Guide to the Human Genome
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Name: SLC28A1 Sequence: fasta or formatted (649aa) NCBI GI: 42542381
Description:

solute carrier family 28, member 1 isoform 1

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [175aa] solute carrier family 28, member 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         67           2
 C cysteine            3.1         20           2
 D aspartate           2.8         18           1
 E glutamate           5.2         34           2
 F phenylalanine       6.5         42           2
 G glycine             6.6         43           2
 H histidine           1.2          8           2
 I isoleucine          5.4         35           2
 K lysine              2.9         19           1
 L leucine            14.3         93           3
 M methionine          2.5         16           1
 N asparagine          2.3         15           1
 P proline             3.5         23           1
 Q glutamine           3.7         24           1
 R arginine            5.4         35           3
 S serine              8.0         52           4
 T threonine           4.2         27           2
 V valine              7.9         51           2
 W tryptophan          2.2         14           1
 Y tyrosine            2.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 28, member 1 isoform 1 
SLC28A2               0.644   solute carrier family 28 (sodium-coupled nucleoside...
SLC28A3               0.403   concentrative Na+-nucleoside cotransporter 
SLC28A1               0.229   solute carrier family 28, member 1 isoform 2 
APLNR                 0.006   apelin receptor 
SLC18A1               0.006   solute carrier family 18 (vesicular monoamine), mem...
SLC18A1               0.006   solute carrier family 18 (vesicular monoamine), mem...
SLC18A1               0.006   solute carrier family 18 (vesicular monoamine), mem...
SLC18A1               0.006   solute carrier family 18 (vesicular monoamine), membe...
MADCAM1               0.004   mucosal vascular addressin cell adhesion molecule 1...
MADCAM1               0.004   mucosal vascular addressin cell adhesion molecule 1 ...
ZZEF1                 0.004   zinc finger, ZZ type with EF hand domain 1 
PIGS                  0.004   phosphatidylinositol glycan anchor biosynthesis, cla...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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