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Search of human proteins with 189303554
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|189303554 keratin associated protein 20-3 [Homo sapiens]
(44 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|189303554 keratin associated protein 20-3 [Homo sapiens] 107 2e-24
gi|31791022 keratin associated protein 19-5 [Homo sapiens] 51 2e-07
gi|149944573 keratin associated protein 19-8 [Homo sapiens] 51 2e-07
gi|31791018 keratin associated protein 19-7 [Homo sapiens] 47 4e-06
gi|31791026 keratin associated protein 19-3 [Homo sapiens] 46 6e-06
gi|31791028 keratin associated protein 19-4 [Homo sapiens] 46 7e-06
gi|31791040 keratin associated protein 6-2 [Homo sapiens] 45 1e-05
gi|31791014 keratin associated protein 20-2 [Homo sapiens] 43 6e-05
gi|31791024 keratin associated protein 19-6 [Homo sapiens] 42 1e-04
gi|31791030 keratin associated protein 19-1 [Homo sapiens] 41 2e-04
gi|31791038 keratin associated protein 6-1 [Homo sapiens] 41 2e-04
gi|153945796 keratin associated protein 6-3 [Homo sapiens] 40 4e-04
gi|31791020 keratin associated protein 20-1 [Homo sapiens] 39 7e-04
gi|169206147 PREDICTED: hypothetical protein [Homo sapiens] 38 0.002
gi|239750526 PREDICTED: hypothetical protein [Homo sapiens] 38 0.002
gi|169205935 PREDICTED: hypothetical protein [Homo sapiens] 38 0.002
gi|239744833 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010
gi|31791016 keratin associated protein 21-2 [Homo sapiens] 35 0.013
gi|31791010 keratin associated protein 21-1 [Homo sapiens] 32 0.11
gi|239757562 PREDICTED: similar to Keratin-associated protein 22... 32 0.14
gi|239752072 PREDICTED: hypothetical protein XP_002348098 [Homo ... 32 0.14
gi|239746569 PREDICTED: hypothetical protein XP_002343781 [Homo ... 32 0.14
gi|194018511 keratin 77 [Homo sapiens] 30 0.54
gi|31791012 keratin associated protein 22-1 [Homo sapiens] 28 1.6
gi|31791004 keratin associated protein 13-4 [Homo sapiens] 27 2.7
gi|4505487 occludin [Homo sapiens] 26 6.0
>gi|189303554 keratin associated protein 20-3 [Homo sapiens]
Length = 44
Score = 107 bits (267), Expect = 2e-24
Identities = 44/44 (100%), Positives = 44/44 (100%)
Query: 1 MSYYGNYYGGLGYGYDCKYSYTSGFGAFRILDCGYRCGCGGVWI 44
MSYYGNYYGGLGYGYDCKYSYTSGFGAFRILDCGYRCGCGGVWI
Sbjct: 1 MSYYGNYYGGLGYGYDCKYSYTSGFGAFRILDCGYRCGCGGVWI 44
>gi|31791022 keratin associated protein 19-5 [Homo sapiens]
Length = 72
Score = 51.2 bits (121), Expect = 2e-07
Identities = 27/45 (60%), Positives = 29/45 (64%), Gaps = 6/45 (13%)
Query: 1 MSYYGNYYGGLGYGY----DCKYSYTSGFGAFRILDCGYRCGCGG 41
M+YYGNYYGGLGYGY D Y Y G G+FR L GY G GG
Sbjct: 1 MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRL--GYGGGYGG 43
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 4 YGNYYGGLGYGYDCKYSYTSGFGAFRILDCGYRC 37
YG YGG GYG SGFG + C C
Sbjct: 37 YGGGYGGYGYG--------SGFGGYGYRSCRPSC 62
>gi|149944573 keratin associated protein 19-8 [Homo sapiens]
Length = 63
Score = 50.8 bits (120), Expect = 2e-07
Identities = 26/45 (57%), Positives = 29/45 (64%), Gaps = 6/45 (13%)
Query: 1 MSYYGNYYGGLGYGY----DCKYSYTSGFGAFRILDCGYRCGCGG 41
MSYY +YYGGLGYGY Y Y G+G+FR L GY CG GG
Sbjct: 1 MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRL--GYGCGYGG 43
>gi|31791018 keratin associated protein 19-7 [Homo sapiens]
Length = 63
Score = 46.6 bits (109), Expect = 4e-06
Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 1 MSYYGNYYGGLGYGY----DCKYSYTSGFGAFRILDCGYRCGCGG 41
MSY G+YYGGLGYG Y Y+ G G+FR L GY CG GG
Sbjct: 1 MSYSGSYYGGLGYGCGGFGGLGYGYSCGCGSFRRL--GYGCGYGG 43
>gi|31791026 keratin associated protein 19-3 [Homo sapiens]
Length = 81
Score = 46.2 bits (108), Expect = 6e-06
Identities = 25/45 (55%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 1 MSYYGNYYGGLGYGY----DCKYSYTSGFGAFRILDCGYRCGCGG 41
MSYYG+YYGGLGYG Y Y G G+FR L G CG GG
Sbjct: 1 MSYYGSYYGGLGYGCGGFGGLGYGYGCGCGSFRRLGSG--CGYGG 43
>gi|31791028 keratin associated protein 19-4 [Homo sapiens]
Length = 84
Score = 45.8 bits (107), Expect = 7e-06
Identities = 25/45 (55%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 1 MSYYGNYYGGLGYGY----DCKYSYTSGFGAFRILDCGYRCGCGG 41
MSYYG+YY GLGYG Y Y G G+FR L GY CG GG
Sbjct: 1 MSYYGSYYRGLGYGCGGFGGLGYGYGCGCGSFRRL--GYGCGFGG 43
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 4 YGNYYGGLGYGYDCKYSYTSGFGAFRIL 31
YG +GG GYGY C+ S G+G F IL
Sbjct: 37 YGCGFGGNGYGY-CRPSCYGGYG-FSIL 62
>gi|31791040 keratin associated protein 6-2 [Homo sapiens]
Length = 62
Score = 45.1 bits (105), Expect = 1e-05
Identities = 26/56 (46%), Positives = 28/56 (50%), Gaps = 17/56 (30%)
Query: 2 SYYGNYYG----------GLGYGYD---CKYS----YTSGFGAFRILDCGYRCGCG 40
SYYGNYYG GLGYGY C YS Y G+G+ CGY CG G
Sbjct: 4 SYYGNYYGDHGYGCCGYEGLGYGYGSLRCGYSSCCGYGHGYGSRFFCGCGYGCGSG 59
>gi|31791014 keratin associated protein 20-2 [Homo sapiens]
Length = 65
Score = 42.7 bits (99), Expect = 6e-05
Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 1 MSYYGNYYGGLGY-------GYDCKYSYTSGFGAFRILDCGYRCGCGG 41
M YY NYYGGL Y GY C Y G+G L CGY G GG
Sbjct: 1 MCYYSNYYGGLRYGYGVLGGGYGCGCGYGHGYGG---LGCGYGRGYGG 45
>gi|31791024 keratin associated protein 19-6 [Homo sapiens]
Length = 58
Score = 41.6 bits (96), Expect = 1e-04
Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 12/41 (29%)
Query: 1 MSYYGNYYGGLGYGYDCKYSYTSGFGAFRILDCGYRCGCGG 41
M YYG+YY GLGYG GFG GY CGCGG
Sbjct: 1 MRYYGSYYRGLGYG-------CGGFGGL-----GYGCGCGG 29
>gi|31791030 keratin associated protein 19-1 [Homo sapiens]
Length = 90
Score = 41.2 bits (95), Expect = 2e-04
Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 10/40 (25%)
Query: 1 MSYYGNYYGGLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
MS+YG+YYGGLGY GFG L GY CGCG
Sbjct: 1 MSHYGSYYGGLGYS-------CGGFGG---LGYGYGCGCG 30
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
Query: 4 YGNYYGGLGYGYD--------CKYSYTSGFG 26
YG+ +GG GYG C+ SY G+G
Sbjct: 55 YGSGFGGYGYGSGFGGYGYGCCRPSYNGGYG 85
>gi|31791038 keratin associated protein 6-1 [Homo sapiens]
Length = 71
Score = 40.8 bits (94), Expect = 2e-04
Identities = 23/42 (54%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 2 SYYGNYYGGLGYGYDCKYSYTS-GFGAFRILDCGYR--CGCG 40
SYYGNYYG GYG+ C Y G+G L CGY CGCG
Sbjct: 4 SYYGNYYGTPGYGF-CGYGGLGYGYGG---LGCGYGSCCGCG 41
>gi|153945796 keratin associated protein 6-3 [Homo sapiens]
Length = 110
Score = 40.0 bits (92), Expect = 4e-04
Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 9/44 (20%)
Query: 8 YGGLGYGY---DCKYSYTS-GFGAF-----RILDCGYRCGCGGV 42
YGGLG+GY DC Y G+G+F R LDCGY CG G V
Sbjct: 44 YGGLGFGYGGLDCGYGGLGCGYGSFCGCGYRGLDCGYGCGYGYV 87
Score = 36.2 bits (82), Expect = 0.006
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 2 SYYGNYYGGLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
S+ G Y GL GY C Y Y S CGYRCG G
Sbjct: 67 SFCGCGYRGLDCGYGCGYGYVS----HSFCGCGYRCGSG 101
>gi|31791020 keratin associated protein 20-1 [Homo sapiens]
Length = 56
Score = 39.3 bits (90), Expect = 7e-04
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 1 MSYYGNYYGGLGY-----GYDCKY-SYTSGFGAFRILDCGYRC 37
M YY NYYGG GY GY C Y Y G+G + GY C
Sbjct: 1 MIYYSNYYGGYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGYYC 43
>gi|169206147 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 37.7 bits (86), Expect = 0.002
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 4 YGNYYG-GLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
YG+ YG G G GY C Y SG G CGY CG G
Sbjct: 28 YGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCGYG 65
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 2 SYYGNYYG-------GLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
+YYGN G G G GY C Y + G G CGY G G
Sbjct: 4 NYYGNSCGYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSG 49
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 3 YYGNYYGGLGYGYDCKY--SYTSGFGAFRILDCGYRCGCG 40
Y Y G G GY Y Y G+G GY CGCG
Sbjct: 40 YSCGYGSGSGCGYGTGYGCGYGCGYGT------GYGCGCG 73
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 4 YGNYYG-GLGYGYDCKYSYTSGFGAFRILDCGYRCGC 39
YG YG G G GY C SG+ CGYR C
Sbjct: 56 YGCGYGCGYGTGYGCGCGSGSGY-------CGYRPFC 85
>gi|239750526 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 37.7 bits (86), Expect = 0.002
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 4 YGNYYG-GLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
YG+ YG G G GY C Y SG G CGY CG G
Sbjct: 28 YGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCGYG 65
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 2 SYYGNYYG-------GLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
+YYGN G G G GY C Y + G G CGY G G
Sbjct: 4 NYYGNSCGYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSG 49
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 3 YYGNYYGGLGYGYDCKY--SYTSGFGAFRILDCGYRCGCG 40
Y Y G G GY Y Y G+G GY CGCG
Sbjct: 40 YSCGYGSGSGCGYGTGYGCGYGCGYGT------GYGCGCG 73
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 4 YGNYYG-GLGYGYDCKYSYTSGFGAFRILDCGYRCGC 39
YG YG G G GY C SG+ CGYR C
Sbjct: 56 YGCGYGCGYGTGYGCGCGSGSGY-------CGYRPFC 85
>gi|169205935 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 37.7 bits (86), Expect = 0.002
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 4 YGNYYG-GLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
YG+ YG G G GY C Y SG G CGY CG G
Sbjct: 58 YGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCGYG 95
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 2 SYYGNYYG-------GLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
+YYGN G G G GY C Y + G G CGY G G
Sbjct: 34 NYYGNSCGYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSG 79
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 3 YYGNYYGGLGYGYDCKY--SYTSGFGAFRILDCGYRCGCG 40
Y Y G G GY Y Y G+G GY CGCG
Sbjct: 70 YSCGYGSGSGCGYGTGYGCGYGCGYGT------GYGCGCG 103
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 4 YGNYYG-GLGYGYDCKYSYTSGFGAFRILDCGYRCGC 39
YG YG G G GY C SG+ CGYR C
Sbjct: 86 YGCGYGCGYGTGYGCGCGSGSGY-------CGYRPFC 115
>gi|239744833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 35.4 bits (80), Expect = 0.010
Identities = 20/44 (45%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 2 SYYGNYYG-----GLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
S YG YG G G GY C Y SG G CGY CG G
Sbjct: 58 SSYGCGYGTGYSCGYGSGYSCGYGSGSGCGYGTGFGCGYGCGYG 101
Score = 35.0 bits (79), Expect = 0.013
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 4 YGNYYG---GLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
YG+ YG G GYGY SY G+G CGY CG G
Sbjct: 12 YGSSYGCGYGSGYGYGYGSSYGCGYGTG--YSCGYGCGYG 49
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 11/42 (26%)
Query: 4 YGNYYG-GLGYGYDCKY--SYTSGFGAFRILDCGY--RCGCG 40
YG+ YG G G GY C Y Y SG+G CGY GCG
Sbjct: 28 YGSSYGCGYGTGYSCGYGCGYGSGYG------CGYGSSYGCG 63
Score = 30.4 bits (67), Expect = 0.32
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 6 NYYG---GLGYGYDCKYSYTSGFGAFRILDCGYRCG--CG 40
NYYG G G Y C Y G+G CGY G CG
Sbjct: 4 NYYGNSCGYGSSYGCGYGSGYGYGYGSSYGCGYGTGYSCG 43
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 4 YGNYYG-GLGYGYDCKYS--YTSGFGAFRILDCGYRCGCG 40
YG+ YG G G Y C Y Y+ G+G+ GY CG G
Sbjct: 48 YGSGYGCGYGSSYGCGYGTGYSCGYGS------GYSCGYG 81
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 3 YYGNYYGGLGYGYDCKY--SYTSGFGAFRILDCGYRCGCG 40
Y Y G G GY C Y SY G+G GY CG G
Sbjct: 40 YSCGYGCGYGSGYGCGYGSSYGCGYGT------GYSCGYG 73
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 12/34 (35%)
Query: 7 YYGGLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
Y G G GY C Y GY CGCG
Sbjct: 88 YGTGFGCGYGCGYG------------TGYGCGCG 109
>gi|31791016 keratin associated protein 21-2 [Homo sapiens]
Length = 83
Score = 35.0 bits (79), Expect = 0.013
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 16/55 (29%)
Query: 2 SYYGNYYGGLGYG------------YDCKYS----YTSGFGAFRILDCGYRCGCG 40
+YY N GG GYG Y C Y Y SG+G CGY GCG
Sbjct: 4 NYYRNCCGGCGYGSGWSSGCGYGCGYGCGYGSGCRYGSGYGTGCGYGCGYGSGCG 58
Score = 30.0 bits (66), Expect = 0.42
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 4 YGNYYGGLGYGYDCKYSYTSGFGAFRILDCGYRCGCGG 41
YG+ YG G GY C Y G+G CGY C G
Sbjct: 39 YGSGYG-TGCGYGCGYGSGCGYG------CGYSSSCCG 69
>gi|31791010 keratin associated protein 21-1 [Homo sapiens]
Length = 79
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 13/46 (28%)
Query: 2 SYYGNYYG-------GLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
+YYGN G G G G C Y +G+G CGY CG G
Sbjct: 4 NYYGNSCGYGSGCGCGYGSGSGCGCGYGTGYG------CGYGCGFG 43
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 4 YGNYYG-GLGYGYDCKYSYTSGFGAFRILDCGYRCGC 39
+G++YG G G GY C Y SG+ CGYR C
Sbjct: 42 FGSHYGCGYGTGYGCGYGSGSGY-------CGYRPFC 71
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 7 YYGGLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
Y G G GY C + G G CGY G G
Sbjct: 30 YGTGYGCGYGCGFGSHYGCGYGTGYGCGYGSGSG 63
>gi|239757562 PREDICTED: similar to Keratin-associated protein
22-2 [Homo sapiens]
Length = 45
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 1 MSYYGNYYGGLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
M YY NYYG L YG C Y G + C + C G
Sbjct: 1 MCYYHNYYGSLDYG--CSYGSEYGNSGYA---CNFPCSYG 35
>gi|239752072 PREDICTED: hypothetical protein XP_002348098 [Homo
sapiens]
Length = 45
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 1 MSYYGNYYGGLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
M YY NYYG L YG C Y G + C + C G
Sbjct: 1 MCYYHNYYGSLDYG--CSYGSEYGNSGYA---CNFPCSYG 35
>gi|239746569 PREDICTED: hypothetical protein XP_002343781 [Homo
sapiens]
Length = 45
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 1 MSYYGNYYGGLGYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
M YY NYYG L YG C Y G + C + C G
Sbjct: 1 MCYYHNYYGSLDYG--CSYGSEYGNSGYA---CNFPCSYG 35
>gi|194018511 keratin 77 [Homo sapiens]
Length = 578
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 5 GNYYGGLGYGYDCKYSYTSGFGAFRILDCGYRCGCGG 41
G Y GG G GY SY G GA GY GCGG
Sbjct: 509 GGYGGGSGGGYGGGRSYRGG-GARGRSGGGYGSGCGG 544
>gi|31791012 keratin associated protein 22-1 [Homo sapiens]
Length = 48
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 10/42 (23%)
Query: 1 MSYYGNYYGGLGY---GYDCKYSYTSGFGAFRILDCGYRCGC 39
MS+ NY+GG GY G C SY G + GY C C
Sbjct: 1 MSFDNNYHGGQGYAKGGLGC--SYGCGLSGY-----GYACYC 35
>gi|31791004 keratin associated protein 13-4 [Homo sapiens]
Length = 160
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 12 GYGYDCKYSYTSGFGAFRILDCGYRCGCG 40
GYG C YS +G FR L G GCG
Sbjct: 96 GYGSRCCYSLGNGSSGFRFLKYG---GCG 121
>gi|4505487 occludin [Homo sapiens]
Length = 522
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 3 YYGNYYGGLGYGYDCKYSYTSGFGAF 28
Y G+ +G G GY Y Y G+G +
Sbjct: 106 YGGSGFGSYGSGYGYGYGYGYGYGGY 131
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 2 SYYGNYYGGLGYGYDCKYSY 21
S +G+Y G GYGY Y Y
Sbjct: 109 SGFGSYGSGYGYGYGYGYGY 128
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.155 0.580
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,098,150
Number of Sequences: 37866
Number of extensions: 63561
Number of successful extensions: 348
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 86
length of query: 44
length of database: 18,247,518
effective HSP length: 18
effective length of query: 26
effective length of database: 17,565,930
effective search space: 456714180
effective search space used: 456714180
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.