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Search of human proteins with 18780285
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18780285 mucosal vascular addressin cell adhesion molecule 1
isoform b precursor [Homo sapiens]
(295 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18780285 mucosal vascular addressin cell adhesion molecule 1 ... 592 e-169
gi|109633022 mucosal vascular addressin cell adhesion molecule 1... 443 e-125
gi|4507875 vascular cell adhesion molecule 1 isoform a precursor... 59 5e-09
gi|18201909 vascular cell adhesion molecule 1 isoform b precurso... 42 8e-04
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 40 0.003
gi|33519481 neural cell adhesion molecule 2 precursor [Homo sapi... 40 0.003
gi|189571583 intercellular adhesion molecule 5 precursor [Homo s... 37 0.021
gi|27262659 colony stimulating factor 1 receptor precursor [Homo... 37 0.027
gi|167614500 lymphocyte-activation protein 3 precursor [Homo sap... 37 0.027
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 35 0.060
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 35 0.060
gi|58331253 obscurin, cytoskeletal calmodulin and titin-interact... 34 0.18
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 34 0.18
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens] 33 0.30
gi|67010025 Sp4 transcription factor [Homo sapiens] 32 0.51
gi|167466207 intercellular adhesion molecule 3 precursor [Homo s... 32 0.67
gi|4504561 intercellular adhesion molecule 4 isoform 1 precursor... 32 0.87
gi|33186895 selenoprotein V [Homo sapiens] 32 0.87
gi|144953876 signal-regulatory protein beta 1 isoform 1 precurso... 30 1.9
gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens] 30 1.9
gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens] 30 1.9
gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens] 30 1.9
gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens] 30 1.9
gi|189409125 transcription factor Dp family, member 3 [Homo sapi... 30 1.9
gi|89274169 cytokine induced apoptosis inhibitor 1 [Homo sapiens] 30 1.9
gi|12965172 taste receptor, type 2, member 9 [Homo sapiens] 30 1.9
gi|139948432 adlican [Homo sapiens] 30 1.9
gi|42542381 solute carrier family 28, member 1 isoform 1 [Homo s... 30 2.5
gi|169167742 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 30 2.5
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 30 2.5
>gi|18780285 mucosal vascular addressin cell adhesion molecule 1
isoform b precursor [Homo sapiens]
Length = 295
Score = 592 bits (1526), Expect = e-169
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW 60
MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW
Sbjct: 1 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW 60
Query: 61 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV 120
RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV
Sbjct: 61 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV 120
Query: 121 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED 180
SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED
Sbjct: 121 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED 180
Query: 181 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPASKPAGDQLPAALWTSSA 240
VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPASKPAGDQLPAALWTSSA
Sbjct: 181 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPASKPAGDQLPAALWTSSA 240
Query: 241 VLGLLLLALPTYHLWKRCRHLAEDDTHPPASLRLLPQVSAWAGLRGTGQVGISPS 295
VLGLLLLALPTYHLWKRCRHLAEDDTHPPASLRLLPQVSAWAGLRGTGQVGISPS
Sbjct: 241 VLGLLLLALPTYHLWKRCRHLAEDDTHPPASLRLLPQVSAWAGLRGTGQVGISPS 295
>gi|109633022 mucosal vascular addressin cell adhesion molecule 1
isoform a precursor [Homo sapiens]
Length = 382
Score = 443 bits (1140), Expect = e-125
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW 60
MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW
Sbjct: 1 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW 60
Query: 61 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV 120
RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV
Sbjct: 61 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV 120
Query: 121 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED 180
SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED
Sbjct: 121 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED 180
Query: 181 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIP 222
VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIP
Sbjct: 181 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIP 222
Score = 152 bits (383), Expect = 4e-37
Identities = 72/73 (98%), Positives = 73/73 (100%)
Query: 223 ASKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLRLLPQVSAWA 282
+SKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLRLLPQVSAWA
Sbjct: 310 SSKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLRLLPQVSAWA 369
Query: 283 GLRGTGQVGISPS 295
GLRGTGQVGISPS
Sbjct: 370 GLRGTGQVGISPS 382
>gi|4507875 vascular cell adhesion molecule 1 isoform a precursor
[Homo sapiens]
Length = 739
Score = 58.9 bits (141), Expect = 5e-09
Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 18/204 (8%)
Query: 21 LQVKPLQVE-PPEPVVAVALGASRQLTCRLACADRGASVQWRG-LDTSL-GAVQSDTGRS 77
+Q KP VE P P +A +G S LTC + + S WR +D+ L G V+S+ S
Sbjct: 308 VQEKPFTVEISPGPRIAAQIGDSVMLTCSVMGCE-SPSFSWRTQIDSPLSGKVRSEGTNS 366
Query: 78 VLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFP--DQLTVSPAALVPGDPEVACT 135
LT+ S + +C +CG + + +Q+ +Y+FP ++ +S + V+C
Sbjct: 367 TLTLSPVSFENEHSYLCTVTCGHKKLEKGIQVELYSFPRDPEIEMSGGLVNGSSVTVSCK 426
Query: 136 AHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLG 195
V P+D L LL G LE + L E+ + + E+ +T P
Sbjct: 427 VPSVYPLD--RLEIELLKGETILENIEFL------EDTDMKSLENKSLEMT----FIPTI 474
Query: 196 TPVPPALYCQATMRLPGLELSHRQ 219
AL CQA + + +E +Q
Sbjct: 475 EDTGKALVCQAKLHIDDMEFEPKQ 498
Score = 41.6 bits (96), Expect = 8e-04
Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 22/218 (10%)
Query: 31 PEPVVAVALGASRQLTCRLACADRGASVQWRG-LDTSL-GAVQSDTGRSVLTVRNASLSA 88
PE +G S LTC + WR +D+ L G V ++ S LT+ S
Sbjct: 31 PESRYLAQIGDSVSLTCSTTGCE-SPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGN 89
Query: 89 AGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVS-PAALVPGDP-EVACTAHKVTPVDPNA 146
+ +C +C R + +Q+ +Y+FP + L G P V C+ V P D
Sbjct: 90 EHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFD--R 147
Query: 147 LSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQA 206
L LL G ++ + L E+ + + E VT P+ + L C+A
Sbjct: 148 LEIDLLKGDHLMKSQEFL------EDADRKSLETKSLEVT----FTPVIEDIGKVLVCRA 197
Query: 207 TMRLPGLELSHRQAIPASKPAGDQLPAALWTSSAVLGL 244
L + ++P + A +L + + V+ +
Sbjct: 198 K-----LHIDEMDSVPTVRQAVKELQVYISPKNTVISV 230
>gi|18201909 vascular cell adhesion molecule 1 isoform b precursor
[Homo sapiens]
Length = 647
Score = 41.6 bits (96), Expect = 8e-04
Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 22/218 (10%)
Query: 31 PEPVVAVALGASRQLTCRLACADRGASVQWRG-LDTSL-GAVQSDTGRSVLTVRNASLSA 88
PE +G S LTC + WR +D+ L G V ++ S LT+ S
Sbjct: 31 PESRYLAQIGDSVSLTCSTTGCE-SPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGN 89
Query: 89 AGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVS-PAALVPGDP-EVACTAHKVTPVDPNA 146
+ +C +C R + +Q+ +Y+FP + L G P V C+ V P D
Sbjct: 90 EHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFD--R 147
Query: 147 LSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQA 206
L LL G ++ + L E+ + + E VT P+ + L C+A
Sbjct: 148 LEIDLLKGDHLMKSQEFL------EDADRKSLETKSLEVT----FTPVIEDIGKVLVCRA 197
Query: 207 TMRLPGLELSHRQAIPASKPAGDQLPAALWTSSAVLGL 244
L + ++P + A +L + + V+ +
Sbjct: 198 K-----LHIDEMDSVPTVRQAVKELQVYISPKNTVISV 230
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 39.7 bits (91), Expect = 0.003
Identities = 50/173 (28%), Positives = 63/173 (36%), Gaps = 19/173 (10%)
Query: 24 KPLQVEPPEP-VVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVR 82
KP+ V E +V GA C ++ W L ++ +LT+R
Sbjct: 1769 KPITVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPTRAMDFNGILTIR 1828
Query: 83 NASLSAAGTRVCVGSCGGRTFQHTVQLLVYA-----------FPDQLTVSPAALVPGDPE 131
N LS AGT VC GS Q T L V A P QLTV P L E
Sbjct: 1829 NVQLSDAGTYVCTGSNMFAMDQGTATLHVQASGTLSAPVVSIHPPQLTVQPGQLA----E 1884
Query: 132 VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFR 184
C+A T L ++ GGQ AQ G ++ EP L R
Sbjct: 1885 FRCSA---TGSPTPTLEWTGGPGGQLPAKAQIHGGILRLPAVEPTDQAQYLCR 1934
Score = 35.8 bits (81), Expect = 0.046
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 31 PEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT-----GRSVLTVRNAS 85
PE V V +G + L C ++ + +S +W + ++ ++ T +VL + +A
Sbjct: 3118 PEGPVWVKVGKAVTLEC-VSAGEPRSSARWTRISSTPAKLEQRTYGLMDSHAVLQISSAK 3176
Query: 86 LSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVPGDPEVACTAHKVT 140
S AGT VC+ T Q V+++ V A+ PG P+V ++T
Sbjct: 3177 PSDAGTYVCLAQNALGTAQKQVEVI---------VDTGAMAPGAPQVQAEEAELT 3222
Score = 30.8 bits (68), Expect = 1.5
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 34 VVAVALGASRQLTCRLACADRGASVQWRGLDTSL--GAVQSDTGRSVLTVRNASLSAAGT 91
V V +G + + C LA D V W + L G VQS V+ + + L+ AG
Sbjct: 3497 VQTVVVGHAVEFEC-LALGDPKPQVTWSKVGGHLRPGIVQSG---GVVRIAHVELADAGQ 3552
Query: 92 RVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVP 127
C + T Q V LLV A P Q+++ VP
Sbjct: 3553 YRCTATNAAGTTQSHVLLLVQALP-QISMPQEVRVP 3587
>gi|33519481 neural cell adhesion molecule 2 precursor [Homo
sapiens]
Length = 837
Score = 39.7 bits (91), Expect = 0.003
Identities = 46/139 (33%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 7 LLLAGLLGLLL--GQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRG-- 62
LL LLGLL+ GQ+L LQV V +++G S+ TC S+ W
Sbjct: 4 LLSFYLLGLLVSSGQAL----LQVTISLSKVELSVGESKFFTC--TAIGEPESIDWYNPQ 57
Query: 63 ----LDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGS-CGGRTFQHTVQLLVY-AFPD 116
+ T VQ + RS LT+ NA++ AG C + G+T + TV L +Y
Sbjct: 58 GEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTF 117
Query: 117 QLTVSPAALVPG-DPEVAC 134
+ VSP G D EV C
Sbjct: 118 REVVSPQEFKQGEDAEVVC 136
>gi|189571583 intercellular adhesion molecule 5 precursor [Homo
sapiens]
Length = 924
Score = 37.0 bits (84), Expect = 0.021
Identities = 49/166 (29%), Positives = 68/166 (40%), Gaps = 19/166 (11%)
Query: 4 GLALLLAGL-----LGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACA--DRGA 56
GL L GL LGL ++ +P + V V G S L C C +RG
Sbjct: 7 GLRRALLGLWAALGLGLFGLSAVSQEPFWADLQPRVAFVERGGSLWLNCSTNCPRPERG- 65
Query: 57 SVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTR-VCVGSCGGRTFQHTVQLLVYAFP 115
GL+TSL + G L + + T+ VC C RT Q + + P
Sbjct: 66 -----GLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRP 120
Query: 116 DQLTVSPAALVPGDP--EVACTAHKVTPVDPNA-LSFSLLVGGQEL 158
D++ + P L P P E + +V P A L+ +LL G QEL
Sbjct: 121 DRVELMP--LPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQEL 164
>gi|27262659 colony stimulating factor 1 receptor precursor [Homo
sapiens]
Length = 972
Score = 36.6 bits (83), Expect = 0.027
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 11 GLLGLLL------GQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLD 64
G+L LLL GQ + V +EP P + V GA T L C G SV+W G
Sbjct: 4 GVLLLLLVATAWHGQGIPV----IEPSVPELVVKPGA----TVTLRCVGNG-SVEWDGPP 54
Query: 65 TSLGAVQSDTGRSVLTVRNASLSAAGTRVC 94
+ + SD S+L+ NA+ GT C
Sbjct: 55 SPHWTLYSDGSSSILSTNNATFQNTGTYRC 84
>gi|167614500 lymphocyte-activation protein 3 precursor [Homo
sapiens]
Length = 525
Score = 36.6 bits (83), Expect = 0.027
Identities = 69/260 (26%), Positives = 95/260 (36%), Gaps = 42/260 (16%)
Query: 26 LQVEPPEPVVAVALGASRQ-LTCRLACADRGAS---VQWR----GLDTSLGAVQSDTGRS 77
L +EPP P+ A SR L CRL S +W G D V D G
Sbjct: 260 LGLEPPTPLTVYAGAGSRVGLPCRLPAGVGTRSFLTAKWTPPGGGPDL---LVTGDNGDF 316
Query: 78 VLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVPGDPEVACTAH 137
L + + S + AGT C + TV L + + SP +L ++ C
Sbjct: 317 TLRLEDVSQAQAGTYTCHIHLQEQQLNATVTLAIITVTPKSFGSPGSL----GKLLC--- 369
Query: 138 KVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPL-GT 196
+VTP V GQE +L Q P + +++ W+ G
Sbjct: 370 EVTP-----------VSGQERFVWSSLDTPSQRSFSGPWLEAQEAQLLSQPWQCQLYQGE 418
Query: 197 PVPPALYCQATMRLPGLELSHRQAIPASKPAGDQLPAALWTSSAVLGLLLLALPT--YHL 254
+ A + PG + S R P + PAG L L+ VL LLLL +HL
Sbjct: 419 RLLGAAVYFTELSSPGAQRSGR--APGALPAGHLL---LFLILGVLSLLLLVTGAFGFHL 473
Query: 255 WKRCRH-----LAEDDTHPP 269
W+R E HPP
Sbjct: 474 WRRQWRPRRFSALEQGIHPP 493
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 35.4 bits (80), Expect = 0.060
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 29/147 (19%)
Query: 115 PDQLTVS-PAALVPGDPEVACTAHK-VTPVDP--------NALSFSLLVGGQEL------ 158
P Q+ S P AL+PGDP+ ++ +P P L++ +L GQ L
Sbjct: 145 PPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQL 204
Query: 159 --EGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVP-------PALYCQATMR 209
+G + L P +Q+++++ Q + + ++ + P P P PAL
Sbjct: 205 AVQGKRTL-PGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPS 263
Query: 210 LPGLEL---SHRQAIPASKPAGDQLPA 233
PG EL S Q +P P G PA
Sbjct: 264 GPGPELSGPSTPQKLPVPAPGGRPSPA 290
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 35.4 bits (80), Expect = 0.060
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 29/147 (19%)
Query: 115 PDQLTVS-PAALVPGDPEVACTAHK-VTPVDP--------NALSFSLLVGGQEL------ 158
P Q+ S P AL+PGDP+ ++ +P P L++ +L GQ L
Sbjct: 145 PPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQL 204
Query: 159 --EGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVP-------PALYCQATMR 209
+G + L P +Q+++++ Q + + ++ + P P P PAL
Sbjct: 205 AVQGKRTL-PGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPS 263
Query: 210 LPGLEL---SHRQAIPASKPAGDQLPA 233
PG EL S Q +P P G PA
Sbjct: 264 GPGPELSGPSTPQKLPVPAPGGRPSPA 290
>gi|58331253 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform a [Homo sapiens]
Length = 6620
Score = 33.9 bits (76), Expect = 0.18
Identities = 33/101 (32%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 35 VAVALGASRQLTCRLACADRGASVQWR--GLDTSLGA---VQSDTGRSVLTVRNASLSAA 89
V L QL L+ D+ A+V W G S G VQ+ GR VL VR+ + A
Sbjct: 716 VLARLHEEAQLLAELS--DQAAAVTWLKDGRTLSPGPKYEVQASAGRRVLLVRDVARDDA 773
Query: 90 GTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVPGDP 130
G CV G +Q +VQ L + S V G P
Sbjct: 774 GLYECVSRGGRIAYQLSVQGLARFLHKDMAGSCVDAVAGGP 814
>gi|148833506 obscurin, cytoskeletal calmodulin and
titin-interacting RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 33.9 bits (76), Expect = 0.18
Identities = 33/101 (32%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 35 VAVALGASRQLTCRLACADRGASVQWR--GLDTSLGA---VQSDTGRSVLTVRNASLSAA 89
V L QL L+ D+ A+V W G S G VQ+ GR VL VR+ + A
Sbjct: 716 VLARLHEEAQLLAELS--DQAAAVTWLKDGRTLSPGPKYEVQASAGRRVLLVRDVARDDA 773
Query: 90 GTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVPGDP 130
G CV G +Q +VQ L + S V G P
Sbjct: 774 GLYECVSRGGRIAYQLSVQGLARFLHKDMAGSCVDAVAGGP 814
>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
Length = 1235
Score = 33.1 bits (74), Expect = 0.30
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 21/94 (22%)
Query: 163 ALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIP 222
AL P +EEEEE +G P+GTP P C + P +H + P
Sbjct: 894 ALTPVPEEEEEEEEG--------------APIGTPRDPGDGCPSPDIPPEPPPTHLRPCP 939
Query: 223 ASKPAG-------DQLPAALWTSSAVLGLLLLAL 249
AS+ G L A+ +SS +L LLLL L
Sbjct: 940 ASQLPGLLSHGLLAGLSFAVGSSSGLLPLLLLLL 973
>gi|67010025 Sp4 transcription factor [Homo sapiens]
Length = 784
Score = 32.3 bits (72), Expect = 0.51
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 18 GQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRS 77
GQ++Q +Q +P + V A+ + Q+ R + W+ + VQ+ S
Sbjct: 430 GQTIQT--IQQQPLQNVQLQAVNPT-QVLIRAPTLTPSGQISWQTVQ-----VQNIQSLS 481
Query: 78 VLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVP 127
L V+NA LS T V S GG T + V P L + A VP
Sbjct: 482 NLQVQNAGLSQQLTITPVSSSGGTTLAQIAPVAVAGAPITLNTAQLASVP 531
>gi|167466207 intercellular adhesion molecule 3 precursor [Homo
sapiens]
Length = 547
Score = 32.0 bits (71), Expect = 0.67
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 26 LQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNAS 85
L+VEP PV++ G S + C C S + L+TSL +G ++
Sbjct: 34 LRVEPQNPVLSA--GGSLFVNCSTDCP----SSEKIALETSLSKELVASGMGWAAFNLSN 87
Query: 86 LSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVPGDP 130
++ +C C G + + VY P+++ ++P L P P
Sbjct: 88 VTGNSRILCSVYCNGSQITGSSNITVYRLPERVELAP--LPPWQP 130
>gi|4504561 intercellular adhesion molecule 4 isoform 1 precursor
[Homo sapiens]
Length = 271
Score = 31.6 bits (70), Expect = 0.87
Identities = 55/231 (23%), Positives = 86/231 (37%), Gaps = 20/231 (8%)
Query: 25 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNA 84
P V VAV G S QL C +C Q L T L ++ G ++ +
Sbjct: 47 PFWVRMSPEFVAVQPGKSVQLNCSNSC----PQPQNSSLRTPLRQGKTLRGPGWVSYQLL 102
Query: 85 SLSA-AGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVPGDPEVACTAHKVTPVD 143
+ A + C+ +C G+T T ++ Y P + + P L + C +V PV
Sbjct: 103 DVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPV- 161
Query: 144 PNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALY 203
L +L G + + E E G + +T + P P +
Sbjct: 162 -GYLVVTLRHGSRVI---------YSESLERFTGLDLANVTLTYEFAAGPRDFWQP--VI 209
Query: 204 CQATMRLPGLELSHRQAIPASKPAGDQLPAALWTSS--AVLGLLLLALPTY 252
C A + L GL + + A A P AL + S A++G+LL Y
Sbjct: 210 CHARLNLDGLVVRNSSAPITLMLAWSPAPTALASGSIAALVGILLTVGAAY 260
>gi|33186895 selenoprotein V [Homo sapiens]
Length = 346
Score = 31.6 bits (70), Expect = 0.87
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 189 WRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPASKPAGDQLPAALWTSSAVLGLLLLA 248
W P+ TPVP + + P L+ +PA PA QL A + + VL L
Sbjct: 92 WIPTPVPTPVP--VRNPTPVPTPARTLTPPVRVPAPAPA--QLLAGIRAALPVLDSYLAP 147
Query: 249 L----PTYHLWKRCRHLAEDDTHPPASLRLLPQVSAWAG 283
P L E+D P SL+L+P VS+ AG
Sbjct: 148 ALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPSVSSEAG 186
>gi|144953876 signal-regulatory protein beta 1 isoform 1 precursor
[Homo sapiens]
Length = 398
Score = 30.4 bits (67), Expect = 1.9
Identities = 52/185 (28%), Positives = 71/185 (38%), Gaps = 34/185 (18%)
Query: 7 LLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW------ 60
LL+ LLG L G + + + LQV PE V+VA G S L C + + W
Sbjct: 15 LLMTLLLGRLTGVAGEDE-LQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGA 73
Query: 61 ---------RGLDTSLGAVQSDTGRSVL----TVRNASLSAAGTRVCV----GSCGGRTF 103
G + V T R+ L ++ N + + AGT CV GS F
Sbjct: 74 GRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEF 133
Query: 104 QH--TVQLLVYAFPDQLTVSPAALVPGDPE----VACTAHKVTPVDPNALSFSLLVGGQE 157
+ +L V A P VS A V PE C +H +P D ++ G E
Sbjct: 134 KSGAGTELSVRAKPSAPVVSGPA-VRATPEHTVSFTCESHGFSPRD---ITLKWFKNGNE 189
Query: 158 LEGAQ 162
L Q
Sbjct: 190 LSDFQ 194
>gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3874
Score = 30.4 bits (67), Expect = 1.9
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 25 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW----RGLDTSLGAVQSDTGRSVLT 80
P +EP AV AS L C LA V W + + + +G S GR VL
Sbjct: 694 PPNIEPGPVNKAVLENASVTLEC-LASGVPPPDVSWFKGHQPVSSWMGVTVSVDGR-VLR 751
Query: 81 VRNASLSAAGTRVCVGS--CGGRTFQHTVQLLVYAFPDQLTVSPAALVPG 128
+ A LS AG+ CV S G ++ +++ V P ++T+ P+ +PG
Sbjct: 752 IEQAQLSDAGSYRCVASNVAGSTELRYGLRVNV---PPRITLPPS--LPG 796
>gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 5065
Score = 30.4 bits (67), Expect = 1.9
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 25 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW----RGLDTSLGAVQSDTGRSVLT 80
P +EP AV AS L C LA V W + + + +G S GR VL
Sbjct: 1885 PPNIEPGPVNKAVLENASVTLEC-LASGVPPPDVSWFKGHQPVSSWMGVTVSVDGR-VLR 1942
Query: 81 VRNASLSAAGTRVCVGS--CGGRTFQHTVQLLVYAFPDQLTVSPAALVPG 128
+ A LS AG+ CV S G ++ +++ V P ++T+ P+ +PG
Sbjct: 1943 IEQAQLSDAGSYRCVASNVAGSTELRYGLRVNV---PPRITLPPS--LPG 1987
>gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3783
Score = 30.4 bits (67), Expect = 1.9
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 25 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW----RGLDTSLGAVQSDTGRSVLT 80
P +EP AV AS L C LA V W + + + +G S GR VL
Sbjct: 603 PPNIEPGPVNKAVLENASVTLEC-LASGVPPPDVSWFKGHQPVSSWMGVTVSVDGR-VLR 660
Query: 81 VRNASLSAAGTRVCVGS--CGGRTFQHTVQLLVYAFPDQLTVSPAALVPG 128
+ A LS AG+ CV S G ++ +++ V P ++T+ P+ +PG
Sbjct: 661 IEQAQLSDAGSYRCVASNVAGSTELRYGLRVNV---PPRITLPPS--LPG 705
>gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens]
Length = 1843
Score = 30.4 bits (67), Expect = 1.9
Identities = 56/227 (24%), Positives = 85/227 (37%), Gaps = 26/227 (11%)
Query: 21 LQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGL---DTSLGAVQSDTGRS 77
LQ+KPL++ P + +L LAC G SV GL +T G V T S
Sbjct: 855 LQLKPLRLPTPGSSGNIE-DMDPELQQLLACG-LGTSVARTGLVMQETEQGLVAL-TAYS 911
Query: 78 VLTVRNASLSAAGTRVCVGSC---GGRTFQHTVQLLVYAFPDQLTVSPAA---------- 124
+ + S + + SC G + H+++ A P + S A
Sbjct: 912 LQPRLTSKASERSSVQLLASCIDKGDLSGLHSLRWEPPADPSPVPASEGAQSLHPTESII 971
Query: 125 -LVPGDPEVAC---TAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED 180
+ P DP + A TP P A+ ++ + G+ AQ E QE+ Q
Sbjct: 972 HVPPLDPSMGMGHLRASGATPCPPQAIGKAVPLAGEAAAPAQLQNTEKQEDSHSGQKGMA 1031
Query: 181 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELS--HRQAIPASK 225
VL + PP G P L ++R+ E H+Q + K
Sbjct: 1032 VLGKSEGATTTPP-GPGAPDLLAAMQSLRMATAEAQSLHQQVLNKHK 1077
>gi|189409125 transcription factor Dp family, member 3 [Homo
sapiens]
Length = 405
Score = 30.4 bits (67), Expect = 1.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 154 GGQELEGAQALGPEVQEEEEEPQGDEDV 181
GG + G++ P V+EEEEE D+D+
Sbjct: 371 GGSQYSGSRVETPAVEEEEEEDNNDDDL 398
>gi|89274169 cytokine induced apoptosis inhibitor 1 [Homo sapiens]
Length = 312
Score = 30.4 bits (67), Expect = 1.9
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 167 EVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSH--------- 217
EV+E + EP E+V V E LG L+ Q T + P E+
Sbjct: 126 EVKELQREPLTPEEVQ-SVREH-----LGHESDNLLFVQITGKKPNFEVGSSRQLKLSIT 179
Query: 218 RQAIPASKPAGDQLPAALWTSSA 240
+++ P+ KPA D A LWT SA
Sbjct: 180 KKSSPSVKPAVDPAAAKLWTLSA 202
>gi|12965172 taste receptor, type 2, member 9 [Homo sapiens]
Length = 312
Score = 30.4 bits (67), Expect = 1.9
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 109 LLVYAFPDQLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGA 161
LL+ +P L ++ +AL+P V VT + P++ SF L++G +L A
Sbjct: 240 LLIVYYPVFLVMTSSALIPQGKLVLMIGDIVTVIFPSSHSFILIMGNSKLREA 292
>gi|139948432 adlican [Homo sapiens]
Length = 2828
Score = 30.4 bits (67), Expect = 1.9
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 13/145 (8%)
Query: 10 AGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGA-------SVQWRG 62
AG L+ + +KP + +V++ G + +L C A +G + G
Sbjct: 2622 AGHTERLVSLKVGLKPEANKQYHNLVSIINGETLKLPCTPPGAGQGRFSWTLPNGMHLEG 2681
Query: 63 LDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSP 122
T LG V S LTVR AS+ GT VC ++ ++V A+P ++T P
Sbjct: 2682 PQT-LGRV-SLLDNGTLTVREASVFDRGTYVCRMETEYGPSVTSIPVIVIAYPPRITSEP 2739
Query: 123 AALV---PGDP-EVACTAHKVTPVD 143
++ PG+ ++ C A + D
Sbjct: 2740 TPVIYTRPGNTVKLNCMAMGIPKAD 2764
>gi|42542381 solute carrier family 28, member 1 isoform 1 [Homo
sapiens]
Length = 649
Score = 30.0 bits (66), Expect = 2.5
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 3 FGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRG 62
F L LA LGL+L SL + PE +V+ A G + AC+ +V WR
Sbjct: 152 FKRGLALAAFLGLVLWLSLDTS----QRPEQLVSFA-GICVFVALLFACSKHHCAVSWRA 206
Query: 63 LDTSLG 68
+ LG
Sbjct: 207 VSWGLG 212
>gi|169167742 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 494
Score = 30.0 bits (66), Expect = 2.5
Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 130 PEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEE-------EPQGDEDVL 182
P VA V P P ++ L + L A GP+ QEE+E G ED
Sbjct: 318 PAVAIVCQTVCPESPPSVGKRRLAVQEILAARAARGPQAQEEDEVGGAGQRGRTGQEDAD 377
Query: 183 FRV-TERWRLPP-LGTPVPPALYCQATMRLPGLELSHRQAIP 222
R + R LPP LG+ P A + LP L R P
Sbjct: 378 SREGSPRAGLPPALGSRGPAAPAPRKASLLPLQRLRRRSVRP 419
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 30.0 bits (66), Expect = 2.5
Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 130 PEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEE-------EPQGDEDVL 182
P VA V P P ++ L + L A GP+ QEE+E G ED
Sbjct: 830 PAVAIVCQTVCPESPPSVGKRRLAVQEILAARAARGPQAQEEDEVGGAGQRGRTGQEDAD 889
Query: 183 FRV-TERWRLPP-LGTPVPPALYCQATMRLPGLELSHRQAIP 222
R + R LPP LG+ P A + LP L R P
Sbjct: 890 SREGSPRAGLPPALGSRGPAAPAPRKASLLPLQRLRRRSVRP 931
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,287,719
Number of Sequences: 37866
Number of extensions: 678426
Number of successful extensions: 2802
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 2767
Number of HSP's gapped (non-prelim): 92
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.