++ LP + P+ P++D Y Y YP P F
Sbjct: 1400 PQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNAYPATATAATERRPAGGPQNQFPFQF 1459
Query: 729 --------PSYNTASTMPPPIESRGYYVNNAAGPEESTLFPSRNSWDHRI---QAQGQRE 777
P N MPP + G +A ++ T++ RN + Q+ G
Sbjct: 1460 GRDRVSAPPGTNAQQNMPPQMMG-GPIQASAEVAQQGTMWQGRNDMTYNYANRQSTGSAP 1518
Query: 778 RRP-YFNRNIWDQATH 792
+ P Y N D+ H
Sbjct: 1519 QGPAYHGVNRTDEMLH 1534
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 60.1 bits (144), Expect = 1e-08
Identities = 71/280 (25%), Positives = 103/280 (36%), Gaps = 64/280 (22%)
Query: 76 PFFGNGLPQQFPQYQMPMWPQPPPN-TWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPP 134
P++ P PQ Q P + Q PP+ T H + S + ++ Q Q +Q P Q +PP
Sbjct: 469 PYYNQQSPH--PQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPP 526
Query: 135 ---------------QKRPLKQPSHNQPQ---PEEEAQPPQAFPPFGNGLFPYQQPPWQ- 175
Q+ P QP ++QPQ P ++ QP Q P + Y QP Q
Sbjct: 527 HQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQ 586
Query: 176 ------IPQRLPPP-----------GYGRPPISNEEGGNPYFGYFGYHGFGGRPPYYSEE 218
QR PPP P +++ +GG RP
Sbjct: 587 SQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNL----SLQSRPSSL--- 639
Query: 219 MFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLN 278
D ++ P E + + S ++ + Q NP S TSP PG+
Sbjct: 640 ---PDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSP---HLPGIR 693
Query: 279 TGNNPP-------AQNGIGPLPAVNASGQGGPGSQIPWRP 311
+ P AQ+ GPL S PG+Q+P RP
Sbjct: 694 GPSPSPVGSPASVAQSRSGPL-----SPAAVPGNQMPPRP 728
Score = 57.0 bits (136), Expect = 1e-07
Identities = 138/593 (23%), Positives = 200/593 (33%), Gaps = 95/593 (16%)
Query: 167 FPYQQPPWQIPQRL----PPPGYGRPPISNEEGGNPYFGYFGYHGFGGRPP-------YY 215
FP Q P R P P Y +S+ GG P G G +PP
Sbjct: 207 FPNHQYNSYYPNRSAYPPPAPAYA---LSSPRGGTPGSGAAA--AAGSKPPPSSSASASS 261
Query: 216 SEEMFEQDFEKPKEEDPPKAESPGT-EPTANSTVTETNSTQPNPKGSQG--GNDTSPTGN 272
S F Q P A GT +PTA T+ + ++ + +G QG G D S G
Sbjct: 262 SSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSG-GP 320
Query: 273 STPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQ-----IPWRPS------QPNIRENHP 321
G G A G A A+ G+Q P P QP R P
Sbjct: 321 QDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQP 380
Query: 322 YPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERKQVARPGNPVYHK 381
+ R + GT P+ + Q GP+ PG P +
Sbjct: 381 SSPMDQMGKMRPQPYGGT-------NPYSQQQGPPSGPQQGH--------GYPGQPYGSQ 425
Query: 382 A---YPPTSRGNYPNYAGNPANLRRKP----QGPNKH-PVGTTVAPLGPKPGPVVRNEKI 433
YP T +G + G + ++ P QGP+ + G T P P +
Sbjct: 426 TPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPY 485
Query: 434 --QNPKEKPLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYMPVPNFNSV-DQ 490
Q P + P P P P S Q ++ + PH + P P+ S Q
Sbjct: 486 SQQPPSQTPHAQPSYQQQPQSQP--PQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQ 543
Query: 491 HENSYYPRGDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKHSSYQPAVYPE 550
H S P S+ S Q Q P L + + ++ QS+ S Q P+
Sbjct: 544 HPQSQPPY--SQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQ 601
Query: 551 EIP----------SPAKEHFPAGRNTWDHQEISPPFK-EDPGRQEEHLPHPSHG------ 593
E+ +P+ G+ + S P D + LP + G
Sbjct: 602 ELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGV 661
Query: 594 -------SRGSVFYPEYNPYDPRENSPYLRGNTWDERDDSPNTMGQKESPLYPINTPDQK 646
S+G P +P+ P SP+L G R SP+ +G S + P
Sbjct: 662 STSGISSSQGEQSNPAQSPFSPH-TSPHLPGI----RGPSPSPVGSPASVAQSRSGPLSP 716
Query: 647 EIVPYNEEDPVDPTGDE---VFPGQNRWGEELSFKGGPTVRHYEGEQYTSNQP 696
VP N+ P P+G + P N+ ++ G R+ + QY+S QP
Sbjct: 717 AAVPGNQMPPRPPSGQSDSIMHPSMNQ--SSIAQDRGYMQRNPQMPQYSSPQP 767
Score = 53.9 bits (128), Expect = 8e-07
Identities = 65/298 (21%), Positives = 108/298 (36%), Gaps = 72/298 (24%)
Query: 67 NGPHMAH--LGPFFGNGLPQQFPQ----------------YQMPMWPQPPPNTWHPRKSS 108
+GP H G +G+ PQ++P Q+P + Q P+ + ++
Sbjct: 409 SGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYG-QQGQ 467
Query: 109 APKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGNGLFP 168
P + ++ Q+ Q P S++PP + P QPS+ Q + ++QPPQ + P
Sbjct: 468 TPYYNQQSPHPQQQQPP---YSQQPPSQTPHAQPSYQQ---QPQSQPPQ----LQSSQPP 517
Query: 169 YQQPPWQIPQRLPPPGY------------GRPPISNEEGGNPY----------------F 200
Y Q P Q P + P Y +PP S + +PY
Sbjct: 518 YSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQA 577
Query: 201 GYFGYHGFGGRPPYYSEEMF-------EQDFEKPKEEDPPKAESPGTEPTANSTVTETNS 253
Y + YS++ F + F P S G + N ++ S
Sbjct: 578 AYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPS 637
Query: 254 TQPNPKGSQGGNDTSPTGNSTPGLNTG--------NNPPAQNGIGPLPAVNASGQGGP 303
+ P+ GS G +PG++T + PAQ+ P + + G GP
Sbjct: 638 SLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGP 695
Score = 50.8 bits (120), Expect = 7e-06
Identities = 140/727 (19%), Positives = 224/727 (30%), Gaps = 127/727 (17%)
Query: 172 PPWQIPQRLPPPG------YGRPP----------ISNEEGG--NPYFGYFGYHGFGGRPP 213
PP LPPP YGR P + GG +P G GG P
Sbjct: 135 PPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEP 194
Query: 214 YYSEEMFEQDFEKPKEE----DPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTSP 269
Y + D P + P ++ P P +P+G G+ +
Sbjct: 195 YAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPA---------YALSSPRGGTPGSGAAA 245
Query: 270 TGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGP---GSQIPWRPSQPNIRENHPYPNIR 326
S P ++ + + + A G GGP G P + P + + P+
Sbjct: 246 AAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSA 305
Query: 327 NFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERKQVARPGNPVYHKAYPPT 386
G Q Y G G Q+ + W A A G + P
Sbjct: 306 R---GYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPM 362
Query: 387 SRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPLGP-------KPGPVVRNEKIQNPKEK 439
S G+ G P+ T P P +P P +
Sbjct: 363 SPGS---------------SGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGP 407
Query: 440 PLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYMPVPNFNSVDQHENSYYPRG 499
P GP++ P + S + Q+Y + G Q S Y +
Sbjct: 408 PSGPQQGHGYPGQPYGS--QTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQ 465
Query: 500 DSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKHSSYQPAVYPEEIPSPAKEH 559
N Q P PY S+ S+ H+ QP+ ++ P
Sbjct: 466 GQTPYYNQQSPHPQQQQP----------PY-SQQPPSQTPHA--QPSY--QQQPQSQPPQ 510
Query: 560 FPAGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGSRGSVFYPEYNPY-DPRENSPYLRGN 618
+ + + Q PP ++ P P+PS S PY P+ SPY
Sbjct: 511 LQSSQPPYSQQPSQPPHQQSPA------PYPSQQSTTQQHPQSQPPYSQPQAQSPY---Q 561
Query: 619 TWDERDDSPNTMGQKESPLYPINTPDQKEIVPYNEEDPVDPTGDEVFPGQNRWGEELSFK 678
+ +P+T+ Q+ + YP Q + Y+++ P E+ Q+ +G + S
Sbjct: 562 QQQPQQPAPSTLSQQAA--YPQPQSQQSQQTAYSQQR--FPPPQEL--SQDSFGSQAS-- 613
Query: 679 GGPTVRHYEGEQYTSNQPKEYLPYSLDNPSKPREDFYYSEFYPWSP------------DE 726
P++ +G Q N + P SL + S +D SP ++
Sbjct: 614 SAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQ 673
Query: 727 NFPSYNTAS------------TMPPPIESRGYYVNNAAGPEESTLFPSRNSWDHRIQAQG 774
+ P+ + S P P+ S + +GP P Q
Sbjct: 674 SNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQS 733
Query: 775 QRERRPYFNR-NIWDQATHLQKAPARPPDQKGNQPYYSNTPAGLQKNPIWHEGENLNYGM 833
P N+ +I ++Q+ P P YS+ G +P G ++ GM
Sbjct: 734 DSIMHPSMNQSSIAQDRGYMQRNP--------QMPQYSSPQPGSALSPRQPSGGQIHTGM 785
Query: 834 QITRMNS 840
+ NS
Sbjct: 786 GSYQQNS 792
Score = 50.8 bits (120), Expect = 7e-06
Identities = 71/363 (19%), Positives = 125/363 (34%), Gaps = 53/363 (14%)
Query: 128 TQSKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGR 187
+Q + PP Q H P +Q PQ +P G Q++PP G
Sbjct: 402 SQQQGPPSG---PQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQG 458
Query: 188 PPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANST 247
P ++G PY+ H +PPY + + +P + P+++ P
Sbjct: 459 PSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPP--------- 509
Query: 248 VTETNSTQP--NPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGS 305
+ S+QP + + SQ + SP + T +P +Q P Q
Sbjct: 510 --QLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQP-----PYSQPQAQSPYQQ 562
Query: 306 QIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFA 365
Q P +P+ + + YP ++ S + Y ++ Q P
Sbjct: 563 QQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSK 622
Query: 366 WERKQV-----ARPG--------------------NPVYHKAYPPTSRGNYPNYAGNPAN 400
++ + +RP +P + +S+G N A +P +
Sbjct: 623 GGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFS 682
Query: 401 LRRKP-----QGPNKHPVGTTVAPLGPKPGPV--VRNEKIQNPKEKPLGPKEQIIVPTKN 453
P +GP+ PVG+ + + GP+ Q P P G + I+ P+ N
Sbjct: 683 PHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMN 742
Query: 454 PTS 456
+S
Sbjct: 743 QSS 745
Score = 35.0 bits (79), Expect = 0.41
Identities = 77/304 (25%), Positives = 97/304 (31%), Gaps = 74/304 (24%)
Query: 48 PGFSSKSEEMMRYNQFNFMNGPHMAHLGPFFGN---------GLPQQFPQYQM-PMWPQP 97
PG S+ + Q N P H P G P Q + P+ P
Sbjct: 659 PGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAA 718
Query: 98 PP-NTWHPRKSSAPKRHNKTDQTQETQKPNQTQSK----KPPQKRPLKQPSHNQPQPEEE 152
P N PR S Q+ P+ QS + +R + P ++ PQP
Sbjct: 719 VPGNQMPPRPPSG--------QSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSA 770
Query: 153 AQPPQAFPPFGN----GLFPYQQPPW-----QIPQRLPPPGYGRPPISNE---------- 193
P Q P G G+ YQQ Q Q P GY R P N
Sbjct: 771 LSPRQ---PSGGQIHTGMGSYQQNSMGSYGPQGGQYGPQGGYPRQPNYNALPNANYPSAG 827
Query: 194 --EGGNPYFGYFGYHGFGGRPPYYS--------EEMFEQDFEKPKEEDPPKAES-----P 238
G NP HG G PPY + M + + PP+ S P
Sbjct: 828 MAGGINPMGAGGQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPP 887
Query: 239 G-----TEPTANSTVTETNSTQPNPKG----SQGG--NDTSPTG---NSTPGLNTGNNPP 284
G T+ TA + NS Q P G +QGG P G NS G+ PP
Sbjct: 888 GGMNRKTQETAVAMHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPP 947
Query: 285 AQNG 288
G
Sbjct: 948 YSMG 951
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo
sapiens]
Length = 2231
Score = 59.7 bits (143), Expect = 2e-08
Identities = 128/597 (21%), Positives = 203/597 (34%), Gaps = 109/597 (18%)
Query: 138 PLKQPSHNQPQPEEEAQPP--QAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISN--E 193
P QP + P P PP Q +P G P Q PQ+ PP YG+ +S +
Sbjct: 477 PHSQPQQSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQ 536
Query: 194 EGGNPYFGY---------------------------FGYHGFGGR--PPYYSEEMFEQDF 224
+G PY+ G+G R PP + +D
Sbjct: 537 QGQQPYYSQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDL 596
Query: 225 EKPKEEDPPKAES---------PGTEPTANSTVTETNSTQPNPKGSQGGNDTSP-TGNST 274
++E P GTE T +S V+ + ST + +G Q SP + +++
Sbjct: 597 NLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGST--SSQGDQSNPAQSPFSPHAS 654
Query: 275 PGLNTGNNPPAQNGIGPLPAVNASGQGG------PGSQIPWRPSQPNIRENHPYPNIRNF 328
P L++ P+ + +G N S G PGSQ+P +P E+ +P +
Sbjct: 655 PHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQ-SESSSHPALSQS 713
Query: 329 PSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERKQVARPGNPVYHKAYPPTSR 388
P ++ G + G ++N + Q GP PG + H +
Sbjct: 714 PMPQE---RGFMAGTQRNPQMAQYGPQQTGP-------SMSPHPSPGGQM-HAGISSFQQ 762
Query: 389 GNYPNYAGNPANLRRKPQGPNKHPVGTTVAPLGPKPGPVVRNEKIQNPKEKPLGPKEQI- 447
N G P + PQG P + P GP N + GP +
Sbjct: 763 SNSSGTYG-PQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCG 821
Query: 448 IVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYM---------PVPNFNSVDQHENSYYPR 498
VP S ++ + N S+ P S G P+P N Q + +
Sbjct: 822 AVPLGRMPSAGMQNRPFPGNMSS-MTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQ 880
Query: 499 GDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKHSSYQP--AVYPEEIPSPA 556
+ + G N G++ S PY N S ++ P ++ P + S A
Sbjct: 881 AAANSAQSRQGSFPGMN-QSGLMASS--SPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSA 937
Query: 557 KEHFPAGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGSRGSVF------------YPEYN 604
A + ++ P K D +EE P P S+ S P +
Sbjct: 938 ASVGLADMMSPGESKLPLPLKAD--GKEEGTPQPESKSKDSYSSQGISQPPTPGNLPVPS 995
Query: 605 PYDPR---------ENSPYLRGNTWDERDDSP-----NTMGQKESPLYPI-NTPDQK 646
P P + S + W + SP T G+K + +Y + N P++K
Sbjct: 996 PMSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVYELGNEPERK 1052
Score = 38.9 bits (89), Expect = 0.028
Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 32/253 (12%)
Query: 630 MGQKESPLYPINTPDQKEIVPYNEEDPVD--PTGDE--------VFPGQNRWGEELSFKG 679
MGQ++ +P + PY ++ P P+G ++P Q + +
Sbjct: 1305 MGQRQQ--FPYGASYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGLYPQQPNYKRHMDGMY 1362
Query: 680 GPTVRHYEGE----QYTSNQPKEYLPYSLDNPSKPREDFYYSEFYPWSPDE-NFPSYNTA 734
GP + +EG+ QY+S Q + Y Y R YP+S + P
Sbjct: 1363 GPPAKRHEGDMYNMQYSSQQQEMYNQYGGSYSGPDRRPIQGQYPYPYSRERMQGPGQIQT 1422
Query: 735 STMPPPIESRGYYVNNAAGPEESTLFPSRNSWDHRIQAQ----GQRERRPYFNRNIWDQA 790
+PP + +++ GP+++ ++ +RN + Q + G + PY N D
Sbjct: 1423 HGIPPQMMGGPLQSSSSEGPQQN-MWAARNDMPYPYQNRQGPGGPTQAPPYPGMNRTDDM 1481
Query: 791 ----THLQKAPARPPDQKGNQPYYSNT----PAGLQKNPIWHEGENLNYGMQITRMNSPE 842
+ P QPY S++ P P + +L I+R SP
Sbjct: 1482 MVPDQRINHESQWPSHVSQRQPYMSSSASMQPITRPPQPSYQTPPSL--PNHISRAPSPA 1539
Query: 843 REHSSFPNFIPPS 855
S N + PS
Sbjct: 1540 SFQRSLENRMSPS 1552
Score = 38.1 bits (87), Expect = 0.048
Identities = 53/252 (21%), Positives = 80/252 (31%), Gaps = 51/252 (20%)
Query: 95 PQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQPQPEEEAQ 154
P PP+ H A H+ Q ++ Q++ +Q Q Q +
Sbjct: 18 PAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPIS 77
Query: 155 PPQAFPPFGNGLFPYQQPPWQIPQ-----------RLPPPGYGRPPISNEEG-------- 195
+ G G P P + PQ + PPG PP+ ++ G
Sbjct: 78 NNNSLGGAGGGA-PQPGPDMEQPQHGGAKDSAAGGQADPPG---PPLLSKPGDEDDAPPK 133
Query: 196 -GNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNST 254
G P G + + G G ++P P P P N+
Sbjct: 134 MGEPAGGRYEHPGLGALGT-----------QQPPVAVPGGGGGPAAVPEFNNYYGSAAPA 182
Query: 255 QPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQ- 313
P G G G +PG+ G + + +A+ G PGS P + S
Sbjct: 183 SGGPGGRAGPCFDQHGGQQSPGM------------GMMHSASAAAAGAPGSMDPLQNSHE 230
Query: 314 --PNIRENHPYP 323
PN + NH YP
Sbjct: 231 GYPNSQCNH-YP 241
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 58.2 bits (139), Expect = 4e-08
Identities = 114/521 (21%), Positives = 179/521 (34%), Gaps = 82/521 (15%)
Query: 138 PLKQPSHNQPQPEEEAQPP--QAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISN--E 193
P QP + P P PP Q +P G P Q PQ+ PP YG+ +S +
Sbjct: 477 PHSQPQQSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQ 536
Query: 194 EGGNPYFGY---------------------------FGYHGFGGR--PPYYSEEMFEQDF 224
+G PY+ G+G R PP + +D
Sbjct: 537 QGQQPYYSQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDL 596
Query: 225 EKPKEEDPPKAES---------PGTEPTANSTVTETNSTQPNPKGSQGGNDTSP-TGNST 274
++E P GTE T +S V+ + ST + +G Q SP + +++
Sbjct: 597 NLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGST--SSQGDQSNPAQSPFSPHAS 654
Query: 275 PGLNTGNNPPAQNGIGPLPAVNASGQGG------PGSQIPWRPSQPNIRENHPYPNIRNF 328
P L++ P+ + +G N S G PGSQ+P +P E+ +P +
Sbjct: 655 PHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQ-SESSSHPALSQS 713
Query: 329 PSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERKQVARPGNPVYHKAYPPTSR 388
P ++ G + G ++N + Q GP PG + H +
Sbjct: 714 PMPQE---RGFMAGTQRNPQMAQYGPQQTGP-------SMSPHPSPGGQM-HAGISSFQQ 762
Query: 389 GNYPNYAGNPANLRRKPQGPNKHPVGTTVAPLGPKPGPVVRNEKIQNPKEKPLGPKEQI- 447
N G P + PQG P + P GP N + GP +
Sbjct: 763 SNSSGTYG-PQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCG 821
Query: 448 IVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYM---------PVPNFNSVDQHENSYYPR 498
VP S ++ + N S+ P S G P+P N Q + +
Sbjct: 822 AVPLGRMPSAGMQNRPFPGNMSS-MTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQ 880
Query: 499 GDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKHSSYQP--AVYPEEIPSPA 556
+ + G N G++ S PY N S ++ P ++ P + S A
Sbjct: 881 AAANSAQSRQGSFPGMN-QSGLMASS--SPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSA 937
Query: 557 KEHFPAGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGSRGS 597
A + ++ P K D +EE P P S+ S
Sbjct: 938 ASVGLADMMSPGESKLPLPLKAD--GKEEGTPQPESKSKKS 976
Score = 38.9 bits (89), Expect = 0.028
Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 32/253 (12%)
Query: 630 MGQKESPLYPINTPDQKEIVPYNEEDPVD--PTGDE--------VFPGQNRWGEELSFKG 679
MGQ++ +P + PY ++ P P+G ++P Q + +
Sbjct: 1252 MGQRQQ--FPYGASYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGLYPQQPNYKRHMDGMY 1309
Query: 680 GPTVRHYEGE----QYTSNQPKEYLPYSLDNPSKPREDFYYSEFYPWSPDE-NFPSYNTA 734
GP + +EG+ QY+S Q + Y Y R YP+S + P
Sbjct: 1310 GPPAKRHEGDMYNMQYSSQQQEMYNQYGGSYSGPDRRPIQGQYPYPYSRERMQGPGQIQT 1369
Query: 735 STMPPPIESRGYYVNNAAGPEESTLFPSRNSWDHRIQAQ----GQRERRPYFNRNIWDQA 790
+PP + +++ GP+++ ++ +RN + Q + G + PY N D
Sbjct: 1370 HGIPPQMMGGPLQSSSSEGPQQN-MWAARNDMPYPYQNRQGPGGPTQAPPYPGMNRTDDM 1428
Query: 791 ----THLQKAPARPPDQKGNQPYYSNT----PAGLQKNPIWHEGENLNYGMQITRMNSPE 842
+ P QPY S++ P P + +L I+R SP
Sbjct: 1429 MVPDQRINHESQWPSHVSQRQPYMSSSASMQPITRPPQPSYQTPPSL--PNHISRAPSPA 1486
Query: 843 REHSSFPNFIPPS 855
S N + PS
Sbjct: 1487 SFQRSLENRMSPS 1499
Score = 38.1 bits (87), Expect = 0.048
Identities = 53/252 (21%), Positives = 80/252 (31%), Gaps = 51/252 (20%)
Query: 95 PQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQPQPEEEAQ 154
P PP+ H A H+ Q ++ Q++ +Q Q Q +
Sbjct: 18 PAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPIS 77
Query: 155 PPQAFPPFGNGLFPYQQPPWQIPQ-----------RLPPPGYGRPPISNEEG-------- 195
+ G G P P + PQ + PPG PP+ ++ G
Sbjct: 78 NNNSLGGAGGGA-PQPGPDMEQPQHGGAKDSAAGGQADPPG---PPLLSKPGDEDDAPPK 133
Query: 196 -GNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNST 254
G P G + + G G ++P P P P N+
Sbjct: 134 MGEPAGGRYEHPGLGALGT-----------QQPPVAVPGGGGGPAAVPEFNNYYGSAAPA 182
Query: 255 QPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQ- 313
P G G G +PG+ G + + +A+ G PGS P + S
Sbjct: 183 SGGPGGRAGPCFDQHGGQQSPGM------------GMMHSASAAAAGAPGSMDPLQNSHE 230
Query: 314 --PNIRENHPYP 323
PN + NH YP
Sbjct: 231 GYPNSQCNH-YP 241
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 57.8 bits (138), Expect = 6e-08
Identities = 95/414 (22%), Positives = 134/414 (32%), Gaps = 66/414 (15%)
Query: 87 PQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQT-------QSKKPP----- 134
PQ P+PP P PK K D T++P Q PP
Sbjct: 591 PQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRFQRQ 650
Query: 135 -QKRPLKQPSHNQPQPEEEAQ------PPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGR 187
Q++ LKQ +Q Q ++ PP P G P Q P P+ L P GR
Sbjct: 651 QQEQLLKQQQQHQWQQHQQGSAPPTPVPPSPPQPVTLGAVPAPQAPPPPPKALYPGALGR 710
Query: 188 PPISNEEGGNPYF----GYFGYHGFGGRPP--YYSEEMFEQDFEKPKEEDPPKAESPGTE 241
PP +P + Y GRPP +Y + + D + S +
Sbjct: 711 PPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFD 770
Query: 242 PTANSTVTETNSTQPNPKGSQGGND-----------TSPTGNSTPGLNTGNN------PP 284
A + + E + +PK + G+ TSP + + G PP
Sbjct: 771 RHAPAMLRERGTPPVDPKLAWVGDVFTATPAEPRPLTSPLRQAADEDDKGMRSETPPVPP 830
Query: 285 AQNGIGPLPAVNASGQGGP-----------GSQIPWRPSQPNIRENHPYPNIRNFPSGRQ 333
+ P +G GP +PW P + + P + P
Sbjct: 831 PPPYLASYPGFPENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEPPKEET 890
Query: 334 WYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERKQVARPGNPVYHKAYPPTSRGNYPN 393
TG G + R Q PR E + RPG+ + PP G P
Sbjct: 891 AQLTGPEAGRKPARGVGSGGQGPPPPR-RESRTETRWGPRPGSS--RRGIPPEEPGAPPR 947
Query: 394 YAG------NPANLRRKPQGPNKHPVGTTVAPLGPKPGPV-VRNEKIQNPKEKP 440
AG P + P P + T P PKP P+ + K+ PKE P
Sbjct: 948 RAGPIKKPPPPTKVEELPPKPLEQGDET---PKPPKPDPLKITKGKLGGPKETP 998
Score = 38.5 bits (88), Expect = 0.037
Identities = 87/388 (22%), Positives = 121/388 (31%), Gaps = 80/388 (20%)
Query: 92 PMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQPQPEE 151
P P +T P ++AP + T T + S PQ PS P+P E
Sbjct: 549 PAQAPPAQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQL-----PSKEGPEPPE 603
Query: 152 EAQPPQAFP-----PFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGYH 206
E PP P P G+G+ P +QPP Q G G P
Sbjct: 604 EVPPPTTPPVPKVEPKGDGIGPTRQPPSQ--------GLGYPKYQK-------------- 641
Query: 207 GFGGRPPYYSEEMFEQDFEKPKEED---------PPKAESPG-TEPTANSTVTETNSTQP 256
PP + + EQ ++ ++ PP P +P V + P
Sbjct: 642 ---SLPPRFQRQQQEQLLKQQQQHQWQQHQQGSAPPTPVPPSPPQPVTLGAVPAPQAPPP 698
Query: 257 NPK----GSQGGNDTSPTGNSTPG---LNTGNNPPAQNGIGPL----PAVNASG------ 299
PK G+ G P N P + +P G PL P V+ SG
Sbjct: 699 PPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRER 758
Query: 300 -QGGPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRG 358
G S P+ P + P P + + G V P +++
Sbjct: 759 SDSGGSSSEPFDRHAPAMLRERGTP-----PVDPKLAWVGDVFTATPAEPRPLTSPLRQA 813
Query: 359 PRWNFFAWERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVA 418
+ + P P Y +YP G N A P R + P P+
Sbjct: 814 ADEDDKGMRSETPPVPPPPPYLASYP----GFPENGAPGPPISRFPLEEPGPRPL----- 864
Query: 419 PLGPKPGPVVRNEKIQNPKEKPLGPKEQ 446
P P KIQ P K PKE+
Sbjct: 865 ---PWPPGSDEVAKIQTPPPKKEPPKEE 889
Score = 37.0 bits (84), Expect = 0.11
Identities = 49/211 (23%), Positives = 65/211 (30%), Gaps = 40/211 (18%)
Query: 144 HNQPQPEEEAQP--PQAFPPFGNGLFPYQQPPW---------QIPQRLPPP--------- 183
H+ P QP P FPP+ + P+ PP+ Q P R P P
Sbjct: 226 HHGHDPRGGLQPSGPPQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPTPDGPSRFPRV 285
Query: 184 ----GYGRPPISNEEGGNP---------YFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEE 230
G G P E G P F G + E + + + EE
Sbjct: 286 AGPRGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEE 345
Query: 231 DPPKAESPGTEPTANSTVTETNSTQPNPKGSQGG--NDTSPT-----GNSTPGLNTGNNP 283
D ++ G E +S P G +G N PT ++ T P
Sbjct: 346 DGRDSDEEGAEGHRDSQSASGEERPPEADGKKGNSPNSEPPTPKTAWAETSRPPETEPGP 405
Query: 284 PAQNGIGPLPAVNASGQGGPGSQIPWRPSQP 314
PA P P +G GP P R P
Sbjct: 406 PAPKPPLPPPHRGPAGNWGPPGDYPDRGGPP 436
Score = 31.6 bits (70), Expect = 4.5
Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 27/142 (19%)
Query: 167 FPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFGGRP-PYYSEEMF---EQ 222
F Q+P + R P PG + GG G G GGR P ++ +
Sbjct: 1385 FSSQRPGMERQNRRPGPGGKAGSSGSSSGG-------GGGGPGGRTGPGRGDKRSWPSPK 1437
Query: 223 DFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKG---------SQGGNDTSPTGN- 272
+ +P EE PP P P++++ NP G S+ G+ T+P G+
Sbjct: 1438 NRSRPPEERPPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAPGGHP 1497
Query: 273 -STPGLNTGNNPPAQNGIGPLP 293
PGL P A G P P
Sbjct: 1498 RHKPGL-----PQAPQGPSPRP 1514
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 53.1 bits (126), Expect = 1e-06
Identities = 86/339 (25%), Positives = 104/339 (30%), Gaps = 67/339 (19%)
Query: 92 PMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQPQPEE 151
P P PPP + P+ NK KP + + P P Q P +
Sbjct: 47 PQGPPPPPGK---PQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQ 103
Query: 152 EAQPPQAFPPFGNGLFPYQQPP--WQIPQRLPPPGYGR-PPISNEEGGNPYFGYFGYHGF 208
PQ PP P PP PQ PPPG + PP ++ +P
Sbjct: 104 GGNQPQGPPPPPGK--PQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSP---------- 151
Query: 209 GGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTS 268
PP + Q +P+ PP + G P + P+G D S
Sbjct: 152 -RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKK-PQGPPPPGKPQGPPPQGDKS 209
Query: 269 PTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYPNIRNF 328
+ S PG G PP Q G P QG P P + P P N
Sbjct: 210 RSSQSPPGKPQG--PPPQGGNQP--------QG---------PPPPPGKPQGPPPQGGNK 250
Query: 329 PSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERKQVAR--PGNPVYHKAYPPT 386
P G G Q P Q G + Q AR PG P PP
Sbjct: 251 PQG------PPPPGKPQGPP------AQGG--------SKSQSARSPPGKP----QGPPQ 286
Query: 387 SRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPLGPKPG 425
GN P G P PQ P P G P P G
Sbjct: 287 QEGNNPQ--GPPPPAGGNPQQPQAPPAGQPQGPPRPPQG 323
Score = 50.1 bits (118), Expect = 1e-05
Identities = 85/328 (25%), Positives = 107/328 (32%), Gaps = 60/328 (18%)
Query: 139 LKQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPG----YGRPPISNEE 194
L + + P A PQ P G PP PQ PP G G PP +
Sbjct: 19 LNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 78
Query: 195 GGNPYFGYFGYHGFGGR-PPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNS 253
G P G R PP + Q +P+ PP + G P + +
Sbjct: 79 GPPPQ----GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNR-PQGPP 133
Query: 254 TQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPL--PAVNASGQGGP--GSQIPW 309
P+G D S + S PG G PP Q G P P QG P G + P
Sbjct: 134 PPGKPQGPPPQGDKSRSPRSPPGKPQG--PPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQ 191
Query: 310 RPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERK 369
P P + P P G + + + G Q P Q Q P
Sbjct: 192 GPPPPGKPQGPP-------PQGDKSRSSQSPPGKPQGPPPQGGNQPQGPP---------- 234
Query: 370 QVARPGNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPLGPKPGPVVR 429
PG P PP GN KPQGP P G P GP +
Sbjct: 235 --PPPGKP----QGPPPQGGN-------------KPQGP--PPPG---KPQGPPAQGGSK 270
Query: 430 NEKIQNPKEKPLGPKEQIIVPTKNPTSP 457
++ ++P KP GP +Q NP P
Sbjct: 271 SQSARSPPGKPQGPPQQ---EGNNPQGP 295
Score = 47.8 bits (112), Expect = 6e-05
Identities = 61/241 (25%), Positives = 80/241 (33%), Gaps = 33/241 (13%)
Query: 81 GLPQQFPQY--QMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRP 138
G PQ P P P PPP + P+ N+ KP + + P
Sbjct: 95 GKPQGPPPQGGNQPQGPPPPPGK---PQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSP 151
Query: 139 LKQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPP--WQIPQRLPPPG--YGRPPISNEE 194
P Q P + PQ PP P PP + PQ PPPG G PP ++
Sbjct: 152 RSPPGKPQGPPPQGGNQPQGPPPPPGK--PQGPPPQGGKKPQGPPPPGKPQGPPPQGDKS 209
Query: 195 GGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPT-ANSTVTETNS 253
+ PP + Q +P+ PP + G P N
Sbjct: 210 RSSQ------------SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 257
Query: 254 TQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQ 313
+P +QGG+ S + S PG G PP Q G P G P P +P
Sbjct: 258 GKPQGPPAQGGS-KSQSARSPPGKPQG--PPQQEGNNP------QGPPPPAGGNPQQPQA 308
Query: 314 P 314
P
Sbjct: 309 P 309
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 52.4 bits (124), Expect = 2e-06
Identities = 132/589 (22%), Positives = 172/589 (29%), Gaps = 105/589 (17%)
Query: 87 PQYQMPMWPQ----PPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKR---PL 139
P P+ P+ PP T P + P Q P + + P+K P
Sbjct: 867 PSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPA 926
Query: 140 KQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQI--PQRLPPPGYGRPPISNEEGGN 197
+ P P+ PP A PP G P W P PP G P + +G
Sbjct: 927 PKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAP 986
Query: 198 PYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAE-SPGTEPTANSTVTETNSTQP 256
GG P S + P PP + SP P T +T P
Sbjct: 987 TPPAATPPSPKGG-PATPSPK----GAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPP 1041
Query: 257 NPKGSQG------GNDTSPT--------GNSTPGLNTGNNPPAQNGIGPLPAVNASGQGG 302
+PKGS G T+P G +TP L PPA A S +GG
Sbjct: 1042 SPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPA--------ATPPSPKGG 1093
Query: 303 PGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWN 362
P + P + P P PS + T G P + G
Sbjct: 1094 PATPSP---------KGAPMPPAATPPSPKGGLATPPHKG-APTTPAATPPSPKGG---- 1139
Query: 363 FFAWERKQVARP---GNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAP 419
+A P G P A PP+ +G P+G P T +P
Sbjct: 1140 --------LATPPPKGAPTTPAATPPSPKGGLAT---------PPPKGAPTTPAATPPSP 1182
Query: 420 LGPKPGPVVRNEKIQNPKEKPLGPKEQIIVPTKN--PTSPWRNSQQYEVNKSNYKLPHSE 477
G P + P P PK + P+ PT+P K P +
Sbjct: 1183 KGGLATPSPKGAP-TTPAATPPSPKGGLATPSPKGAPTTPAATPPS---PKGGLATPSPK 1238
Query: 478 GYMPVPNFNSVDQHENSYYPRGDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSE 537
G P P+G P T P + G P++ N
Sbjct: 1239 GAPTTPAATPPS-------PKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPN--- 1288
Query: 538 LKHSSYQPAVYPEEIPSPAKEHFPAGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGSRGS 597
PAV P P P K PG P P +G+
Sbjct: 1289 -------PAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPG-----TPPP----KGA 1332
Query: 598 VFYPEYNPYDPRENSPYLRGNTWDERDDSPNTMGQKESPLYPINTPDQK 646
P P P+ +P L T + P T KE P P TP K
Sbjct: 1333 PTPPAVTPPSPK-GTPTLPATTPSSK-GGPTTPSSKEGPTPPAATPSHK 1379
Score = 39.7 bits (91), Expect = 0.017
Identities = 124/619 (20%), Positives = 177/619 (28%), Gaps = 79/619 (12%)
Query: 83 PQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLK-Q 141
P+ P P W PP P P P+ + PP P +
Sbjct: 950 PKGGPATPSPKWAPTPPAATPPSPKGGPAT------------PSPKGAPTPPAATPPSPK 997
Query: 142 PSHNQPQPEEEAQPPQAFPPFGNG---LFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNP 198
P P+ PP PP G P+ + P PP G P + G P
Sbjct: 998 GGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAP 1057
Query: 199 YFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNP 258
G P S + P PP + P+ +T P+P
Sbjct: 1058 TTPAATLPSPKGGPATPSLK----GAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSP 1113
Query: 259 KGS-----QGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVN-ASGQGGPGSQIP-WRP 311
KG G T+P + P G P G PA S +GG + P P
Sbjct: 1114 KGGLATPPHKGAPTTPAA-TPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAP 1172
Query: 312 SQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERKQV 371
+ P P + PS + G P + P+
Sbjct: 1173 TTPAATPPSPKGGLAT-PSPK-----GAPTTPAATPPSPKGGLATPSPK----------- 1215
Query: 372 ARPGNPVYHKAYPPTSRGNY--PNYAGNPANLRRKPQGPNKHPVGTTV--APLGPKPGPV 427
G P A PP+ +G P+ G P P P P AP P P
Sbjct: 1216 ---GAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPP 1272
Query: 428 VRNEKIQNPKEKPLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGY--MPVPNF 485
+ P K P ++ P P + + P +G P P
Sbjct: 1273 SLKGGLATPPHKG-APNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKG 1331
Query: 486 NSVDQHENSYYPRGD---SRKVPNSDGQTQSQNLPKGIV--------LGSRRMPYESETN 534
P+G P+S G + + +G G M S
Sbjct: 1332 APTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKR 1391
Query: 535 QSEL---KHSSYQPAVYP-EEIPSPAKEHFPAGRNTWDHQEISPP------FKEDPGRQE 584
+ K PAV P +PA G T +++PP K+ P
Sbjct: 1392 GPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSA 1451
Query: 585 EHLPHPSHGSRGSVFYPEYNPYDPRENSPYLRGNTWDERDDSPNTMGQKESPLYPI---N 641
+ S+G P P P+E + T +P T +P P +
Sbjct: 1452 PKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPS 1511
Query: 642 TPDQKEIVPYNEEDPVDPT 660
+P + P + DP+ PT
Sbjct: 1512 SPKEVPATPSSRRDPIAPT 1530
Score = 39.3 bits (90), Expect = 0.022
Identities = 142/689 (20%), Positives = 216/689 (31%), Gaps = 164/689 (23%)
Query: 133 PPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISN 192
P K P+ P P+ P PP G P PP PP G P +
Sbjct: 1235 PSPKGAPTTPAATPPSPKGGPATP---PPKGAPTPPAATPPSLKGGLATPPHKGAPNPAV 1291
Query: 193 EEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETN 252
+P G G P P P SPGT P + T
Sbjct: 1292 VTPPSPKGGPATSPPKGAPTP-------------PAATPPSPKGSPGTPPPKGAP-TPPA 1337
Query: 253 STQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPS 312
T P+PKG+ T+P+ P P ++ G P PA S +GGP +
Sbjct: 1338 VTPPSPKGTPTLPATTPSSKGGP-----TTPSSKEGPTP-PAATPSHKGGPAM------T 1385
Query: 313 QPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERKQVA 372
P+ + P+ + P+ + P+
Sbjct: 1386 PPSPKRGPAIPSPKGDPTS--------------------PAVIPLSPK-----------K 1414
Query: 373 RPGNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPLGPKPGPVVRNEK 432
P PV + S+G+ A P +L++ P A PK GP + K
Sbjct: 1415 APATPVTREGAATPSKGDLTPPAVTPVSLKKAP------------ATSAPKGGPATPSSK 1462
Query: 433 IQN--PKEKPLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYMPVPNFNSVDQ 490
P P PKE P +P +Q + S K P + M P +V
Sbjct: 1463 GDPTLPAVTPPSPKE--------PPAP----KQVATSSSPKKAPATPAPMGAPTLPAVIP 1510
Query: 491 HENSYYPRGDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKHSSYQPAVYPE 550
++VP + + P +L S++ P ++ + + P+ P+
Sbjct: 1511 --------SSPKEVPATPSSRRDPIAPTATLL-SKKTPATLAPKEALIPPAMTVPS--PK 1559
Query: 551 EIPS-PAKEHFPAGRNTWDHQEISPP------FKEDPGRQEEHLPHPSHGSRGSVFYPEY 603
+ P+ P + PA ++ + SPP +K P +E +P P
Sbjct: 1560 KTPAIPTPKEAPATPSS--KEASSPPAVTPSTYKGAPSPKELLIP------------PAV 1605
Query: 604 NPYDPRENSPYLRGNTWDERDDSPNTMGQKESPLYPINTPDQKEIVPYNEEDPVDPTGDE 663
P+E +P T + P T K +P P TP + P + G
Sbjct: 1606 TSPSPKE-APTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGAT 1664
Query: 664 VFPGQNRWGEELSFKGGPTVRHYEGEQYTSNQPKEYLPYSLDNPSKPREDFYYSEFYPWS 723
V + + L K GPT E + P+ S +
Sbjct: 1665 V----PQASKGLPAKKGPTALK---EVLVAPAPE-------------------STPIITA 1698
Query: 724 PDENFPSYNTASTMPPPIESRGYYVNNAAGP----EESTLFPSRNSWDHRIQAQGQRERR 779
P P +S PPI N + GP + L P + D A+G+
Sbjct: 1699 PTRKGPQTKKSSATSPPICPDPSAKNGSKGPLSTVAPAPLLPVQK--DSSKTAKGK---- 1752
Query: 780 PYFNRNIWDQATHLQKAPARPPDQKGNQP 808
A+H K P PP+ K + P
Sbjct: 1753 ---------DASHSPKGPLAPPESKASTP 1772
Score = 35.0 bits (79), Expect = 0.41
Identities = 51/225 (22%), Positives = 79/225 (35%), Gaps = 32/225 (14%)
Query: 104 PRKSSA---PKRHNKTDQTQETQKPN----QTQSKKPPQKRPLKQPSHNQPQPEEEAQPP 156
P+K+ A PK T ++E P T P K L P+ P P+E PP
Sbjct: 1558 PKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPP 1617
Query: 157 QAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPIS-NEEGGNPYFGYFGYHGFGGRPPYY 215
PP P + P P+ P PP++ + +P G P
Sbjct: 1618 AVTPP-----SPEKGPATPAPKGTPT----SPPVTPSSLKDSPTSPASVTCKMGATVPQA 1668
Query: 216 SEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTP 275
S+ + P ++ P + P ST T T+ P+ ++ + TSP P
Sbjct: 1669 SKGL-------PAKKGPTALKEVLVAPAPESTPIITAPTRKGPQ-TKKSSATSPPICPDP 1720
Query: 276 GLNTGNNPPAQNGIGPLPAV------NASGQGGPGSQIPWRPSQP 314
G+ P + P P + + + +G S P P P
Sbjct: 1721 SAKNGSKGPLST-VAPAPLLPVQKDSSKTAKGKDASHSPKGPLAP 1764
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 52.0 bits (123), Expect = 3e-06
Identities = 61/231 (26%), Positives = 75/231 (32%), Gaps = 11/231 (4%)
Query: 92 PMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSH--NQPQ- 148
P P+ PP + P R K + Q Q NQ+Q P +P P NQ Q
Sbjct: 75 PGKPEGPPPQGGNQSQGPPPRPGKPEG-QPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQG 133
Query: 149 PEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPG----YGRPPISNEEGGNPYFGYFG 204
P P+ PP G P P+ PP G G PP + G P G G
Sbjct: 134 PPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQG--G 191
Query: 205 YHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPN-PKGSQG 263
G P E + PP+ P P+ + P P+G
Sbjct: 192 NQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPP 251
Query: 264 GNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQP 314
P PG G PP N PLP QG P RP +P
Sbjct: 252 QEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQGGRPHRP 302
Score = 48.1 bits (113), Expect = 5e-05
Identities = 80/294 (27%), Positives = 97/294 (32%), Gaps = 74/294 (25%)
Query: 177 PQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAE 236
PQR PPP G+P +GGN G G PP + PP+
Sbjct: 47 PQRTPPPP-GKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQ--------SQGPPPRPG 97
Query: 237 SPGTEPTANSTVTETNSTQPN-PKGS--QGGNDTS--------PTGNSTPGLNTGNNPPA 285
P +P ++ +P P+G QGGN + P G G N PP
Sbjct: 98 KPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPP 157
Query: 286 QNGI--GPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGH 343
+ G GP P QGG SQ P P P E P G Q G
Sbjct: 158 RPGKPEGPPP------QGGNQSQGP--PPHPGKPEGPPPQG------GNQSQGPPPRPGK 203
Query: 344 RQNRPFYRNQQVQRGPRWNFFAWERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPANLRR 403
+ P Q Q P RPG P PP+ GN
Sbjct: 204 PEGPPPQGGNQSQGPP------------PRPGKP----EGPPSQGGN------------- 234
Query: 404 KPQGPNKHPVGTTVAPLGPKPGPVVRNEKIQNPKEKPLGPKEQIIVPTKNPTSP 457
KPQGP HP P GP P + ++ P +P GP P NP P
Sbjct: 235 KPQGPPPHP----GKPQGPPPQEGNKPQR-PPPPGRPQGPPP----PGGNPQQP 279
Score = 38.1 bits (87), Expect = 0.048
Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 3/109 (2%)
Query: 92 PMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQPQPEE 151
P P+ PP + P R K + +Q N+ Q P +P P +P+
Sbjct: 201 PGKPEGPPPQGGNQSQGPPPRPGKPEGPP-SQGGNKPQGPPPHPGKPQGPPPQEGNKPQR 259
Query: 152 EAQP--PQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNP 198
P PQ PP G PP PQ PPP G P +G P
Sbjct: 260 PPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQGGRPHRPPQGQPP 308
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 51.2 bits (121), Expect = 5e-06
Identities = 40/159 (25%), Positives = 54/159 (33%), Gaps = 28/159 (17%)
Query: 80 NGLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRH------------------NKTDQTQE 121
N PQQ P Q P PQPPP P S +P R+ N + T
Sbjct: 589 NRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSSANTSTPTVS 648
Query: 122 TQKPNQTQSKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGN-GLFPYQQPPWQIPQRL 180
+ P Q +PP + + P P P + +G PY PP Q
Sbjct: 649 SYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYGGYNPAPYTPPPPPTAQTY 708
Query: 181 PPPGYGR---------PPISNEEGGNPYFGYFGYHGFGG 210
P P Y + N+ PY+G + Y + G
Sbjct: 709 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGNYDYGSYSG 747
Score = 37.7 bits (86), Expect = 0.063
Identities = 45/195 (23%), Positives = 68/195 (34%), Gaps = 47/195 (24%)
Query: 182 PPGYGRPPISNEEGGNP----YFGYFGYHGFGGRPPYYSEEMFEQDFEK----------- 226
PPG R N GG+ Y G F G GG YS+ + +
Sbjct: 534 PPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGG----YSQNRWGNNNRDNNNSNNRGSYN 589
Query: 227 --PKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGS-----------QGGNDTSPTGNS 273
P+++ PP+ P P + S NP G+ N ++PT +S
Sbjct: 590 RAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSSANTSTPTVSS 649
Query: 274 -TPGLNTGNNPPAQNG------------IGPLPAVNASGQGGPGSQIPWRPSQPNIRENH 320
+P + + PP G P PA N GG + P+ P P + +
Sbjct: 650 YSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYGG-YNPAPYTPPPPPTAQTY 708
Query: 321 PYPNIRNFPS-GRQW 334
P P+ + +QW
Sbjct: 709 PQPSYNQYQQYAQQW 723
Score = 30.8 bits (68), Expect = 7.7
Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 18/130 (13%)
Query: 130 SKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGN--GLFPYQQ------------PPWQ 175
++ P Q+ P +QP QP P++ PP ++ P N G Y + P
Sbjct: 589 NRAPQQQPPPQQPPPPQPPPQQPP-PPPSYSPARNPPGASTYNKNSNIPGSSANTSTPTV 647
Query: 176 IPQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKA 235
P P Y +PP + +GG GY PP Y+ + P PP
Sbjct: 648 SSYSPPQPSYSQPPYN--QGGYSQ-GYTAPPPPPPPPPAYNYGSYGGYNPAPYTPPPPPT 704
Query: 236 ESPGTEPTAN 245
+P+ N
Sbjct: 705 AQTYPQPSYN 714
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 51.2 bits (121), Expect = 5e-06
Identities = 40/159 (25%), Positives = 54/159 (33%), Gaps = 28/159 (17%)
Query: 80 NGLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRH------------------NKTDQTQE 121
N PQQ P Q P PQPPP P S +P R+ N + T
Sbjct: 689 NRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSSANTSTPTVS 748
Query: 122 TQKPNQTQSKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGN-GLFPYQQPPWQIPQRL 180
+ P Q +PP + + P P P + +G PY PP Q
Sbjct: 749 SYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYGGYNPAPYTPPPPPTAQTY 808
Query: 181 PPPGYGR---------PPISNEEGGNPYFGYFGYHGFGG 210
P P Y + N+ PY+G + Y + G
Sbjct: 809 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGNYDYGSYSG 847
Score = 37.7 bits (86), Expect = 0.063
Identities = 45/195 (23%), Positives = 68/195 (34%), Gaps = 47/195 (24%)
Query: 182 PPGYGRPPISNEEGGNP----YFGYFGYHGFGGRPPYYSEEMFEQDFEK----------- 226
PPG R N GG+ Y G F G GG YS+ + +
Sbjct: 634 PPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGG----YSQNRWGNNNRDNNNSNNRGSYN 689
Query: 227 --PKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGS-----------QGGNDTSPTGNS 273
P+++ PP+ P P + S NP G+ N ++PT +S
Sbjct: 690 RAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSSANTSTPTVSS 749
Query: 274 -TPGLNTGNNPPAQNG------------IGPLPAVNASGQGGPGSQIPWRPSQPNIRENH 320
+P + + PP G P PA N GG + P+ P P + +
Sbjct: 750 YSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYGG-YNPAPYTPPPPPTAQTY 808
Query: 321 PYPNIRNFPS-GRQW 334
P P+ + +QW
Sbjct: 809 PQPSYNQYQQYAQQW 823
Score = 30.8 bits (68), Expect = 7.7
Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 18/130 (13%)
Query: 130 SKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGN--GLFPYQQ------------PPWQ 175
++ P Q+ P +QP QP P++ PP ++ P N G Y + P
Sbjct: 689 NRAPQQQPPPQQPPPPQPPPQQPP-PPPSYSPARNPPGASTYNKNSNIPGSSANTSTPTV 747
Query: 176 IPQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKA 235
P P Y +PP + +GG GY PP Y+ + P PP
Sbjct: 748 SSYSPPQPSYSQPPYN--QGGYSQ-GYTAPPPPPPPPPAYNYGSYGGYNPAPYTPPPPPT 804
Query: 236 ESPGTEPTAN 245
+P+ N
Sbjct: 805 AQTYPQPSYN 814
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 51.2 bits (121), Expect = 5e-06
Identities = 118/538 (21%), Positives = 176/538 (32%), Gaps = 103/538 (19%)
Query: 138 PLKQPSHNQPQPEEEAQPP--QAFPPFGNGLFPYQQPPWQIPQR-------------LPP 182
P QP + P P PP Q +P G P Q PQ+ L P
Sbjct: 477 PHSQPQQSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYPQQQDSGDATWKETFWLMP 536
Query: 183 PGYGRPPISN--EEGGNPYFGY---------------------------FGYHGFGGR-- 211
P YG+ +S ++G PY+ G+G R
Sbjct: 537 PQYGQQGVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQ 596
Query: 212 PPYYSEEMFEQDFEKPKEEDPPKAES---------PGTEPTANSTVTETNST-----QPN 257
PP + +D ++E P GTE T +S V+ + ST Q N
Sbjct: 597 PPLAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSN 656
Query: 258 PKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGG------PGSQIPWRP 311
P S SP +S PG P+ + +G N S G PGSQ+P +P
Sbjct: 657 PAQSPFSPHASPHLSSIPG------GPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQP 710
Query: 312 SQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERKQV 371
E+ +P + P ++ G + G ++N + Q GP
Sbjct: 711 PGSQ-SESSSHPALSQSPMPQE---RGFMAGTQRNPQMAQYGPQQTGP-------SMSPH 759
Query: 372 ARPGNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPLGPKPGPVVRNE 431
PG + H + N G P + PQG P + P GP
Sbjct: 760 PSPGGQM-HAGISSFQQSNSSGTYG-PQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMG 817
Query: 432 KIQNPKEKPLGPKEQI-IVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYM---------P 481
N + GP + VP S ++ + N S+ P S G P
Sbjct: 818 ISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSS-MTPSSPGMSQQGGPGMGPP 876
Query: 482 VPNFNSVDQHENSYYPRGDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKHS 541
+P N Q + + + + G N G++ S PY N S +
Sbjct: 877 MPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMN-QSGLMASS--SPYSQPMNNSSSLMN 933
Query: 542 SYQP--AVYPEEIPSPAKEHFPAGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGSRGS 597
+ P ++ P + S A A + ++ P K D +EE P P S+ S
Sbjct: 934 TQAPPYSMAPAMVNSSAASVGLADMMSPGESKLPLPLKAD--GKEEGTPQPESKSKKS 989
Score = 38.9 bits (89), Expect = 0.028
Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 32/253 (12%)
Query: 630 MGQKESPLYPINTPDQKEIVPYNEEDPVD--PTGDE--------VFPGQNRWGEELSFKG 679
MGQ++ +P + PY ++ P P+G ++P Q + +
Sbjct: 1265 MGQRQQ--FPYGASYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGLYPQQPNYKRHMDGMY 1322
Query: 680 GPTVRHYEGE----QYTSNQPKEYLPYSLDNPSKPREDFYYSEFYPWSPDE-NFPSYNTA 734
GP + +EG+ QY+S Q + Y Y R YP+S + P
Sbjct: 1323 GPPAKRHEGDMYNMQYSSQQQEMYNQYGGSYSGPDRRPIQGQYPYPYSRERMQGPGQIQT 1382
Query: 735 STMPPPIESRGYYVNNAAGPEESTLFPSRNSWDHRIQAQ----GQRERRPYFNRNIWDQA 790
+PP + +++ GP+++ ++ +RN + Q + G + PY N D
Sbjct: 1383 HGIPPQMMGGPLQSSSSEGPQQN-MWAARNDMPYPYQNRQGPGGPTQAPPYPGMNRTDDM 1441
Query: 791 ----THLQKAPARPPDQKGNQPYYSNT----PAGLQKNPIWHEGENLNYGMQITRMNSPE 842
+ P QPY S++ P P + +L I+R SP
Sbjct: 1442 MVPDQRINHESQWPSHVSQRQPYMSSSASMQPITRPPQPSYQTPPSL--PNHISRAPSPA 1499
Query: 843 REHSSFPNFIPPS 855
S N + PS
Sbjct: 1500 SFQRSLENRMSPS 1512
Score = 38.1 bits (87), Expect = 0.048
Identities = 53/252 (21%), Positives = 80/252 (31%), Gaps = 51/252 (20%)
Query: 95 PQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQPQPEEEAQ 154
P PP+ H A H+ Q ++ Q++ +Q Q Q +
Sbjct: 18 PAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPIS 77
Query: 155 PPQAFPPFGNGLFPYQQPPWQIPQ-----------RLPPPGYGRPPISNEEG-------- 195
+ G G P P + PQ + PPG PP+ ++ G
Sbjct: 78 NNNSLGGAGGGA-PQPGPDMEQPQHGGAKDSAAGGQADPPG---PPLLSKPGDEDDAPPK 133
Query: 196 -GNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNST 254
G P G + + G G ++P P P P N+
Sbjct: 134 MGEPAGGRYEHPGLGALGT-----------QQPPVAVPGGGGGPAAVPEFNNYYGSAAPA 182
Query: 255 QPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQ- 313
P G G G +PG+ G + + +A+ G PGS P + S
Sbjct: 183 SGGPGGRAGPCFDQHGGQQSPGM------------GMMHSASAAAAGAPGSMDPLQNSHE 230
Query: 314 --PNIRENHPYP 323
PN + NH YP
Sbjct: 231 GYPNSQCNH-YP 241
>gi|56117844 synovial sarcoma translocation, chromosome 18 isoform 2
[Homo sapiens]
Length = 387
Score = 50.8 bits (120), Expect = 7e-06
Identities = 72/278 (25%), Positives = 94/278 (33%), Gaps = 48/278 (17%)
Query: 79 GNGLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQ------TQSKK 132
G G P P Q M Q P P + P + N T+ + + S
Sbjct: 111 GGGPPA--PHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVP 168
Query: 133 PPQKRPLKQP---SHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPP 189
Q P++ S QP +P + P G +QQPP Q Q P G G+
Sbjct: 169 SSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP-NQGPMMHQQPPSQ--QYNMPQGGGQ-- 223
Query: 190 ISNEEGGNPYFGYFGY-----HGFGGR--PPYYSEEMFEQDFEKPKEEDPPKAESPGTEP 242
+ +G P G G H G R PPY +P ++ PP+ S G E
Sbjct: 224 --HYQGQQPPMGMMGQVNQGNHMMGQRQIPPY-----------RPPQQGPPQQYS-GQED 269
Query: 243 TANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTG--NNPPAQNGIGPLPAVNASGQ 300
+ P Q P GNS G PP Q G P Q
Sbjct: 270 YYGDQYSHGGQGPPEGMNQQ----YYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQ 325
Query: 301 GGPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTG 338
G PG Q + PSQ P P N+P G+ + G
Sbjct: 326 GYPGQQQGYGPSQ-----GGPGPQYPNYPQGQGQQYGG 358
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 50.8 bits (120), Expect = 7e-06
Identities = 68/276 (24%), Positives = 98/276 (35%), Gaps = 48/276 (17%)
Query: 76 PFFGNGLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKP-- 133
P +G P+ Q PP T P + +T QT + P Q + +P
Sbjct: 229 PLQQDGTPKSISSQQPEKIKSQPPGTGKPIQGPT-----QTPQTDHAKLPLQRDASRPQT 283
Query: 134 -----------------PQKRPLKQPSHNQP---QP-EEEAQPPQAFPPF-GNGLF-PYQ 170
P K P++QP+ +P QP E++QP A PP +GL P
Sbjct: 284 KQADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLA 343
Query: 171 QPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEE 230
Q P + + PPG +PP P G + EQ K +
Sbjct: 344 QQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTG----------SEKPSSEQPGPKALAQ 393
Query: 231 DPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDT-----SPTGNSTPGLNTGNNPPA 285
P ++P +P T+ T P P Q G + PT G P
Sbjct: 394 PPGVGKTPAQQPGPAKPPTQQVGT-PKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQ 452
Query: 286 QNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHP 321
Q G G A +G P SQ+P P++P ++ P
Sbjct: 453 QAGPGKTSA-QQTGPTKPPSQLP-GPAKPPPQQPGP 486
Score = 41.2 bits (95), Expect = 0.006
Identities = 116/529 (21%), Positives = 187/529 (35%), Gaps = 109/529 (20%)
Query: 96 QPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQPQPEE--EA 153
QP P P + + P + QT T+ P+Q P K P +QP +P P++ A
Sbjct: 443 QPGPGKI-PAQQAGPGK-TSAQQTGPTKPPSQLPG---PAKPPPQQPGPAKPPPQQPGSA 497
Query: 154 QPPQAFPPFGNGLFPYQQP------PWQIPQRLPP---PGYGRP---------------- 188
+PP P G+ P QQP P Q PP PG +P
Sbjct: 498 KPPSQQP--GSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQST 555
Query: 189 -PISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTE-PTANS 246
P+S G P +PP S P + PP P T P N+
Sbjct: 556 KPVSQTGSGKPL-----------QPPTVS----------PSAKQPPSQGLPKTICPLCNT 594
Query: 247 TVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQ 306
TE P + T S G N P + +N + G
Sbjct: 595 --TELLLHVPEKANFNTCTECQTTVCSLCGFNPN---PHLTEVKEWLCLNCQMKRALGGD 649
Query: 307 IPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAW 366
+ PS P P ++ P T ++ P Q Q P+ + A
Sbjct: 650 LAPVPSSPQ-------PKLKTAP-------VTTTSAVSKSSP----QPQQTSPKKD--AA 689
Query: 367 ERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPLGPKPGP 426
++ +++ P K PP + P G+P+ ++P P +++ P P
Sbjct: 690 PKQDLSKAPEP---KKPPPLVK--QPTLHGSPSAKAKQP------PEADSLSKPAPPKEP 738
Query: 427 VVRNEKIQNP--KEKPLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYMPVPN 484
V +E+ + P +KP PK ++ PT + S + + ++ S + E P
Sbjct: 739 SVPSEQDKAPVADDKPKQPK--MVKPTTDLVSSSSATTKPDIPSSKVQSQAEEKTTPPLK 796
Query: 485 FNSVDQHENSYYPRG------DSRKVPN--SDGQTQSQNLPKGIVLGSRRMPYESETNQS 536
+S + S+ P G DS+ +P SD + S P G +++ + +
Sbjct: 797 TDSA-KPSQSFPPTGEKVSPFDSKAIPRPASDSKIISHPGPSSESKGQKQV--DPVQKKE 853
Query: 537 ELKHSSYQPAVYPEEIPSPAKEHFPAGRNTWDHQEISPPFKEDPGRQEE 585
E K + + + P+ P P P G Q + P ++ P QE+
Sbjct: 854 EPKKAQTKMSPKPDAKPMPKGSPTPPGPRPTAGQTVPTP-QQSPKPQEQ 901
Score = 41.2 bits (95), Expect = 0.006
Identities = 31/103 (30%), Positives = 37/103 (35%), Gaps = 17/103 (16%)
Query: 87 PQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRP-LKQPSHN 145
P Q P +PPP P K S P Q S KPP ++P +PS
Sbjct: 499 PPSQQPGSTKPPPQQPGPAKPS----------------PQQPGSTKPPSQQPGSAKPSAQ 542
Query: 146 QPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRP 188
QP P + + P G QPP P PP G P
Sbjct: 543 QPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQGLP 585
Score = 40.8 bits (94), Expect = 0.007
Identities = 52/237 (21%), Positives = 78/237 (32%), Gaps = 26/237 (10%)
Query: 87 PQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQ 146
P Q P P+P P P + P + + T ++ +Q+P + +S+ P +P++ P+
Sbjct: 210 PLQQQP--PKPIPKQQGPGRD--PLQQDGTPKSISSQQPEKIKSQPPGTGKPIQGPTQT- 264
Query: 147 PQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGYH 206
PQ + P Q + LP P +PPI G P G+
Sbjct: 265 PQTDHAKLPLQRDASRPQTKQADIVRGESVKPSLPSPS--KPPIQQPTPGKPPAQQPGH- 321
Query: 207 GFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGND 266
+ +P PP S T+P A T QP
Sbjct: 322 ----------------EKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQP 365
Query: 267 TSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYP 323
P P TG+ P+ GP G G +Q P P + P P
Sbjct: 366 LGPA--KPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKP 420
Score = 38.9 bits (89), Expect = 0.028
Identities = 65/270 (24%), Positives = 91/270 (33%), Gaps = 42/270 (15%)
Query: 84 QQFPQYQMPMWPQPPPNTWHP-RKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQP 142
+Q P+ P PP P + AP +K Q + + S +P
Sbjct: 721 KQPPEADSLSKPAPPKEPSVPSEQDKAPVADDKPKQPKMVKPTTDLVSSSSATTKPDIPS 780
Query: 143 SHNQPQPEEEAQPP---------QAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNE 193
S Q Q EE+ PP Q+FPP G + P+ + +P P IS+
Sbjct: 781 SKVQSQAEEKTTPPLKTDSAKPSQSFPPTGEKVSPFDS------KAIPRPASDSKIISHP 834
Query: 194 EGGNPYFGYFGYHGFGGR--PPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTET 251
+ G + P +M + KP + P PG PTA TV T
Sbjct: 835 GPSSESKGQKQVDPVQKKEEPKKAQTKMSPKPDAKPMPKGSP--TPPGPRPTAGQTV-PT 891
Query: 252 NSTQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNAS------------G 299
P P+ Q + G+ T + P + G L AS G
Sbjct: 892 PQQSPKPQ-EQSRRFSLNLGSITDAPKSQPTTPQETVTGKLFGFGASIFSQASNLISTAG 950
Query: 300 QGGPGSQ----IPWR----PSQPNIRENHP 321
Q GP SQ P + PSQP + P
Sbjct: 951 QPGPHSQSGPGAPMKQAPAPSQPPTSQGPP 980
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 50.8 bits (120), Expect = 7e-06
Identities = 68/276 (24%), Positives = 98/276 (35%), Gaps = 48/276 (17%)
Query: 76 PFFGNGLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKP-- 133
P +G P+ Q PP T P + +T QT + P Q + +P
Sbjct: 229 PLQQDGTPKSISSQQPEKIKSQPPGTGKPIQGPT-----QTPQTDHAKLPLQRDASRPQT 283
Query: 134 -----------------PQKRPLKQPSHNQP---QP-EEEAQPPQAFPPF-GNGLF-PYQ 170
P K P++QP+ +P QP E++QP A PP +GL P
Sbjct: 284 KQADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLA 343
Query: 171 QPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEE 230
Q P + + PPG +PP P G + EQ K +
Sbjct: 344 QQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTG----------SEKPSSEQPGPKALAQ 393
Query: 231 DPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDT-----SPTGNSTPGLNTGNNPPA 285
P ++P +P T+ T P P Q G + PT G P
Sbjct: 394 PPGVGKTPAQQPGPAKPPTQQVGT-PKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQ 452
Query: 286 QNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHP 321
Q G G A +G P SQ+P P++P ++ P
Sbjct: 453 QAGPGKTSA-QQTGPTKPPSQLP-GPAKPPPQQPGP 486
Score = 41.2 bits (95), Expect = 0.006
Identities = 116/529 (21%), Positives = 187/529 (35%), Gaps = 109/529 (20%)
Query: 96 QPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQPQPEE--EA 153
QP P P + + P + QT T+ P+Q P K P +QP +P P++ A
Sbjct: 443 QPGPGKI-PAQQAGPGK-TSAQQTGPTKPPSQLPG---PAKPPPQQPGPAKPPPQQPGSA 497
Query: 154 QPPQAFPPFGNGLFPYQQP------PWQIPQRLPP---PGYGRP---------------- 188
+PP P G+ P QQP P Q PP PG +P
Sbjct: 498 KPPSQQP--GSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQST 555
Query: 189 -PISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTE-PTANS 246
P+S G P +PP S P + PP P T P N+
Sbjct: 556 KPVSQTGSGKPL-----------QPPTVS----------PSAKQPPSQGLPKTICPLCNT 594
Query: 247 TVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQ 306
TE P + T S G N P + +N + G
Sbjct: 595 --TELLLHVPEKANFNTCTECQTTVCSLCGFNPN---PHLTEVKEWLCLNCQMKRALGGD 649
Query: 307 IPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAW 366
+ PS P P ++ P T ++ P Q Q P+ + A
Sbjct: 650 LAPVPSSPQ-------PKLKTAP-------VTTTSAVSKSSP----QPQQTSPKKD--AA 689
Query: 367 ERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPLGPKPGP 426
++ +++ P K PP + P G+P+ ++P P +++ P P
Sbjct: 690 PKQDLSKAPEP---KKPPPLVK--QPTLHGSPSAKAKQP------PEADSLSKPAPPKEP 738
Query: 427 VVRNEKIQNP--KEKPLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYMPVPN 484
V +E+ + P +KP PK ++ PT + S + + ++ S + E P
Sbjct: 739 SVPSEQDKAPVADDKPKQPK--MVKPTTDLVSSSSATTKPDIPSSKVQSQAEEKTTPPLK 796
Query: 485 FNSVDQHENSYYPRG------DSRKVPN--SDGQTQSQNLPKGIVLGSRRMPYESETNQS 536
+S + S+ P G DS+ +P SD + S P G +++ + +
Sbjct: 797 TDSA-KPSQSFPPTGEKVSPFDSKAIPRPASDSKIISHPGPSSESKGQKQV--DPVQKKE 853
Query: 537 ELKHSSYQPAVYPEEIPSPAKEHFPAGRNTWDHQEISPPFKEDPGRQEE 585
E K + + + P+ P P P G Q + P ++ P QE+
Sbjct: 854 EPKKAQTKMSPKPDAKPMPKGSPTPPGPRPTAGQTVPTP-QQSPKPQEQ 901
Score = 41.2 bits (95), Expect = 0.006
Identities = 31/103 (30%), Positives = 37/103 (35%), Gaps = 17/103 (16%)
Query: 87 PQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRP-LKQPSHN 145
P Q P +PPP P K S P Q S KPP ++P +PS
Sbjct: 499 PPSQQPGSTKPPPQQPGPAKPS----------------PQQPGSTKPPSQQPGSAKPSAQ 542
Query: 146 QPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRP 188
QP P + + P G QPP P PP G P
Sbjct: 543 QPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQGLP 585
Score = 40.8 bits (94), Expect = 0.007
Identities = 52/237 (21%), Positives = 78/237 (32%), Gaps = 26/237 (10%)
Query: 87 PQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQ 146
P Q P P+P P P + P + + T ++ +Q+P + +S+ P +P++ P+
Sbjct: 210 PLQQQP--PKPIPKQQGPGRD--PLQQDGTPKSISSQQPEKIKSQPPGTGKPIQGPTQT- 264
Query: 147 PQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGYH 206
PQ + P Q + LP P +PPI G P G+
Sbjct: 265 PQTDHAKLPLQRDASRPQTKQADIVRGESVKPSLPSPS--KPPIQQPTPGKPPAQQPGH- 321
Query: 207 GFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGND 266
+ +P PP S T+P A T QP
Sbjct: 322 ----------------EKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQP 365
Query: 267 TSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYP 323
P P TG+ P+ GP G G +Q P P + P P
Sbjct: 366 LGPA--KPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKP 420
Score = 38.9 bits (89), Expect = 0.028
Identities = 65/270 (24%), Positives = 91/270 (33%), Gaps = 42/270 (15%)
Query: 84 QQFPQYQMPMWPQPPPNTWHP-RKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQP 142
+Q P+ P PP P + AP +K Q + + S +P
Sbjct: 721 KQPPEADSLSKPAPPKEPSVPSEQDKAPVADDKPKQPKMVKPTTDLVSSSSATTKPDIPS 780
Query: 143 SHNQPQPEEEAQPP---------QAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNE 193
S Q Q EE+ PP Q+FPP G + P+ + +P P IS+
Sbjct: 781 SKVQSQAEEKTTPPLKTDSAKPSQSFPPTGEKVSPFDS------KAIPRPASDSKIISHP 834
Query: 194 EGGNPYFGYFGYHGFGGR--PPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTET 251
+ G + P +M + KP + P PG PTA TV T
Sbjct: 835 GPSSESKGQKQVDPVQKKEEPKKAQTKMSPKPDAKPMPKGSP--TPPGPRPTAGQTV-PT 891
Query: 252 NSTQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNAS------------G 299
P P+ Q + G+ T + P + G L AS G
Sbjct: 892 PQQSPKPQ-EQSRRFSLNLGSITDAPKSQPTTPQETVTGKLFGFGASIFSQASNLISTAG 950
Query: 300 QGGPGSQ----IPWR----PSQPNIRENHP 321
Q GP SQ P + PSQP + P
Sbjct: 951 QPGPHSQSGPGAPMKQAPAPSQPPTSQGPP 980
>gi|56117846 synovial sarcoma translocation, chromosome 18 isoform 1
[Homo sapiens]
Length = 418
Score = 48.9 bits (115), Expect = 3e-05
Identities = 75/300 (25%), Positives = 100/300 (33%), Gaps = 56/300 (18%)
Query: 64 NFMNG--PHMAHLGPFFGNGLPQQFPQYQMPM-WPQPPPNTWHPRKSSAPKRHNKTDQTQ 120
N MNG P H+ P G G P Q M P + S P + Q Q
Sbjct: 121 NQMNGQMPGPNHM-PMQGPG-PNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQ 178
Query: 121 ETQKPNQTQSKKPPQKRPLKQPS-----HNQPQPEEEAQPPQAF--------PPFG---- 163
T Q P+ QP+ H QP P ++ PQ PP G
Sbjct: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQP-PSQQYNMPQGGGQHYQGQQPPMGMMGQ 237
Query: 164 ----NGLFPYQQ-PPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFGGRPPYYSEE 218
N + +Q PP++ PQ+ PP Y G Y+G HG G P +++
Sbjct: 238 VNQGNHMMGQRQIPPYRPPQQGPPQQYS--------GQEDYYGDQYSHGGQGPPEGMNQQ 289
Query: 219 MFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLN 278
+ + P E P +S+ +GGN S G
Sbjct: 290 YYPDGHNDYGYQQPSYPEQGYDRPYEDSS----------QHYYEGGN--SQYGQQQDAYQ 337
Query: 279 TGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTG 338
PP Q G P QG PG Q + PSQ P P N+P G+ + G
Sbjct: 338 ---GPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQ-----GGPGPQYPNYPQGQGQQYGG 389
Score = 40.0 bits (92), Expect = 0.013
Identities = 85/380 (22%), Positives = 128/380 (33%), Gaps = 72/380 (18%)
Query: 254 TQPNPKGSQGGNDTSP-----TGNSTPGLNTGNNPPA---QNGI-GPLPAVNASGQGGPG 304
TQ P G G N + P + N G PPA QN + G +P N GPG
Sbjct: 80 TQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPG 139
Query: 305 SQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRG------ 358
P+Q N+ + N PS G++ G+ + P ++ VQ
Sbjct: 140 ------PNQLNMTNSS-----MNMPSSSH----GSMGGYNHSVPSSQSMPVQNQMTMSQG 184
Query: 359 -PRWNFFAWERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTV 417
P N+ + P+ H+ PP+ + N P QG +H G
Sbjct: 185 QPMGNYGPRPNMSMQPNQGPMMHQQ-PPSQQYNMP-------------QGGGQHYQGQQ- 229
Query: 418 APLGPKPGPVVRNEKIQNPKEKPLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSE 477
P+G N + + P P P + P QQY + Y +S
Sbjct: 230 PPMGMMGQVNQGNHMMGQRQIPPYRP------PQQGPP------QQYSGQEDYYGDQYSH 277
Query: 478 GYMPVPNFNSVDQHENSYYPRGDSRKVPNSDGQTQSQNLPKGI---VLGSRRMPYESETN 534
G P + YYP G N G Q +G S + YE +
Sbjct: 278 GGQGPP-----EGMNQQYYPDGH-----NDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNS 327
Query: 535 QSELKHSSYQPAVYPEEIPSPAKEHFPAGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGS 594
Q + +YQ P++ P ++ +P + Q+ P + PG Q + P
Sbjct: 328 QYGQQQDAYQGPP-PQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQ 386
Query: 595 RGSVFYPEYNPYDPRENSPY 614
G + P P + PY
Sbjct: 387 YGGYRPTQPGPPQPPQQRPY 406
Score = 38.5 bits (88), Expect = 0.037
Identities = 80/364 (21%), Positives = 117/364 (32%), Gaps = 95/364 (26%)
Query: 79 GNGLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQ------TQSKK 132
G G P P Q M Q P P + P + N T+ + + S
Sbjct: 111 GGGPPA--PHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVP 168
Query: 133 PPQKRPLKQP---SHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPP 189
Q P++ S QP +P + P G +QQPP Q Q P G G+
Sbjct: 169 SSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP-NQGPMMHQQPPSQ--QYNMPQGGGQ-- 223
Query: 190 ISNEEGGNPYFGYFGY-----HGFGGR--PPYYSEEMFEQDFEKPKEEDPPKAESPGTEP 242
+ +G P G G H G R PPY +P ++ PP+ S G E
Sbjct: 224 --HYQGQQPPMGMMGQVNQGNHMMGQRQIPPY-----------RPPQQGPPQQYS-GQE- 268
Query: 243 TANSTVTETNSTQPNPKGSQGGNDTSPTGNSTP-GLNTGNNPPAQNGIGPLPAVNASGQG 301
G+ S G P G+N P N G
Sbjct: 269 ------------------DYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQ--------- 301
Query: 302 GPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRW 361
+PS P + PY + Q Y+ G + Q + Y+ Q+G
Sbjct: 302 --------QPSYPEQGYDRPYED------SSQHYYEGGNSQYGQQQDAYQGPPPQQG--- 344
Query: 362 NFFAWERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPANLRRK-----------PQGPNK 410
+ +++ + G P + Y P+ G P Y P ++ PQ P +
Sbjct: 345 -YPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQ 403
Query: 411 HPVG 414
P G
Sbjct: 404 RPYG 407
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 48.9 bits (115), Expect = 3e-05
Identities = 63/259 (24%), Positives = 94/259 (36%), Gaps = 26/259 (10%)
Query: 237 SPGTEPTANSTVTETNSTQP-NPKGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAV 295
SP PT+ S + S P +P S SPT S + +P + N P+
Sbjct: 1703 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSY 1762
Query: 296 NASGQGGPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQV 355
+ + + + P+ PN P + + PS ++ T + + P Y Q
Sbjct: 1763 SPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS-PS-----YSPTSPSYSPSSPRYTPQSP 1816
Query: 356 QRGPRWNFFAWERKQVA------RPGNPVYHKA---YPPTSRGNYPNYAGNPANLRRKPQ 406
P ++ + P +P Y + Y PTS P Y+ P + + P
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTS----PKYS--PTSPKYSPT 1870
Query: 407 GPNKHPVGTTVAPLGPKPGPVVRNEKIQNPKEKPLGPKEQIIVPTKNPTSPWRN--SQQY 464
P P T +P PK P +P P PK PT +PTSP + S Y
Sbjct: 1871 SPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTY 1930
Query: 465 EVN--KSNYKLPHSEGYMP 481
K + P S GY P
Sbjct: 1931 SPTSPKGSTYSPTSPGYSP 1949
Score = 43.1 bits (100), Expect = 0.001
Identities = 59/231 (25%), Positives = 82/231 (35%), Gaps = 26/231 (11%)
Query: 237 SPGTEPTA-NSTVTETNSTQPNPKGSQGGNDTSPTG-NSTPGLNTGNNPPAQNGIGPL-P 293
SP PT+ N + T N T +P S SPT N TP + N P P P
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTP--TSPNYSPTSPSYSPTSP 1795
Query: 294 AVNASGQGGPGSQIPWRPSQPNIRENHP-YPNIRNFPSGRQWYFTGTVMGHRQNRPFYRN 352
+ + + S + P P + P Y S +T T + + P Y
Sbjct: 1796 SYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTP 1855
Query: 353 QQVQRGPRWNFFAWERKQVARPGNPVYHKA---YPPTSRGNYPNYAGNPANLRRKPQGPN 409
+ P ++ + + P +P Y Y PTS P Y+ P + P P
Sbjct: 1856 TSPKYSPTSPKYSPTSPKYS-PTSPTYSPTTPKYSPTS----PTYS--PTSPVYTPTSPK 1908
Query: 410 KHPVGTTVAPLGPKPGPVVRNEKIQNPKEKPLGPKEQIIVPTK---NPTSP 457
P T +P PK P +P P PK PT +PTSP
Sbjct: 1909 YSPTSPTYSPTSPKYSPT-------SPTYSPTSPKGSTYSPTSPGYSPTSP 1952
Score = 37.4 bits (85), Expect = 0.082
Identities = 93/409 (22%), Positives = 130/409 (31%), Gaps = 45/409 (11%)
Query: 376 NPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPLGPKPGPVVRNEKI-- 433
+P Y A+ PT P G+P P P G ++P P
Sbjct: 1558 SPGYSPAWSPT-----PGSPGSPG-----PSSPYIPSPGGAMSPSYSPTSPAYEPRSPGG 1607
Query: 434 ---QNPKEKPLGPKEQIIVPTKNPTSP--WRNSQQYEVNKSNYKLPHSEGYMPV-----P 483
Q+P P P P+ +PTSP S Y +Y P S Y P P
Sbjct: 1608 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSP 1666
Query: 484 NFNSVDQHENSYYPRGDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKHS-S 542
S SY P S + S + S P S T+ S S S
Sbjct: 1667 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1726
Query: 543 YQPAVYPEEIPSPAKEHFPAGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGSRGSVFYPE 602
Y P SP+ + P N + SP + P PS+ + P
Sbjct: 1727 YSPTSPSYSPTSPS--YSPTSPN---YSPTSPNY--TPTSPSYSPTSPSYSPTSPNYTPT 1779
Query: 603 YNPYDPRENSPYLRGNTWDERDDSPNTMGQKESPLYPINTPDQKEIVPYNEE-DPVDPTG 661
Y P S ++ S + + +P P TP P + P P
Sbjct: 1780 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839
Query: 662 DEVFPGQNRWGEELSFKGGPTVRHYE--GEQYTSNQPKEYLPYS-LDNPSKPREDFYYSE 718
P + E + PT Y +Y+ PK Y P S +P+ P+
Sbjct: 1840 TPTSPSYSPSSPEYT----PTSPKYSPTSPKYSPTSPK-YSPTSPTYSPTTPKYSPTSPT 1894
Query: 719 FYPWSP--DENFPSYN-TASTMPP--PIESRGYYVNNAAGPEESTLFPS 762
+ P SP P Y+ T+ T P P S + P+ ST P+
Sbjct: 1895 YSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPT 1943
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 48.5 bits (114), Expect = 4e-05
Identities = 76/305 (24%), Positives = 91/305 (29%), Gaps = 81/305 (26%)
Query: 68 GPHMAHLGPFFGNGLPQQFPQYQMPMWPQPPPNTWH-----PRKSSAPKRHNKTDQTQET 122
GP + H GP GLP Q Q Q P+ P H P SA + +
Sbjct: 306 GPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLP 365
Query: 123 QKPNQTQSKKPPQKRPL---------KQPSH-----------NQPQPE--------EEAQ 154
P KPP P+ K P H N P P
Sbjct: 366 PAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHH 425
Query: 155 PPQAFPPFGNGLFPYQQP----PWQIP-----QRLPPPGYGRPPISNEEGGNPYFGYFGY 205
PP A PP L P QP P Q P Q LPPP PP G
Sbjct: 426 PPSAHPP-PLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT-------------GL 471
Query: 206 HGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGN 265
H +PP+ P PP S T P T S QP G+
Sbjct: 472 HQVAPQPPFAQHPFVPGG---PPPITPPTCPSTSTPPAGPGT-----SAQPPCSGAAASG 523
Query: 266 DTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYPNI 325
+ G+S PLP V + ++ P P P R P P +
Sbjct: 524 GSIAGGSSC----------------PLPTVQIKEEALDDAEEPESPPPPP-RSPSPEPTV 566
Query: 326 RNFPS 330
+ PS
Sbjct: 567 VDTPS 571
Score = 42.0 bits (97), Expect = 0.003
Identities = 48/174 (27%), Positives = 64/174 (36%), Gaps = 23/174 (13%)
Query: 97 PPPNTWHPRKSSA----PKRHNKTDQTQETQKPNQTQSKKPP---QKRPLKQPSHNQPQP 149
PPP P S + P H Q +P + +PP Q + L P + P
Sbjct: 410 PPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT 469
Query: 150 ---EEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYG---RPPISNEEGGNPYFGYF 203
+ QPP A PF G P PP PP G G +PP S
Sbjct: 470 GLHQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAASG------ 523
Query: 204 GYHGFGGRPPYYSEEMFEQ---DFEKPKEEDPPKAESPGTEPTANSTVTETNST 254
G G P + ++ E+ D E+P E PP SP EPT T + + +
Sbjct: 524 GSIAGGSSCPLPTVQIKEEALDDAEEP-ESPPPPPRSPSPEPTVVDTPSHASQS 576
Score = 35.8 bits (81), Expect = 0.24
Identities = 56/244 (22%), Positives = 76/244 (31%), Gaps = 30/244 (12%)
Query: 82 LPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQ 141
L Q P Q P P P++ P P T P + + PPQ P
Sbjct: 180 LQAQPPALQAPTGVTPAPSSAPPGTPQLP-----------TPGPTPSATAVPPQGSPTAS 228
Query: 142 PSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEG--GNPY 199
+ NQPQ A P L P Q+PP P P P P++ G P
Sbjct: 229 QAPNQPQ-APTAPVPHTHIQQAPALHP-QRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPS 286
Query: 200 FGYFGYHGFGGRPPYYSEE-MFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNP 258
HG G P+ + Q P+ P S G P S T
Sbjct: 287 HAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQL 346
Query: 259 KGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRE 318
SQ + PP + + P P + P + IP P+ P +
Sbjct: 347 PASQSALQS-------------QQPPREQPLPPAPLAMPHIKPPPTTPIPQLPA-PQAHK 392
Query: 319 NHPY 322
+ P+
Sbjct: 393 HPPH 396
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 48.5 bits (114), Expect = 4e-05
Identities = 76/305 (24%), Positives = 91/305 (29%), Gaps = 81/305 (26%)
Query: 68 GPHMAHLGPFFGNGLPQQFPQYQMPMWPQPPPNTWH-----PRKSSAPKRHNKTDQTQET 122
GP + H GP GLP Q Q Q P+ P H P SA + +
Sbjct: 860 GPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLP 919
Query: 123 QKPNQTQSKKPPQKRPL---------KQPSH-----------NQPQPE--------EEAQ 154
P KPP P+ K P H N P P
Sbjct: 920 PAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHH 979
Query: 155 PPQAFPPFGNGLFPYQQP----PWQIP-----QRLPPPGYGRPPISNEEGGNPYFGYFGY 205
PP A PP L P QP P Q P Q LPPP PP G
Sbjct: 980 PPSAHPP-PLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT-------------GL 1025
Query: 206 HGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGN 265
H +PP+ P PP S T P T S QP G+
Sbjct: 1026 HQVAPQPPFAQHPFVPGG---PPPITPPTCPSTSTPPAGPGT-----SAQPPCSGAAASG 1077
Query: 266 DTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYPNI 325
+ G+S PLP V + ++ P P P R P P +
Sbjct: 1078 GSIAGGSSC----------------PLPTVQIKEEALDDAEEPESPPPPP-RSPSPEPTV 1120
Query: 326 RNFPS 330
+ PS
Sbjct: 1121 VDTPS 1125
Score = 42.0 bits (97), Expect = 0.003
Identities = 48/174 (27%), Positives = 64/174 (36%), Gaps = 23/174 (13%)
Query: 97 PPPNTWHPRKSSA----PKRHNKTDQTQETQKPNQTQSKKPP---QKRPLKQPSHNQPQP 149
PPP P S + P H Q +P + +PP Q + L P + P
Sbjct: 964 PPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT 1023
Query: 150 ---EEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYG---RPPISNEEGGNPYFGYF 203
+ QPP A PF G P PP PP G G +PP S
Sbjct: 1024 GLHQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAASG------ 1077
Query: 204 GYHGFGGRPPYYSEEMFEQ---DFEKPKEEDPPKAESPGTEPTANSTVTETNST 254
G G P + ++ E+ D E+P E PP SP EPT T + + +
Sbjct: 1078 GSIAGGSSCPLPTVQIKEEALDDAEEP-ESPPPPPRSPSPEPTVVDTPSHASQS 1130
Score = 35.8 bits (81), Expect = 0.24
Identities = 56/244 (22%), Positives = 76/244 (31%), Gaps = 30/244 (12%)
Query: 82 LPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQ 141
L Q P Q P P P++ P P T P + + PPQ P
Sbjct: 734 LQAQPPALQAPTGVTPAPSSAPPGTPQLP-----------TPGPTPSATAVPPQGSPTAS 782
Query: 142 PSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEG--GNPY 199
+ NQPQ A P L P Q+PP P P P P++ G P
Sbjct: 783 QAPNQPQ-APTAPVPHTHIQQAPALHP-QRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPS 840
Query: 200 FGYFGYHGFGGRPPYYSEE-MFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNP 258
HG G P+ + Q P+ P S G P S T
Sbjct: 841 HAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQL 900
Query: 259 KGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRE 318
SQ + PP + + P P + P + IP P+ P +
Sbjct: 901 PASQSALQS-------------QQPPREQPLPPAPLAMPHIKPPPTTPIPQLPA-PQAHK 946
Query: 319 NHPY 322
+ P+
Sbjct: 947 HPPH 950
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 48.5 bits (114), Expect = 4e-05
Identities = 76/305 (24%), Positives = 91/305 (29%), Gaps = 81/305 (26%)
Query: 68 GPHMAHLGPFFGNGLPQQFPQYQMPMWPQPPPNTWH-----PRKSSAPKRHNKTDQTQET 122
GP + H GP GLP Q Q Q P+ P H P SA + +
Sbjct: 860 GPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLP 919
Query: 123 QKPNQTQSKKPPQKRPL---------KQPSH-----------NQPQPE--------EEAQ 154
P KPP P+ K P H N P P
Sbjct: 920 PAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHH 979
Query: 155 PPQAFPPFGNGLFPYQQP----PWQIP-----QRLPPPGYGRPPISNEEGGNPYFGYFGY 205
PP A PP L P QP P Q P Q LPPP PP G
Sbjct: 980 PPSAHPP-PLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT-------------GL 1025
Query: 206 HGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGN 265
H +PP+ P PP S T P T S QP G+
Sbjct: 1026 HQVAPQPPFAQHPFVPGG---PPPITPPTCPSTSTPPAGPGT-----SAQPPCSGAAASG 1077
Query: 266 DTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYPNI 325
+ G+S PLP V + ++ P P P R P P +
Sbjct: 1078 GSIAGGSSC----------------PLPTVQIKEEALDDAEEPESPPPPP-RSPSPEPTV 1120
Query: 326 RNFPS 330
+ PS
Sbjct: 1121 VDTPS 1125
Score = 42.0 bits (97), Expect = 0.003
Identities = 48/174 (27%), Positives = 64/174 (36%), Gaps = 23/174 (13%)
Query: 97 PPPNTWHPRKSSA----PKRHNKTDQTQETQKPNQTQSKKPP---QKRPLKQPSHNQPQP 149
PPP P S + P H Q +P + +PP Q + L P + P
Sbjct: 964 PPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT 1023
Query: 150 ---EEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYG---RPPISNEEGGNPYFGYF 203
+ QPP A PF G P PP PP G G +PP S
Sbjct: 1024 GLHQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAASG------ 1077
Query: 204 GYHGFGGRPPYYSEEMFEQ---DFEKPKEEDPPKAESPGTEPTANSTVTETNST 254
G G P + ++ E+ D E+P E PP SP EPT T + + +
Sbjct: 1078 GSIAGGSSCPLPTVQIKEEALDDAEEP-ESPPPPPRSPSPEPTVVDTPSHASQS 1130
Score = 35.8 bits (81), Expect = 0.24
Identities = 56/244 (22%), Positives = 76/244 (31%), Gaps = 30/244 (12%)
Query: 82 LPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQ 141
L Q P Q P P P++ P P T P + + PPQ P
Sbjct: 734 LQAQPPALQAPTGVTPAPSSAPPGTPQLP-----------TPGPTPSATAVPPQGSPTAS 782
Query: 142 PSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEG--GNPY 199
+ NQPQ A P L P Q+PP P P P P++ G P
Sbjct: 783 QAPNQPQ-APTAPVPHTHIQQAPALHP-QRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPS 840
Query: 200 FGYFGYHGFGGRPPYYSEE-MFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNP 258
HG G P+ + Q P+ P S G P S T
Sbjct: 841 HAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQL 900
Query: 259 KGSQGGNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRE 318
SQ + PP + + P P + P + IP P+ P +
Sbjct: 901 PASQSALQS-------------QQPPREQPLPPAPLAMPHIKPPPTTPIPQLPA-PQAHK 946
Query: 319 NHPY 322
+ P+
Sbjct: 947 HPPH 950
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 48.1 bits (113), Expect = 5e-05
Identities = 84/377 (22%), Positives = 125/377 (33%), Gaps = 80/377 (21%)
Query: 92 PMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQPQPEE 151
P+ PQ P + P + + E KP S +PP+ P+ + P P
Sbjct: 153 PLEPQKPGSVVSPELQTPLP-------SPEPSKPASVSSPEPPKSVPVCESQKLAPVPSP 205
Query: 152 EAQPPQAFPP------FGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGY 205
E Q P P N P Q P+ L PP P S +P
Sbjct: 206 EPQKPAPVSPESVKATLSN---PKPQKQSHFPETLGPPSASSPE-SPVLAASP------- 254
Query: 206 HGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGN 265
+G P E P+ P +ESP EP +P P S G
Sbjct: 255 EPWGPSPAASPESRKSARTTSPEPRKPSPSESP--EPWKPFPAVSPEPRRPAPAVSPGSW 312
Query: 266 DTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIREN----HP 321
P G+ P +NP A +G PW+P++P + P
Sbjct: 313 KPGPPGSPRP---WKSNPSASSG-------------------PWKPAKPAPSVSPGPWKP 350
Query: 322 YPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFFAWERKQVARPGNPVYHK 381
P++ P W T +V + +++ V +W+ + P +P K
Sbjct: 351 IPSVSPGP----WKPTPSV-----SSASWKSSSVSPS------SWK----SPPASPESWK 391
Query: 382 AYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPLGPKPGPVVRNEKIQNPKEKPL 441
+ PP R P +P + + P PV + GP P +R+ KP
Sbjct: 392 SGPPELRKTAPTL--SPEHWKAVP------PVSPELRKPGPPLSPEIRSPAGSPELRKPS 443
Query: 442 G-PKEQIIVPTKNPTSP 457
G P + P + TSP
Sbjct: 444 GSPDLWKLSPDQRKTSP 460
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 47.4 bits (111), Expect = 8e-05
Identities = 36/128 (28%), Positives = 49/128 (38%), Gaps = 10/128 (7%)
Query: 81 GLPQQFPQYQMPMWPQPPPNTWHPRK--------SSAPKRHNKTDQTQETQKPNQTQSKK 132
G P++ P +PPP P + S P H + Q+ N+++S +
Sbjct: 118 GKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSAR 177
Query: 133 PPQKRPLKQPSH--NQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPI 190
P +P P N+PQ PQ PP G Q PP PQ PPP G P
Sbjct: 178 SPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPPPPPQGGRPP 237
Query: 191 SNEEGGNP 198
+G P
Sbjct: 238 RPAQGQQP 245
Score = 46.6 bits (109), Expect = 1e-04
Identities = 60/231 (25%), Positives = 72/231 (31%), Gaps = 46/231 (19%)
Query: 92 PMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSH--NQPQ- 148
P P PPP Q Q NQ+Q PP +P +P NQ Q
Sbjct: 47 PQRPPPPPGK---------------PQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQG 91
Query: 149 PEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGR-----PPISNEEGGNPYFGYF 203
P P+ PP G PP P+R PP G + PP E P G
Sbjct: 92 PPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGG-- 149
Query: 204 GYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQG 263
+ G PP+ P K E P + S + +P Q
Sbjct: 150 --NQSQGPPPH-----------------PGKPEGPPPQEGNKSRSARSPPGKPQGPPQQE 190
Query: 264 GNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQP 314
GN P G PG G P N P QG P RP +P
Sbjct: 191 GN--KPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPPPPPQGGRPPRP 239
Score = 36.2 bits (82), Expect = 0.18
Identities = 55/213 (25%), Positives = 65/213 (30%), Gaps = 53/213 (24%)
Query: 253 STQPNPKGSQGGNDTS--------PTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPG 304
S +P + QGGN P G G N PP G QGG
Sbjct: 33 SGKPEGRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPG----KPEGRPPQGGNQ 88
Query: 305 SQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFYRNQQVQRGPRWNFF 364
SQ P P P E P G Q T G + P Q R P
Sbjct: 89 SQGP--PPHPGKPERPPPQG------GNQSQGTPPPPGKPERPPPQGGNQSHRPP----- 135
Query: 365 AWERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPLGPKP 424
PG P PP GN + QGP HP P GP P
Sbjct: 136 -------PPPGKP----ERPPPQGGN-------------QSQGPPPHPG----KPEGPPP 167
Query: 425 GPVVRNEKIQNPKEKPLGPKEQIIVPTKNPTSP 457
++ ++P KP GP +Q + P P
Sbjct: 168 QEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPP 200
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 47.4 bits (111), Expect = 8e-05
Identities = 66/275 (24%), Positives = 106/275 (38%), Gaps = 45/275 (16%)
Query: 419 PLGPKPGPVVRNEKIQNPKEKPL-----GPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKL 473
P+ P PGP + +K Q K + L GP + + ++P + V +Y +
Sbjct: 106 PMPPPPGPALSYQKQQQYKHQMLHHQRDGPPGLVPMELESP------PESPPVPPGSY-M 158
Query: 474 PHSEGYMPVPNFNSVDQHENSYYPRGDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESET 533
P S+ YMP P Q SYYP S+ + SQ+ P L P S +
Sbjct: 159 PPSQSYMPPP------QPPPSYYPPTSSQPYLPPAQPSPSQSPPSQSYLAP--TPSYSSS 210
Query: 534 NQSELKHSSYQPAVYPEEIPSPAKEHFPAGRNTWDHQEISPPFKEDPGRQE--EHLPHPS 591
+ S + S+ + P SP++ P+ ++ PP PG + + P S
Sbjct: 211 SSSSQSYLSHSQSYLPSSQASPSR---PSQGHSKSQLLAPPPPSAPPGNKTTVQQEPLES 267
Query: 592 HGSRGSVFYPEYNPY-DPRENSPYLRGNTWD-------ERDDSPNTMGQKESPLYPINTP 643
S + P DP +P + W ++ + G K+ P+ +TP
Sbjct: 268 GAKNKSTEQQQAAPEPDPSTMTPQEQQQYWYRQHLLSLQQRTKVHLPGHKKGPVVAKDTP 327
Query: 644 DQ-KEIV-----------PYNEEDPVDPTGDEVFP 666
+ KE V P +EE P+ P +EV P
Sbjct: 328 EPVKEEVTVPATSQVPESPSSEEPPLPPPNEEVPP 362
Score = 42.0 bits (97), Expect = 0.003
Identities = 53/205 (25%), Positives = 70/205 (34%), Gaps = 32/205 (15%)
Query: 113 HNKTDQTQETQKPNQTQSKKPPQKRPLKQPS----HNQPQPEEEAQPPQAFPPFGNGLFP 168
H K Q+ +K N Q+ K + P ++Q P PP PP L P
Sbjct: 488 HMKATQSYLQEKVNSFQNMKNQYMGNMSMPPPFVPYSQMPPPLPTMPPPVLPP---SLPP 544
Query: 169 YQQPPWQIPQRLPPPGYGRP--PISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEK 226
PP +P +PPPG P P S P G PP S
Sbjct: 545 PVMPP-ALPATVPPPGMPPPVMPPSLPTSVPP----------PGMPPSLSSA------GP 587
Query: 227 PKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQ 286
P PP S G P + + P + T P G PG+ G P Q
Sbjct: 588 PPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVMPLPPLSSATPPPGIPPPGVPQG--IPPQ 645
Query: 287 NGIGPLPAVNASGQGGPGSQIPWRP 311
P+P ++S SQ+P +P
Sbjct: 646 LTAAPVPPASSS----QSSQVPEKP 666
Score = 36.6 bits (83), Expect = 0.14
Identities = 56/252 (22%), Positives = 79/252 (31%), Gaps = 38/252 (15%)
Query: 38 VAMPMHMPRMPGFSSKSEEMMRYNQ-FNFMNGPHMAHLGPFFGNGLPQQFPQYQM----- 91
VA+P P PG+SS + + F H+A L QQ Q QM
Sbjct: 25 VALPEASPG-PGYSSSTTPAAPSSSGFMSFREQHLAQLQQL------QQMHQKQMQCVLQ 77
Query: 92 ----PMWPQPPP--------NTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPL 139
P P PPP W P P Q+ Q+ P
Sbjct: 78 PHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPG 137
Query: 140 KQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPG---YGRPPISNEEGG 196
P + PE PP ++ P P QPP P PP Y P +
Sbjct: 138 LVPMELESPPESPPVPPGSYMPPSQSYMPPPQPP---PSYYPPTSSQPYLPPAQPSPSQS 194
Query: 197 NPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQP 256
P Y P Y S Q + + P +++ + P+ +++ P
Sbjct: 195 PPSQSY-----LAPTPSYSSSSSSSQSYLSHSQSYLPSSQASPSRPSQGH--SKSQLLAP 247
Query: 257 NPKGSQGGNDTS 268
P + GN T+
Sbjct: 248 PPPSAPPGNKTT 259
Score = 33.1 bits (74), Expect = 1.5
Identities = 40/188 (21%), Positives = 63/188 (33%), Gaps = 16/188 (8%)
Query: 92 PMWPQPPPNTWHPRKSSAPKR--HNKTDQT-----QETQKPNQTQSKKPPQKRPLKQPSH 144
PM P P P + ++ + H++ D E + P ++ P P Q
Sbjct: 106 PMPPPPGPALSYQKQQQYKHQMLHHQRDGPPGLVPMELESPPESPPVPPGSYMPPSQSYM 165
Query: 145 NQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPP-GYGRPPISNEEGGNPYFGYF 203
PQP PP +PP + PY P P + PP Y P S + Y
Sbjct: 166 PPPQP-----PPSYYPPTSSQ--PYLPPAQPSPSQSPPSQSYLAPTPSYSSSSSSSQSYL 218
Query: 204 GYHGFGGRPPYYSEEMFEQDFEKPKE-EDPPKAESPGTEPTANSTVTETNSTQPNPKGSQ 262
+ S Q K + PP + PG + T E+ + + + Q
Sbjct: 219 SHSQSYLPSSQASPSRPSQGHSKSQLLAPPPPSAPPGNKTTVQQEPLESGAKNKSTEQQQ 278
Query: 263 GGNDTSPT 270
+ P+
Sbjct: 279 AAPEPDPS 286
Score = 31.2 bits (69), Expect = 5.9
Identities = 54/242 (22%), Positives = 82/242 (33%), Gaps = 34/242 (14%)
Query: 537 ELKHSSYQPAVYPEEIPSPAKEHFPA--GRNTWDHQEISPPFKEDPG--------RQEEH 586
++ Q + P +P P P G D Q PP PG +Q +H
Sbjct: 66 QMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQYKH 125
Query: 587 --LPHPSHGSRGSVFYPEYNPYDPRENSPYLRGNTWDERDDSPNTMGQKESPLYPINTPD 644
L H G G V P E+ P G+ P + P P +
Sbjct: 126 QMLHHQRDGPPGLV---PMELESPPESPPVPPGSYM------PPSQSYMPPPQPPPSYYP 176
Query: 645 QKEIVPYNEEDPVDPTGDEVFPGQNRWGEELSFKGGPTVRHYEGEQYTSNQPKEYLPYSL 704
PY P P+ + P Q+ S+ + + Y S+ + YLP S
Sbjct: 177 PTSSQPYLP--PAQPSPSQSPPSQSYLAPTPSYSSSSS----SSQSYLSHS-QSYLPSSQ 229
Query: 705 DNPSKPREDFYYSEFYPWSPDENFPSYNTASTMPPPIESRGYYVNN-----AAGPEESTL 759
+PS+P + S+ P + P N + P+ES + A P+ ST+
Sbjct: 230 ASPSRPSQGHSKSQLLA-PPPPSAPPGNKTTVQQEPLESGAKNKSTEQQQAAPEPDPSTM 288
Query: 760 FP 761
P
Sbjct: 289 TP 290
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 47.0 bits (110), Expect = 1e-04
Identities = 98/426 (23%), Positives = 145/426 (34%), Gaps = 91/426 (21%)
Query: 81 GLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPN------------QT 128
GLP P P+ P PPP P P T + KP +
Sbjct: 239 GLPPGLPLPPPPLPPPPPP----PPPPPPPLPGLATSPPFQLTKPGLWSTLHGDAWGPER 294
Query: 129 QSKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYG-R 187
+ PP++ ++ H+ P P P P G+ L P PPG G R
Sbjct: 295 KGSAPPER---QEQRHSLPHPYPYPAPAYTAHPPGHRLVP-----------AAPPGPGPR 340
Query: 188 PPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEED--PPKAE------SPG 239
PP + G P RPP ++ E ++ + + P A +P
Sbjct: 341 PPGAESHGCLP----------ATRPP--GSDLRESRVQRSRMDSSVSPAATTACVPYAPS 388
Query: 240 TEPTANSTVTETNSTQPNPKGSQG--GNDTSPTGN--STPGLNTGNN----PPAQNGIGP 291
P T T ++S+ + G +G N P + TP L ++ P A + P
Sbjct: 389 RPPGLPGTTTSSSSSSSSNTGLRGVEPNPGIPGADHYQTPALEVSHHGRLGPSAHSSRKP 448
Query: 292 L---PAVNASGQGGPGSQIPWRPSQPNIRENHPYPNIRNFPSGR---------QWYFTGT 339
PA PG P P P + P P P+ R + F GT
Sbjct: 449 FLGAPAATPHLSLPPGPSSPPPPPCPRLLRPPPPPAWLKGPACRAAREDGEILEELFFGT 508
Query: 340 VMGHRQNRPFYRNQQVQRGPRWNFFAWERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPA 399
R P +++ GP + F+ + P P P TS N N
Sbjct: 509 EGPPRPAPPPLPHREGFLGPPASRFSVGTQDSHTPPTP----PTPTTSSSN-----SNSG 559
Query: 400 NLRRKPQGPNKHP----VGTTVAPLGPKPGPVVRNEKIQNPKEKPLGPKEQIIVPTKNPT 455
+ P GP P + ++ PL P P QNP++ PL P + +P P+
Sbjct: 560 SHSSSPAGPVSFPPPPYLARSIDPLPRPPSPA------QNPQDPPLVPL-TLALPPAPPS 612
Query: 456 SPWRNS 461
S +N+
Sbjct: 613 SCHQNT 618
Score = 33.5 bits (75), Expect = 1.2
Identities = 53/246 (21%), Positives = 77/246 (31%), Gaps = 59/246 (23%)
Query: 88 QYQMPMWPQPP------------PNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQ 135
Q++ + PQPP P P ++ T T T Q + KKPP
Sbjct: 714 QHEAGVAPQPPLKEPFASLQSPFPTDTAPTTTAPAVAVTTTTTTTTTTTATQEEEKKPPP 773
Query: 136 KRPLKQPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEG 195
P P P P + PP PP P P +++
Sbjct: 774 ALPPPPPLAKFPPPSQPQPPPP--PP-------------------PSPASLLKSLASVLE 812
Query: 196 GNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQ 255
G Y Y G G + P SPG P + +T S
Sbjct: 813 GQKYC----YRGTGAAVSTRPGPL------------PTTQYSPG--PPSGATALPPTSAA 854
Query: 256 PNPKGSQGGNDTSPTGNSTPGLNTGNNPPAQN---GIGPLPAVNASGQGGPGSQIPWRPS 312
P+ +GS P+ +S+ +T P A+ G P+P Q P +P S
Sbjct: 855 PSAQGS-----PQPSASSSSQFSTSGGPWARERRAGEEPVPGPMTPTQPPPPLSLPPARS 909
Query: 313 QPNIRE 318
+ + E
Sbjct: 910 ESEVLE 915
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 46.6 bits (109), Expect = 1e-04
Identities = 49/161 (30%), Positives = 60/161 (37%), Gaps = 20/161 (12%)
Query: 155 PPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFGGRP-P 213
PP P G FP QP + + LP GR ++ G G G G G P
Sbjct: 478 PPGPQGPPGEIGFP-GQPGAKGDRGLP----GRDGVAGVPGPQGTPGLIGQPGAKGEPGE 532
Query: 214 YYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQG-----GNDTS 268
+Y + + D + DP PG A S + + P PKGS G G
Sbjct: 533 FYFDLRLKGD-----KGDPGFPGQPGMTGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGP 587
Query: 269 PTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQ----GGPGS 305
P G PG PP G GP + GQ GGPGS
Sbjct: 588 PGGVGFPGSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGS 628
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 46.6 bits (109), Expect = 1e-04
Identities = 51/252 (20%), Positives = 87/252 (34%), Gaps = 33/252 (13%)
Query: 87 PQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQ 146
P + P+ P P + P +P ++ + P ++ PP++ P+ P
Sbjct: 530 PALETPLSPPPEASPLSPPFEESPLSP-PPEELPTSPPPEASRLSPPPEESPMSPPPEES 588
Query: 147 PQPEEEAQPPQA---FPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYF 203
P + PP+A FPPF P PP + P PP P + +P
Sbjct: 589 PM----SPPPEASRLFPPFEES--PLSPPPEESPLSPPPEASRLSPPPEDSPMSP----- 637
Query: 204 GYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQG 263
PP S + + SP E + S E + T P P+ S+
Sbjct: 638 --------PPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPTSPPPEASRL 689
Query: 264 GNDTSPTGNSTPGLNTGNNPPAQNGIG----------PLPAVNASGQGGPGSQIPWRPSQ 313
+ S P ++ +PP ++ + PLP G + RP +
Sbjct: 690 SPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEESPLLPLPEEPQLCPRSEGPHLSPRPEE 749
Query: 314 PNIRENHPYPNI 325
P++ P++
Sbjct: 750 PHLSPRPEEPHL 761
Score = 45.1 bits (105), Expect = 4e-04
Identities = 50/237 (21%), Positives = 85/237 (35%), Gaps = 19/237 (8%)
Query: 90 QMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQPQP 149
+MP+ P P + P +P + ++ + P + + P+ L +P P
Sbjct: 437 EMPLLPPPEESPLSPPPEESPTSP-PPEASRLSPPPEELPASPLPEALHLSRPLEESPLS 495
Query: 150 EEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFG 209
+ P + PP + P ++ P P+ PP P+S +P
Sbjct: 496 PPPEESPLSPPPESSPFSPLEESPLSPPEESPPSPALETPLSPPPEASPL---------- 545
Query: 210 GRPPYYSEEMFEQDFEKPKEEDPPKAE--SPGTEPTANSTVTETNSTQPNPKGSQGGNDT 267
PP+ + E P PP+A SP E + S E + P P+ S+
Sbjct: 546 -SPPFEESPLSPPPEELP-TSPPPEASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPF 603
Query: 268 SPTGNSTPGLNTGNNPPAQ-NGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYP 323
+ S P + +PP + + + P P S P + P P P + P P
Sbjct: 604 EESPLSPPPEESPLSPPPEASRLSPPP--EDSPMSPPPEESPMSP-PPEVSRLSPLP 657
Score = 36.2 bits (82), Expect = 0.18
Identities = 52/196 (26%), Positives = 70/196 (35%), Gaps = 52/196 (26%)
Query: 549 PEEIP-SPAKEHFPAGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGSRGSVFYPEYNPYD 607
PEE+P SP E R + +SPP +E P L P PE +P+
Sbjct: 471 PEELPASPLPEALHLSRPL-EESPLSPPPEESP------LSPP----------PESSPFS 513
Query: 608 PRENSPYLRGNTWDERDDSPNTMGQKESPLYPINTPDQKEIVPYNEEDPVDPTGDEVFPG 667
P E SP + +E SP E+PL P P+ + P EE P+ P +E+
Sbjct: 514 PLEESPL---SPPEESPPSP----ALETPLSP--PPEASPLSPPFEESPLSPPPEEL--- 561
Query: 668 QNRWGEELSFKGGPTVRHYEGEQYTSNQPKEYLPYSLDNPSKPREDFYYSEFYPWSPDEN 727
PT E + + P E P S P P
Sbjct: 562 -------------PTSPPPEASRL--SPPPEESPMSPPPEESPMSP-------PPEASRL 599
Query: 728 FPSYNTASTMPPPIES 743
FP + + PPP ES
Sbjct: 600 FPPFEESPLSPPPEES 615
Score = 35.4 bits (80), Expect = 0.31
Identities = 90/420 (21%), Positives = 140/420 (33%), Gaps = 52/420 (12%)
Query: 82 LPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQ 141
L QQ Q + Q ++ ++ + Q Q+ Q+ Q Q ++ Q+ L
Sbjct: 3920 LQQQQQLQQQQLQQQQQQQQLQQQQQQQLQQQQQQLQQQQQQQQQQFQQQQQQQQMGLLN 3979
Query: 142 PSHNQPQPEEEAQPPQAFPPFGNGLFPYQQ--PPWQIPQRLPPPGYGR----PPISNEEG 195
S P+++ Q A P G P Q P + L G + P +S+E
Sbjct: 3980 QSRTLLSPQQQQQQQVALGP-GMPAKPLQHFSSPGALGPTLLLTGKEQNTVDPAVSSEAT 4038
Query: 196 GNPYFGYFGYHGFGGRPPYYSEEMFE--------------QDFEKPKEED---PPKAESP 238
P G G P + E E Q +P+ P P
Sbjct: 4039 EGPSTHQGGPLAIGTTPESMATEPGEVKPSLSGDSQLLLVQPQPQPQPSSLQLQPPLRLP 4098
Query: 239 GTEPTANSTVTETNSTQPNPKGSQGGNDTSPTGN--STPGLNTGNNPPA--QNGIGPL-P 293
G + S + GS ++ S + + P ++ G+ P + QN +GP P
Sbjct: 4099 GQQQQQVSLLHTAGGGSHGQLGSGSSSEASSVPHLLAQPSVSLGDQPGSMTQNLLGPQQP 4158
Query: 294 AVNASGQGGPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQW--YFTGTVMGHRQNRPFYR 351
+ Q G Q P +P P ++ P + P+ Q G + + Q R
Sbjct: 4159 MLERPMQNNTGPQPP-KPG-PVLQSGQGLPGVGIMPTVGQLRAQLQGVLAKNPQLRHLSP 4216
Query: 352 NQQVQRGPRWNFFAWERKQVARPGNPVYHKAYPPTSR-----GNYPNYAGNPA------- 399
QQ Q ++ Q R P Y + TS G P G P
Sbjct: 4217 QQQQQLQALLMQRQLQQSQAVRQ-TPPYQEPGTQTSPLQGLLGCQPQLGGFPGPQTGPLQ 4275
Query: 400 --NLRRKPQGPNKHPVGTTVAPLGPKPGPVVRNEKIQNPKEKPLGPKEQIIVPTKNPTSP 457
+PQGP + P GP GPV +P+E PK +P+ + P
Sbjct: 4276 ELGAGPRPQGPPRLPAPPGALSTGPVLGPVHPTPPPSSPQE----PKRPSQLPSPSSQLP 4331
Score = 33.1 bits (74), Expect = 1.5
Identities = 40/149 (26%), Positives = 56/149 (37%), Gaps = 22/149 (14%)
Query: 152 EAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFGGR 211
E PPQ P + L P PP Q PP P+S +P G+
Sbjct: 1018 EPLPPQCSPLLQHSLVPQNSPPSQ----CSPPAL---PLSVPSPLSPI----------GK 1060
Query: 212 PPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTET--NSTQPNPKGSQGGNDTSP 269
S+E + E K +P E P EP+A S + + + P P + +D S
Sbjct: 1061 VVGVSDEAELHEMETEKVSEP---ECPALEPSATSPLPSPMGDLSCPAPSPAPALDDFSG 1117
Query: 270 TGNSTPGLNTGNNPPAQNGIGPLPAVNAS 298
G T L+ + P +Q G P AS
Sbjct: 1118 LGEDTAPLDGIDAPGSQPEPGQTPGSLAS 1146
Score = 32.7 bits (73), Expect = 2.0
Identities = 58/227 (25%), Positives = 72/227 (31%), Gaps = 40/227 (17%)
Query: 95 PQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSK------KPPQKRPLKQPSHNQPQ 148
P P P S P+ + + Q +E Q + + P P + H PQ
Sbjct: 741 PHLSPRPEEPHLSPRPEEPHLSPQAEEPHLSPQPEEPCLCAVPEEPHLSPQAEGPHLSPQ 800
Query: 149 PEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGYHGF 208
PEE PQ P L P + P PQ P P S E +P
Sbjct: 801 PEELHLSPQTEEPH---LSPVPEEPCLSPQ---PEESHLSPQSEEPCLSP---------- 844
Query: 209 GGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTS 268
RP E + EKP P+ E P EP E P P G S
Sbjct: 845 --RP---EESHLSPELEKPPLS--PRPEKPPEEP-GQCPAPEELPLFPPP----GEPSLS 892
Query: 269 PTGNSTPGLNTGNNPPAQNGIGPLP-AVNASGQGGPGSQIPWRPSQP 314
P P L+ PP + PLP + S G P P P
Sbjct: 893 PL-LGEPALSEPGEPP----LSPLPEELPLSPSGEPSLSPQLMPPDP 934
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 46.6 bits (109), Expect = 1e-04
Identities = 58/263 (22%), Positives = 83/263 (31%), Gaps = 35/263 (13%)
Query: 61 NQFNFMNGPHMAHLGPFFGNGLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQ 120
NQ G H +G P + P P P P+ + P H +
Sbjct: 602 NQPQAAAGSHQLSMGQPHNAAGPSPHTLRRAVKKPAPAP----PKPGNPPPGHPGGQSSS 657
Query: 121 ETQKPNQTQSKKPPQKRPLKQPSHNQPQPEEEAQPPQAFPP--FGNGLFPYQ---QPPWQ 175
T + + S KPP + P H P + + P Q P + + L P Q PP Q
Sbjct: 658 GTSQHPPSLSPKPPTRSPSPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQ 717
Query: 176 IPQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKA 235
P + P + +P N +G PP E E+P P
Sbjct: 718 PPTQATPLMHTKP---NSQG----------------PPNPMALPSEHGLEQPSHTPPQTP 758
Query: 236 ESPGTEPTANSTVTETNSTQPNPKGSQGGN--DTSPTGNSTPGLNTGNNPPAQNGIGPLP 293
P T P + + N + P P+ GGN P + P P + + P P
Sbjct: 759 TPPSTPP-----LGKQNPSLPAPQTLAGGNPETAQPHAGTLPRPRPVPKPRNRPSVPPPP 813
Query: 294 AVNASGQGGPGSQIPWRPSQPNI 316
G S P+ I
Sbjct: 814 QPPGVHSAGDSSLTNTAPTASKI 836
Score = 46.6 bits (109), Expect = 1e-04
Identities = 50/176 (28%), Positives = 64/176 (36%), Gaps = 19/176 (10%)
Query: 96 QPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLKQPSHNQPQPEEEAQP 155
QPP P + SAP+R++ + Q PN + P Q PL N P
Sbjct: 684 QPPGQPSAPSQLSAPRRYSSS--LSPIQAPNHPPPQPPTQATPLMHTKPNSQGPPN---- 737
Query: 156 PQAFPPFGNGLFPYQQPPWQ-IPQRLPPPGYGRPPISNEE---GGNPYFGYFGYHGFGGR 211
P A P P PP P PP G P + + GGNP + G R
Sbjct: 738 PMALPSEHGLEQPSHTPPQTPTPPSTPPLGKQNPSLPAPQTLAGGNPETAQ-PHAGTLPR 796
Query: 212 PPYYSEEMFEQDFEKPKEEDPPKAESPG------TEPTANSTVTETNSTQPNPKGS 261
P + P + PP S G T PTA+ VT++NS P S
Sbjct: 797 PRPVPKPRNRPSVPPPPQ--PPGVHSAGDSSLTNTAPTASKIVTDSNSRVSEPHRS 850
Score = 41.2 bits (95), Expect = 0.006
Identities = 66/307 (21%), Positives = 92/307 (29%), Gaps = 65/307 (21%)
Query: 73 HLGPFFGNGLPQQFPQYQMPMWPQPPPNTWHPRKSS------------------------ 108
H+ P F LP +P P+PPP + SS
Sbjct: 518 HISPAFQPPLPPTDGSTVVPAGPEPPPQSSRAESSSGGGTVPSSAGILEQGPSPGDGSPP 577
Query: 109 -----------APKRHNKTDQTQETQ-------------KPNQTQSKKP-PQKRPLKQPS 143
AP R+N + + Q +P+ P +R +K+P+
Sbjct: 578 KPKDPVSAAVPAPGRNNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRRAVKKPA 637
Query: 144 HNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYF 203
P P + PP P + Q PP P+ PP P + G P G
Sbjct: 638 ---PAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPK---PPTRSPSPPTQHTGQPP--GQP 689
Query: 204 GYHGFGGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQG 263
P YS + PP +P NS P+ G +
Sbjct: 690 SAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTKPNSQGPPNPMALPSEHGLEQ 749
Query: 264 GNDTSPTGNSTPGLNTGNNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYP 323
+ T P + P + PP LPA G P + P + P R P P
Sbjct: 750 PSHTPPQTPTPP-----STPPLGKQNPSLPAPQTLAGGNPETAQPHAGTLPRPR---PVP 801
Query: 324 NIRNFPS 330
RN PS
Sbjct: 802 KPRNRPS 808
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,117,894
Number of Sequences: 37866
Number of extensions: 3892956
Number of successful extensions: 16774
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 596
Number of HSP's that attempted gapping in prelim test: 12635
Number of HSP's gapped (non-prelim): 3549
length of query: 1142
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1029
effective length of database: 13,968,660
effective search space: 14373751140
effective search space used: 14373751140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.