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Search of human proteins with 187828635
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187828635 NOL1/NOP2/Sun domain family, member 7 [Homo
sapiens]
(718 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187828635 NOL1/NOP2/Sun domain family, member 7 [Homo sapiens] 1429 0.0
gi|23199998 NOL1/NOP2/Sun domain family, member 5 isoform 1 [Hom... 105 1e-22
gi|8922322 NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo... 104 3e-22
gi|87298836 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho... 75 2e-13
gi|23200000 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho... 75 2e-13
gi|23200002 NOL1/NOP2/Sun domain family, member 5C isoform 2 [Ho... 50 1e-05
gi|88758572 NOL1/NOP2/Sun domain family, member 5B [Homo sapiens] 49 2e-05
gi|88758570 NOL1/NOP2/Sun domain family, member 5B [Homo sapiens] 49 2e-05
gi|21717803 NOL1/NOP2/Sun domain family, member 5B [Homo sapiens] 49 2e-05
gi|45238858 WD repeat domain 44 protein [Homo sapiens] 42 0.002
gi|76150625 nucleolar protein 1, 120kDa [Homo sapiens] 38 0.037
gi|76150623 nucleolar protein 1, 120kDa [Homo sapiens] 38 0.037
gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens] 37 0.064
gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens] 37 0.064
gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens] 37 0.064
gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens] 35 0.32
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap... 33 0.71
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap... 32 1.6
gi|169173235 PREDICTED: hypothetical protein [Homo sapiens] 32 2.1
gi|71061468 centromere protein E [Homo sapiens] 32 2.1
gi|118601070 hypothetical protein LOC158724 [Homo sapiens] 32 2.1
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 32 2.1
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 32 2.1
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 32 2.7
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 32 2.7
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 32 2.7
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 32 2.7
gi|148539835 dystroglycan 1 preproprotein [Homo sapiens] 32 2.7
gi|62526045 zinc finger protein 638 [Homo sapiens] 32 2.7
gi|163965366 nascent polypeptide-associated complex alpha subuni... 32 2.7
>gi|187828635 NOL1/NOP2/Sun domain family, member 7 [Homo sapiens]
Length = 718
Score = 1429 bits (3699), Expect = 0.0
Identities = 718/718 (100%), Positives = 718/718 (100%)
Query: 1 MLNSTGELEFSNEEDPEIISQLTSLPLSGGKSSAGVPEKTGYPDSVYVMAANIFQGIRIE 60
MLNSTGELEFSNEEDPEIISQLTSLPLSGGKSSAGVPEKTGYPDSVYVMAANIFQGIRIE
Sbjct: 1 MLNSTGELEFSNEEDPEIISQLTSLPLSGGKSSAGVPEKTGYPDSVYVMAANIFQGIRIE 60
Query: 61 KSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSCIFPSTTIP 120
KSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSCIFPSTTIP
Sbjct: 61 KSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSCIFPSTTIP 120
Query: 121 DHLSSLIIVMLYDFQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAALARCRIKHD 180
DHLSSLIIVMLYDFQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAALARCRIKHD
Sbjct: 121 DHLSSLIIVMLYDFQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAALARCRIKHD 180
Query: 181 ALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVKSVLHIDDKV 240
ALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVKSVLHIDDKV
Sbjct: 181 ALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVKSVLHIDDKV 240
Query: 241 FAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLNMDDDVLMVN 300
FAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLNMDDDVLMVN
Sbjct: 241 FAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLNMDDDVLMVN 300
Query: 301 TGSWYTVSHMSILTNNNTSKVFVCGVQSQAKDPDLKTLFTKIGCKNIEILHEKFINIESK 360
TGSWYTVSHMSILTNNNTSKVFVCGVQSQAKDPDLKTLFTKIGCKNIEILHEKFINIESK
Sbjct: 301 TGSWYTVSHMSILTNNNTSKVFVCGVQSQAKDPDLKTLFTKIGCKNIEILHEKFINIESK 360
Query: 361 DHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYE 420
DHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYE
Sbjct: 361 DHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYE 420
Query: 421 QLTHAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQDLGNKGQPYRLSPPVLPLCSLKE 480
QLTHAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQDLGNKGQPYRLSPPVLPLCSLKE
Sbjct: 421 QLTHAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQDLGNKGQPYRLSPPVLPLCSLKE 480
Query: 481 IQLSTDKFFRMEPSEITNGCFLSILTRERDPSETVSVNDVLARAAAKGLLDGIELGKSSK 540
IQLSTDKFFRMEPSEITNGCFLSILTRERDPSETVSVNDVLARAAAKGLLDGIELGKSSK
Sbjct: 481 IQLSTDKFFRMEPSEITNGCFLSILTRERDPSETVSVNDVLARAAAKGLLDGIELGKSSK 540
Query: 541 REKKKKKSKTSLTKGATTDNGIQMKIAEFLNRETKASANLSETVTKPPLPQKNTAQVGAS 600
REKKKKKSKTSLTKGATTDNGIQMKIAEFLNRETKASANLSETVTKPPLPQKNTAQVGAS
Sbjct: 541 REKKKKKSKTSLTKGATTDNGIQMKIAEFLNRETKASANLSETVTKPPLPQKNTAQVGAS 600
Query: 601 SQTRKPNKLAPHPAVPAFVKNTCPSRPRERQTHFLRPRPEDRMVALKPIEIVLPPVFMPF 660
SQTRKPNKLAPHPAVPAFVKNTCPSRPRERQTHFLRPRPEDRMVALKPIEIVLPPVFMPF
Sbjct: 601 SQTRKPNKLAPHPAVPAFVKNTCPSRPRERQTHFLRPRPEDRMVALKPIEIVLPPVFMPF 660
Query: 661 SSPQGIRSRMPTQHLYCRWVAPKALVPTCLPTHSLSRKEEKPKDDTPSSLLRPPRRWL 718
SSPQGIRSRMPTQHLYCRWVAPKALVPTCLPTHSLSRKEEKPKDDTPSSLLRPPRRWL
Sbjct: 661 SSPQGIRSRMPTQHLYCRWVAPKALVPTCLPTHSLSRKEEKPKDDTPSSLLRPPRRWL 718
>gi|23199998 NOL1/NOP2/Sun domain family, member 5 isoform 1 [Homo
sapiens]
Length = 466
Score = 105 bits (263), Expect = 1e-22
Identities = 104/362 (28%), Positives = 166/362 (45%), Gaps = 35/362 (9%)
Query: 160 LLNSFKIKLAAALARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVY 219
LL + +L A LAR ++ H +S L E V + AS LP + +NT K ++V
Sbjct: 94 LLGRHQARLKAELARLKV-HRGVSRNEDLLE-VGSRPGPASQLPRFVRVNTLKTCSDDVV 151
Query: 220 NNLKRRGYNKVKSVLHIDD------KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLI 273
+ KR+G++ +DD K F +D ++L+FP+ + DL L++ LI
Sbjct: 152 DYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPA--QTDLHEHPLYRAGHLI 209
Query: 274 FQDKSRSLAVHSVKALLNMDDDVLMVNTGSWYTVSHMSILTNNNTSKVFVCGVQSQAKDP 333
QD++ L + V+ SH++ L N K+F + ++ +
Sbjct: 210 LQDRASCLPAMLLDP--PPGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAK-RLA 265
Query: 334 DLKTLFTKIGCKNIEILHEKFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHE 393
+ TL + G E+ E F+ + D R +V ILL P CSG G+ +
Sbjct: 266 SMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPS---------- 315
Query: 394 DTEFLKDHSQGGISVDKLHVLAQQQYEQLTHAMKFTKAQAVVYCTCSVFPEENEAVVKKA 453
L++ G S +LH LA Q L HA+ F Q +VY TCS+ EENE VV+ A
Sbjct: 316 --RQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENEDVVRDA 373
Query: 454 LEFQDLGNKGQPYRLSP--PVLPLCSLKEIQLSTDKFFRMEP-SEITNGCFLSILTRERD 510
L+ Q+ G +RL+P P P L + R P + +++G F++++ R
Sbjct: 374 LQ-QNPG----AFRLAPALPAWPHRGLSTFP-GAEHCLRASPETTLSSGFFVAVIERVEV 427
Query: 511 PS 512
PS
Sbjct: 428 PS 429
>gi|8922322 NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo
sapiens]
Length = 429
Score = 104 bits (259), Expect = 3e-22
Identities = 103/361 (28%), Positives = 165/361 (45%), Gaps = 35/361 (9%)
Query: 160 LLNSFKIKLAAALARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVY 219
LL + +L A LAR ++ H +S L E V + AS LP + +NT K ++V
Sbjct: 94 LLGRHQARLKAELARLKV-HRGVSRNEDLLE-VGSRPGPASQLPRFVRVNTLKTCSDDVV 151
Query: 220 NNLKRRGYNKVKSVLHIDD------KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLI 273
+ KR+G++ +DD K F +D ++L+FP+ + DL L++ LI
Sbjct: 152 DYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPA--QTDLHEHPLYRAGHLI 209
Query: 274 FQDKSRSLAVHSVKALLNMDDDVLMVNTGSWYTVSHMSILTNNNTSKVFVCGVQSQAKDP 333
QD++ L + V+ SH++ L N K+F + ++ +
Sbjct: 210 LQDRASCLPAMLLDP--PPGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAK-RLA 265
Query: 334 DLKTLFTKIGCKNIEILHEKFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHE 393
+ TL + G E+ E F+ + D R +V ILL P CSG G+ +
Sbjct: 266 SMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPS---------- 315
Query: 394 DTEFLKDHSQGGISVDKLHVLAQQQYEQLTHAMKFTKAQAVVYCTCSVFPEENEAVVKKA 453
L++ G S +LH LA Q L HA+ F Q +VY TCS+ EENE VV+ A
Sbjct: 316 --RQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENEDVVRDA 373
Query: 454 LEFQDLGNKGQPYRLSP--PVLPLCSLKEIQLSTDKFFRMEP-SEITNGCFLSILTRERD 510
L+ Q+ G +RL+P P P L + R P + +++G F++++ R
Sbjct: 374 LQ-QNPG----AFRLAPALPAWPHRGLSTFP-GAEHCLRASPETTLSSGFFVAVIERVEV 427
Query: 511 P 511
P
Sbjct: 428 P 428
>gi|87298836 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Homo
sapiens]
Length = 315
Score = 75.1 bits (183), Expect = 2e-13
Identities = 84/311 (27%), Positives = 138/311 (44%), Gaps = 51/311 (16%)
Query: 249 DVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLNMDDDVLMVNTGSWYTVS 308
++L+FP+ + DL L++ LI QD++ L A+L M SW V
Sbjct: 3 ELLVFPA--QTDLHEHPLYRAGHLILQDRASCLP-----AMLLDPRQAPM----SWMPVP 51
Query: 309 HMSILTNN------NTSKVFVCGVQSQAKDPDLKTLFTKIGCKNIEILHEKFINIESKDH 362
+I T++ N K+F + ++ + + TL G E+ E F+ + D
Sbjct: 52 PQAIKTSHLAALLKNQGKIFAFDLDAR-RLASMATLLAWAGVSCCELAEEDFLAVSPLDP 110
Query: 363 RLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYEQL 422
R ++V +LL P CSG G+ + L++ G S +LH LA Q L
Sbjct: 111 RYREVHYVLLDPSCSGSGMPS------------RQLEEPGAGTPSPVRLHALAGFQQRAL 158
Query: 423 THAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQDLGNKGQPYRLSP--PVLPLCSLKE 480
HA+ F Q +VY CS+ EENE +V+ AL+ Q+ G +RL+P P P L
Sbjct: 159 CHALTFPSLQRLVYSMCSLCQEENEDMVQDALQ-QNPG----AFRLAPALPARPHRGLST 213
Query: 481 IQLSTDKFFRMEP-SEITNGCFLSILTRERDPSETVSVNDVLARAAAKGLLDGIELGKSS 539
+ R P + ++ G F++++ R P+ S + A A + S
Sbjct: 214 FP-GAEHCLRASPKTTLSGGFFVAVIERVEMPT---SASQAKASAPER---------TPS 260
Query: 540 KREKKKKKSKT 550
K+KK++K+
Sbjct: 261 PAPKRKKRAKS 271
>gi|23200000 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Homo
sapiens]
Length = 315
Score = 75.1 bits (183), Expect = 2e-13
Identities = 84/311 (27%), Positives = 138/311 (44%), Gaps = 51/311 (16%)
Query: 249 DVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLNMDDDVLMVNTGSWYTVS 308
++L+FP+ + DL L++ LI QD++ L A+L M SW V
Sbjct: 3 ELLVFPA--QTDLHEHPLYRAGHLILQDRASCLP-----AMLLDPRQAPM----SWMPVP 51
Query: 309 HMSILTNN------NTSKVFVCGVQSQAKDPDLKTLFTKIGCKNIEILHEKFINIESKDH 362
+I T++ N K+F + ++ + + TL G E+ E F+ + D
Sbjct: 52 PQAIKTSHLAALLKNQGKIFAFDLDAR-RLASMATLLAWAGVSCCELAEEDFLAVSPLDP 110
Query: 363 RLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYEQL 422
R ++V +LL P CSG G+ + L++ G S +LH LA Q L
Sbjct: 111 RYREVHYVLLDPSCSGSGMPS------------RQLEEPGAGTPSPVRLHALAGFQQRAL 158
Query: 423 THAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQDLGNKGQPYRLSP--PVLPLCSLKE 480
HA+ F Q +VY CS+ EENE +V+ AL+ Q+ G +RL+P P P L
Sbjct: 159 CHALTFPSLQRLVYSMCSLCQEENEDMVQDALQ-QNPG----AFRLAPALPARPHRGLST 213
Query: 481 IQLSTDKFFRMEP-SEITNGCFLSILTRERDPSETVSVNDVLARAAAKGLLDGIELGKSS 539
+ R P + ++ G F++++ R P+ S + A A + S
Sbjct: 214 FP-GAEHCLRASPKTTLSGGFFVAVIERVEMPT---SASQAKASAPER---------TPS 260
Query: 540 KREKKKKKSKT 550
K+KK++K+
Sbjct: 261 PAPKRKKRAKS 271
>gi|23200002 NOL1/NOP2/Sun domain family, member 5C isoform 2 [Homo
sapiens]
Length = 291
Score = 49.7 bits (117), Expect = 1e-05
Identities = 74/311 (23%), Positives = 125/311 (40%), Gaps = 75/311 (24%)
Query: 249 DVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLNMDDDVLMVNTGSWYTVS 308
++L+FP+ + DL L++ LI QD++ L A+L M SW V
Sbjct: 3 ELLVFPA--QTDLHEHPLYRAGHLILQDRASCLP-----AMLLDPRQAPM----SWMPVP 51
Query: 309 HMSILTNN------NTSKVFVCGVQSQAKDPDLKTLFTKIGCKNIEILHEKFINIESKDH 362
+I T++ N K+F + ++ + + TL G E+ E F+ + D
Sbjct: 52 PQAIKTSHLAALLKNQGKIFAFDLDAR-RLASMATLLAWAGVSCCELAEEDFLAVSPLDP 110
Query: 363 RLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYEQL 422
R ++V +LL P CSG G+ + QL
Sbjct: 111 RYREVHYVLLDPSCSGSGMPS------------------------------------RQL 134
Query: 423 THAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQDLGNKGQPYRLSP--PVLPLCSLKE 480
T + +VY CS+ EENE +V+ AL+ Q+ G +RL+P P P L
Sbjct: 135 EEPGAGTPSPRLVYSMCSLCQEENEDMVQDALQ-QNPG----AFRLAPALPARPHRGLST 189
Query: 481 IQLSTDKFFRMEP-SEITNGCFLSILTRERDPSETVSVNDVLARAAAKGLLDGIELGKSS 539
+ R P + ++ G F++++ R P+ S + A A + S
Sbjct: 190 FP-GAEHCLRASPKTTLSGGFFVAVIERVEMPT---SASQAKASAPER---------TPS 236
Query: 540 KREKKKKKSKT 550
K+KK++K+
Sbjct: 237 PAPKRKKRAKS 247
>gi|88758572 NOL1/NOP2/Sun domain family, member 5B [Homo sapiens]
Length = 154
Score = 48.5 bits (114), Expect = 2e-05
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 398 LKDHSQGGISVDKLHVLAQQQYEQLTHAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQ 457
L+D G S +LH LA Q L HA+ F Q +VY CS+ EENE +V AL+ Q
Sbjct: 6 LEDPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSMCSLCQEENEDMVPDALQ-Q 64
Query: 458 DLGNKGQPYRLSP--PVLPLCSLKEIQLSTDKFFRMEP-SEITNGCFLSILTRERDPS 512
+ G +RL+P P P L + R P + ++ G F++++ R P+
Sbjct: 65 NPG----AFRLAPALPARPHRGLSTFP-GAEHCLRASPKTTLSGGFFVAVIERVEMPT 117
>gi|88758570 NOL1/NOP2/Sun domain family, member 5B [Homo sapiens]
Length = 154
Score = 48.5 bits (114), Expect = 2e-05
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 398 LKDHSQGGISVDKLHVLAQQQYEQLTHAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQ 457
L+D G S +LH LA Q L HA+ F Q +VY CS+ EENE +V AL+ Q
Sbjct: 6 LEDPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSMCSLCQEENEDMVPDALQ-Q 64
Query: 458 DLGNKGQPYRLSP--PVLPLCSLKEIQLSTDKFFRMEP-SEITNGCFLSILTRERDPS 512
+ G +RL+P P P L + R P + ++ G F++++ R P+
Sbjct: 65 NPG----AFRLAPALPARPHRGLSTFP-GAEHCLRASPKTTLSGGFFVAVIERVEMPT 117
>gi|21717803 NOL1/NOP2/Sun domain family, member 5B [Homo sapiens]
Length = 154
Score = 48.5 bits (114), Expect = 2e-05
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 398 LKDHSQGGISVDKLHVLAQQQYEQLTHAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQ 457
L+D G S +LH LA Q L HA+ F Q +VY CS+ EENE +V AL+ Q
Sbjct: 6 LEDPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSMCSLCQEENEDMVPDALQ-Q 64
Query: 458 DLGNKGQPYRLSP--PVLPLCSLKEIQLSTDKFFRMEP-SEITNGCFLSILTRERDPS 512
+ G +RL+P P P L + R P + ++ G F++++ R P+
Sbjct: 65 NPG----AFRLAPALPARPHRGLSTFP-GAEHCLRASPKTTLSGGFFVAVIERVEMPT 117
>gi|45238858 WD repeat domain 44 protein [Homo sapiens]
Length = 913
Score = 42.0 bits (97), Expect = 0.002
Identities = 46/184 (25%), Positives = 71/184 (38%), Gaps = 23/184 (12%)
Query: 533 IELGKSSKREKKKKKSKTSLTKGATTDNGIQMKI----AEFLNRET---KASANLSETVT 585
+EL K ++ +K TK T + Q+ + E LN+E K ++ E V+
Sbjct: 135 LELKKCFPSDETCEKPVDETTKLTQTSSTEQLNVLETETEVLNKEAVEVKGGGDVLEPVS 194
Query: 586 KPPLPQKNTAQVGASSQTRKPNKLAPHPAVPAFVKNTCPSRPRERQTHFLRPRPEDRMVA 645
L K+ A V + + P L P P + A K P+RP T+F PRP
Sbjct: 195 SDSLSTKDFAAVEEVAPAKPPRHLTPEPDIVASTKKPVPARP-PPPTNFPPPRP------ 247
Query: 646 LKPIEIVLPPVFMPFSSPQGIRSRMPTQHLYCRWV-APKALVPTCLPTHSLSRKEEKPKD 704
PP P P+ +S + + L + PK + + + E KD
Sbjct: 248 --------PPPSRPAPPPRKRKSELEFETLKTPDIDVPKENITSDSLLTASMASESTVKD 299
Query: 705 DTPS 708
PS
Sbjct: 300 SQPS 303
>gi|76150625 nucleolar protein 1, 120kDa [Homo sapiens]
Length = 808
Score = 37.7 bits (86), Expect = 0.037
Identities = 76/356 (21%), Positives = 126/356 (35%), Gaps = 53/356 (14%)
Query: 370 ILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYEQLTHAMKFT 429
+LL CSG GV + + ++ + L+ A Q E L A+
Sbjct: 453 VLLDAPCSGTGVISKDPAVKTNKDEKDILR--------------CAHLQKELLLSAIDSV 498
Query: 430 KAQA-----VVYCTCSVFPEENEAVVKKALEFQ---------DLGNKG----QPYRLSPP 471
A + +VYCTCS+ EENE VV AL+ + D G +G + R P
Sbjct: 499 NATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPS 558
Query: 472 VLPLCSLKEIQLSTDKFFRMEPSEITNGCFLSILTRERDPSETVSVNDVLARAAAKGLLD 531
+ + D FF + + +N SI + SET + +V L
Sbjct: 559 LRSTRRFYPHTHNMDGFFIAKFKKFSN----SIPQSQTGNSETATPTNV-------DLPQ 607
Query: 532 GIELGKSSKREKKKKKSKTSLTKGATTDNGIQMKIAEFLNRETKASANLSETVTKPPLPQ 591
I ++S + KK K + + + LN +K + + TV Q
Sbjct: 608 VIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVPSVTKTQ 667
Query: 592 KNTAQVGASSQTRKPNKLAPHPAVPAFVKNTCPSRPRERQTHFLRPRPEDRMVALKPIEI 651
+++ +S K + P V +K P ++ FLR K +
Sbjct: 668 ASSSFQDSSQPAGKAEGIR-EPKVTGKLKQRSPKLQSSKKVAFLRQNAPP-----KGTDT 721
Query: 652 VLPPVFMPFSSPQGIRSRMPTQHLYCRWVAPKALVPTCLPTHSLSRKEEKPKDDTP 707
P V P + ++ + Q L K + LP + + ++DTP
Sbjct: 722 QTPAVLSPSKTQATLKPKDHHQPL----GRAKGVEKQQLPEQPFEKAAFQKQNDTP 773
>gi|76150623 nucleolar protein 1, 120kDa [Homo sapiens]
Length = 808
Score = 37.7 bits (86), Expect = 0.037
Identities = 76/356 (21%), Positives = 126/356 (35%), Gaps = 53/356 (14%)
Query: 370 ILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYEQLTHAMKFT 429
+LL CSG GV + + ++ + L+ A Q E L A+
Sbjct: 453 VLLDAPCSGTGVISKDPAVKTNKDEKDILR--------------CAHLQKELLLSAIDSV 498
Query: 430 KAQA-----VVYCTCSVFPEENEAVVKKALEFQ---------DLGNKG----QPYRLSPP 471
A + +VYCTCS+ EENE VV AL+ + D G +G + R P
Sbjct: 499 NATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPS 558
Query: 472 VLPLCSLKEIQLSTDKFFRMEPSEITNGCFLSILTRERDPSETVSVNDVLARAAAKGLLD 531
+ + D FF + + +N SI + SET + +V L
Sbjct: 559 LRSTRRFYPHTHNMDGFFIAKFKKFSN----SIPQSQTGNSETATPTNV-------DLPQ 607
Query: 532 GIELGKSSKREKKKKKSKTSLTKGATTDNGIQMKIAEFLNRETKASANLSETVTKPPLPQ 591
I ++S + KK K + + + LN +K + + TV Q
Sbjct: 608 VIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVPSVTKTQ 667
Query: 592 KNTAQVGASSQTRKPNKLAPHPAVPAFVKNTCPSRPRERQTHFLRPRPEDRMVALKPIEI 651
+++ +S K + P V +K P ++ FLR K +
Sbjct: 668 ASSSFQDSSQPAGKAEGIR-EPKVTGKLKQRSPKLQSSKKVAFLRQNAPP-----KGTDT 721
Query: 652 VLPPVFMPFSSPQGIRSRMPTQHLYCRWVAPKALVPTCLPTHSLSRKEEKPKDDTP 707
P V P + ++ + Q L K + LP + + ++DTP
Sbjct: 722 QTPAVLSPSKTQATLKPKDHHQPL----GRAKGVEKQQLPEQPFEKAAFQKQNDTP 773
>gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 37.0 bits (84), Expect = 0.064
Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 19/195 (9%)
Query: 534 ELGKSSKREKKKKKSKTSLTKGATTDNGIQMKIAEFLNRETKASA-NLSETVTKPPLPQK 592
E+ K + KK+ +TS +G + +E + K S + + P + +K
Sbjct: 524 EMEKKESEQAKKEDKETSAKRGKEITGVKRQSKSEHETSDAKKSVEDRGKRCPTPEIQKK 583
Query: 593 NTAQVGASSQTR-----KPNKLAPHPA-----VPAFVKNTCPSRPRERQTHFLRPRPEDR 642
+T V +S T KP K+ P F ++T + + Q L +
Sbjct: 584 STGDVPHTSVTGDSGSGKPFKIKGQPESGILRTGTFREDTDDTERNKAQREPLTRARSEE 643
Query: 643 MVALKPIEIVLPPVFMPFSSP-----QGIRSRMPTQHLYCRWVAPKALVPTCLPTHSLSR 697
M + P LP + F P + S T H+Y +AP + P+ PTH
Sbjct: 644 MGRIVP---GLPSGWAKFLDPITGTFRYYHSPTNTVHMYPPEMAPSSAPPSTPPTHKAKP 700
Query: 698 KEEKPKDDTPSSLLR 712
+ +D PS L R
Sbjct: 701 QIPAERDREPSKLKR 715
>gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 37.0 bits (84), Expect = 0.064
Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 19/195 (9%)
Query: 534 ELGKSSKREKKKKKSKTSLTKGATTDNGIQMKIAEFLNRETKASA-NLSETVTKPPLPQK 592
E+ K + KK+ +TS +G + +E + K S + + P + +K
Sbjct: 524 EMEKKESEQAKKEDKETSAKRGKEITGVKRQSKSEHETSDAKKSVEDRGKRCPTPEIQKK 583
Query: 593 NTAQVGASSQTR-----KPNKLAPHPA-----VPAFVKNTCPSRPRERQTHFLRPRPEDR 642
+T V +S T KP K+ P F ++T + + Q L +
Sbjct: 584 STGDVPHTSVTGDSGSGKPFKIKGQPESGILRTGTFREDTDDTERNKAQREPLTRARSEE 643
Query: 643 MVALKPIEIVLPPVFMPFSSP-----QGIRSRMPTQHLYCRWVAPKALVPTCLPTHSLSR 697
M + P LP + F P + S T H+Y +AP + P+ PTH
Sbjct: 644 MGRIVP---GLPSGWAKFLDPITGTFRYYHSPTNTVHMYPPEMAPSSAPPSTPPTHKAKP 700
Query: 698 KEEKPKDDTPSSLLR 712
+ +D PS L R
Sbjct: 701 QIPAERDREPSKLKR 715
>gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 37.0 bits (84), Expect = 0.064
Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 19/195 (9%)
Query: 534 ELGKSSKREKKKKKSKTSLTKGATTDNGIQMKIAEFLNRETKASA-NLSETVTKPPLPQK 592
E+ K + KK+ +TS +G + +E + K S + + P + +K
Sbjct: 524 EMEKKESEQAKKEDKETSAKRGKEITGVKRQSKSEHETSDAKKSVEDRGKRCPTPEIQKK 583
Query: 593 NTAQVGASSQTR-----KPNKLAPHPA-----VPAFVKNTCPSRPRERQTHFLRPRPEDR 642
+T V +S T KP K+ P F ++T + + Q L +
Sbjct: 584 STGDVPHTSVTGDSGSGKPFKIKGQPESGILRTGTFREDTDDTERNKAQREPLTRARSEE 643
Query: 643 MVALKPIEIVLPPVFMPFSSP-----QGIRSRMPTQHLYCRWVAPKALVPTCLPTHSLSR 697
M + P LP + F P + S T H+Y +AP + P+ PTH
Sbjct: 644 MGRIVP---GLPSGWAKFLDPITGTFRYYHSPTNTVHMYPPEMAPSSAPPSTPPTHKAKP 700
Query: 698 KEEKPKDDTPSSLLR 712
+ +D PS L R
Sbjct: 701 QIPAERDREPSKLKR 715
>gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens]
Length = 574
Score = 34.7 bits (78), Expect = 0.32
Identities = 55/200 (27%), Positives = 81/200 (40%), Gaps = 46/200 (23%)
Query: 517 VNDVLARAAAKGLLDGIELGK------------SSKREKKKKKSKTSLTKGATTDNGIQM 564
V DVLA A+ + D +++ K S+K+E++ SL ++T G Q
Sbjct: 146 VEDVLAAASYLHMNDIVKVCKRRLQARALAEADSTKKEEETNSQLPSLEFLSSTSRGTQP 205
Query: 565 KIAE------FLNRETKASANLSETVTKPPLPQKN----TAQVGASSQTRKPNKLAPHPA 614
+A + E K SA S TV P P + T Q G + P+ APHP
Sbjct: 206 SLASAETSGHWGKGEWKGSAAPSPTVRPPDEPPMSSGADTTQPGM--EVDAPHLRAPHPP 263
Query: 615 VPAFVKNTCPSRPRER-QTHF---------LRPRPED-------RMVALK----PIEIVL 653
V A V PS E T++ L P P R+V K P++
Sbjct: 264 V-ADVSLASPSSSTETIPTNYFSSGISAVSLEPLPSLDVGPESLRVVEPKDPGGPLQGFY 322
Query: 654 PPVFMPFSSPQGIRSRMPTQ 673
PP P S+P + + +P+Q
Sbjct: 323 PPASAPTSAPAPVSAPVPSQ 342
>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo
sapiens]
Length = 2352
Score = 33.5 bits (75), Expect = 0.71
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 15/108 (13%)
Query: 606 PNKLAPHPAVPAFVKNTCPSRPRERQTHFLRPRPEDRMVALKPIEIVLPPVFMPFSSPQG 665
PN L P P + T PS R PR V ++ + +V+PP P P
Sbjct: 720 PNNLLSAPP-PDVTQLTPPSHDLNRA-----PR-----VPVQALPMVVPPQ-EPDKPPAN 767
Query: 666 IRSRMPTQHLYCRWVAPKALVPTCLPTHSLSRKEEKPKDDTPSSLLRP 713
+ + +P ++ + V+ +A + PTHS++ +P+ TPS ++ P
Sbjct: 768 VATTLPIRN---KAVSGRASAMSNTPTHSIAASISQPQTPTPSPIISP 812
Score = 32.3 bits (72), Expect = 1.6
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 565 KIAEFLNRETKASANLSETVTKPPLPQKNTAQVGA-SSQTRKPNKLAPHPAVPAFVKNTC 623
K+A +E + + T T+PP ++ A S+Q + P ++ P
Sbjct: 1819 KVASSSEQEAGSPPVVETTNTRPPNSSSSSGSSSAHSNQQQPPGSVSQEP---------- 1868
Query: 624 PSRPRERQTHFLRPRPEDRMVALKPIEIVLPPVFMPFSSPQGIRSRMPTQHLYCRWVAPK 683
RP +Q+ P PE RM + P+ PV +P ++P + MP + C PK
Sbjct: 1869 --RPPLQQSQV--PPPEVRM-TVPPLATSSAPVAVPSTAP--VTYPMPQTPMGCPQPTPK 1921
Query: 684 ALVPTCLP 691
P P
Sbjct: 1922 METPAIRP 1929
>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sapiens]
Length = 2603
Score = 32.3 bits (72), Expect = 1.6
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 565 KIAEFLNRETKASANLSETVTKPPLPQKNTAQVGA-SSQTRKPNKLAPHPAVPAFVKNTC 623
K+A +E + + T T+PP ++ A S+Q + P ++ P
Sbjct: 2070 KVASSSEQEAGSPPVVETTNTRPPNSSSSSGSSSAHSNQQQPPGSVSQEP---------- 2119
Query: 624 PSRPRERQTHFLRPRPEDRMVALKPIEIVLPPVFMPFSSPQGIRSRMPTQHLYCRWVAPK 683
RP +Q+ P PE RM + P+ PV +P ++P + MP + C PK
Sbjct: 2120 --RPPLQQSQV--PPPEVRM-TVPPLATSSAPVAVPSTAP--VTYPMPQTPMGCPQPTPK 2172
Query: 684 ALVPTCLP 691
P P
Sbjct: 2173 METPAIRP 2180
>gi|169173235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 32.0 bits (71), Expect = 2.1
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 651 IVLPPVFMPFSSPQGIRSRMPTQHLYCRWVAP-KALVPTCLPTHSLSRKEEKPKDDTPSS 709
I+LP V++ F +P+G R L C W+ P +A P CLPT +L+ P P
Sbjct: 131 ILLPFVWL-FPAPRGGVYRGRQASLSCGWLHPVRASWPLCLPTQALAMAGVPPPASLPPG 189
Query: 710 LL 711
L
Sbjct: 190 SL 191
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 32.0 bits (71), Expect = 2.1
Identities = 40/199 (20%), Positives = 73/199 (36%), Gaps = 19/199 (9%)
Query: 386 EFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYEQLTHAMKFTKAQAVVYCTCSVFPEE 445
+ + N E T+FL++ ++KL Q++ +++ F + + S EE
Sbjct: 2260 QVLSNRKEMTQFLEEWLNTRFDIEKLKNGIQKENDRICQVNNFFNNRIIAIMNESTEFEE 2319
Query: 446 NEAVVKKALEFQDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEITNGCFLSIL 505
A + K E QDL SLKE K ++ + + +G ++
Sbjct: 2320 RSATISKEWE-QDLK----------------SLKEKNEKLFKNYQTLKTSLASGAQVNPT 2362
Query: 506 TRERDPSETVSVNDVLARAAAKGLLDGIELGKSSKREKKKKKSKTSLTKGATTDNGIQMK 565
T++ S L + L + + K S K+ K K + K N I K
Sbjct: 2363 TQDNKNPHVTSRATQLTTEKIRELENSLHEAKESAMHKESKIIK--MQKELEVTNDIIAK 2420
Query: 566 IAEFLNRETKASANLSETV 584
+ ++ K ET+
Sbjct: 2421 LQAKVHESNKCLEKTKETI 2439
>gi|118601070 hypothetical protein LOC158724 [Homo sapiens]
Length = 791
Score = 32.0 bits (71), Expect = 2.1
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 570 LNRETKASANLSETVTKPPLPQKNTAQVGASSQTRKPNKLAPHPAVPAFVKNTCPSRPRE 629
L+ + + S ++PP ++ ++ +TR+ + L P P V + P P+
Sbjct: 491 LHSQPPKTRRTSSLRSEPPKTRRTSSLRSEPPKTRRTSSLGPEPPKTRRVSSLRPELPKS 550
Query: 630 RQTHFLRPRP 639
R+ L P P
Sbjct: 551 RRVSSLHPEP 560
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 32.0 bits (71), Expect = 2.1
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 8/142 (5%)
Query: 572 RETKASANLSETVTKPPLPQKNTAQVGASSQTRKPNKLAPHP--AVPAFVKNTCPSRPRE 629
R A LS T PP Q+ + G QT N+ +PHP P + + P
Sbjct: 437 RAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHA 496
Query: 630 RQTHFLRPRPEDRMVALKPIEIVLPPVFMPF-SSPQGIRSRMPTQHLYCRWVAPKALVPT 688
+ ++ +P+ + + P P SP S+ T + P++ P
Sbjct: 497 QPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQH-----PQSQPPY 551
Query: 689 CLPTHSLSRKEEKPKDDTPSSL 710
P ++++P+ PS+L
Sbjct: 552 SQPQAQSPYQQQQPQQPAPSTL 573
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 32.0 bits (71), Expect = 2.1
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 8/142 (5%)
Query: 572 RETKASANLSETVTKPPLPQKNTAQVGASSQTRKPNKLAPHP--AVPAFVKNTCPSRPRE 629
R A LS T PP Q+ + G QT N+ +PHP P + + P
Sbjct: 437 RAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHA 496
Query: 630 RQTHFLRPRPEDRMVALKPIEIVLPPVFMPF-SSPQGIRSRMPTQHLYCRWVAPKALVPT 688
+ ++ +P+ + + P P SP S+ T + P++ P
Sbjct: 497 QPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQH-----PQSQPPY 551
Query: 689 CLPTHSLSRKEEKPKDDTPSSL 710
P ++++P+ PS+L
Sbjct: 552 SQPQAQSPYQQQQPQQPAPSTL 573
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 31.6 bits (70), Expect = 2.7
Identities = 32/132 (24%), Positives = 44/132 (33%), Gaps = 9/132 (6%)
Query: 585 TKPPLPQKNTAQVGASSQTRKPNKLAPHPAVPAFVKNTCPSRPRE---RQTHFLRPRPED 641
T P P T + A + T+KP P P K T P+ P++ L P +
Sbjct: 445 TTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPE 504
Query: 642 RMVALKPIEIVLPPVFMPFSSPQGIRSRMPTQHLYCRWVAPKALVPTC----LPTHSLSR 697
+ P E L P +P PT PK PT PT
Sbjct: 505 KPAPTTPEE--LAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEP 562
Query: 698 KEEKPKDDTPSS 709
PK+ P++
Sbjct: 563 APTTPKETAPTT 574
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 31.6 bits (70), Expect = 2.7
Identities = 32/132 (24%), Positives = 44/132 (33%), Gaps = 9/132 (6%)
Query: 585 TKPPLPQKNTAQVGASSQTRKPNKLAPHPAVPAFVKNTCPSRPRE---RQTHFLRPRPED 641
T P P T + A + T+KP P P K T P+ P++ L P +
Sbjct: 486 TTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPE 545
Query: 642 RMVALKPIEIVLPPVFMPFSSPQGIRSRMPTQHLYCRWVAPKALVPTC----LPTHSLSR 697
+ P E L P +P PT PK PT PT
Sbjct: 546 KPAPTTPEE--LAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEP 603
Query: 698 KEEKPKDDTPSS 709
PK+ P++
Sbjct: 604 APTTPKETAPTT 615
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 31.6 bits (70), Expect = 2.7
Identities = 32/132 (24%), Positives = 44/132 (33%), Gaps = 9/132 (6%)
Query: 585 TKPPLPQKNTAQVGASSQTRKPNKLAPHPAVPAFVKNTCPSRPRE---RQTHFLRPRPED 641
T P P T + A + T+KP P P K T P+ P++ L P +
Sbjct: 538 TTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPE 597
Query: 642 RMVALKPIEIVLPPVFMPFSSPQGIRSRMPTQHLYCRWVAPKALVPTC----LPTHSLSR 697
+ P E L P +P PT PK PT PT
Sbjct: 598 KPAPTTPEE--LAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEP 655
Query: 698 KEEKPKDDTPSS 709
PK+ P++
Sbjct: 656 APTTPKETAPTT 667
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 31.6 bits (70), Expect = 2.7
Identities = 32/132 (24%), Positives = 44/132 (33%), Gaps = 9/132 (6%)
Query: 585 TKPPLPQKNTAQVGASSQTRKPNKLAPHPAVPAFVKNTCPSRPRE---RQTHFLRPRPED 641
T P P T + A + T+KP P P K T P+ P++ L P +
Sbjct: 579 TTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPE 638
Query: 642 RMVALKPIEIVLPPVFMPFSSPQGIRSRMPTQHLYCRWVAPKALVPTC----LPTHSLSR 697
+ P E L P +P PT PK PT PT
Sbjct: 639 KPAPTTPEE--LAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEP 696
Query: 698 KEEKPKDDTPSS 709
PK+ P++
Sbjct: 697 APTTPKETAPTT 708
>gi|148539835 dystroglycan 1 preproprotein [Homo sapiens]
Length = 895
Score = 31.6 bits (70), Expect = 2.7
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 574 TKASANLSETVTKPPLPQKNTAQVGASSQTRKPNKLAPHPAVPAFVKNTCPSRPRERQTH 633
T + T+T P + ++ T+KP P PA P+ T +R ++
Sbjct: 395 TTVPGQIRPTMTIPGYVEPTAVATPPTTTTKKPRVSTPKPATPSTDSTTTTTRRPTKKPR 454
Query: 634 FLRPRPE-DRMVALKPIEIVLPP 655
RP P V++ +E PP
Sbjct: 455 TPRPVPRVTTKVSITRLETASPP 477
>gi|62526045 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 31.6 bits (70), Expect = 2.7
Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 15/192 (7%)
Query: 444 EENEAVVKKALEFQDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEITNGCFLS 503
+E + K +E L KG+ ++ P KE++ T +E +++ S
Sbjct: 722 KEAITAIMKYIETTPLTIKGKSVKICVPGKKKAQNKEVKKKT-----LESKKVS----AS 772
Query: 504 ILTRERDPSETVSVNDVLARAAAKGLLDGIELGKSSKREKKKKKSKTSLTKGATTDNGIQ 563
L R+ D S+ V + V + +AAK + K +K K S S+ A N
Sbjct: 773 TLKRDADASKAVEI--VTSTSAAKTGQAKASVAKVNKSTGKSASSVKSVVTVAVKGNKAS 830
Query: 564 MKIAEFLNR---ETKASANLSETVTKPPLPQKNTAQVGASSQTRKPNKLAPHPAVPAFVK 620
+K A+ + E K + N+ + P+ +++ S + + A A ++
Sbjct: 831 IKTAKSGGKKSLEAKKTGNVKNKDSNKPVTIPENSEIKTSIEVKATENCAKEAISDAALE 890
Query: 621 NTCPSRPRERQT 632
T + P ++T
Sbjct: 891 AT-ENEPLNKET 901
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 31.6 bits (70), Expect = 2.7
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 573 ETKASANLSETVTKPPLPQKNTAQVGASSQTRKPNKLAPHPAVPAF--VKNTCPSRP--- 627
E+KAS L+ + LP+ +A V A+ LAP P VP + PS P
Sbjct: 1766 ESKASTPLTAAAFEKVLPKPESASVSAAPSPPVSLPLAPSP-VPTLPPKQQFLPSSPGLV 1824
Query: 628 RERQTHFLRPRPEDRMVALKPIEIVLPPVFMPFSSPQGIRSRMPT 672
E + L P ED ++ L P E + V PF Q + MPT
Sbjct: 1825 LESPSKPLAPADEDELLPLIPPEPISGGV--PF---QSVLVNMPT 1864
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,074,355
Number of Sequences: 37866
Number of extensions: 1235998
Number of successful extensions: 4407
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 4303
Number of HSP's gapped (non-prelim): 140
length of query: 718
length of database: 18,247,518
effective HSP length: 110
effective length of query: 608
effective length of database: 14,082,258
effective search space: 8562012864
effective search space used: 8562012864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.