Guide to the Human Genome
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Name: CSF1R Sequence: fasta or formatted (972aa) NCBI GI: 27262659
Description:

colony stimulating factor 1 receptor precursor

Referenced in:

Macrophages and Monocytes
Retroviral Oncogene Homologs
Hematopoiesis and Erythrocytes
Receptor Tyrosine Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         64           2
 C cysteine            2.2         21           2
 D aspartate           4.4         43           2
 E glutamate           5.7         55           3
 F phenylalanine       4.0         39           2
 G glycine             7.1         69           2
 H histidine           2.9         28           1
 I isoleucine          3.8         37           2
 K lysine              4.2         41           2
 L leucine            10.7        104          10
 M methionine          1.9         18           1
 N asparagine          4.6         45           2
 P proline             6.2         60           2
 Q glutamine           5.1         50           2
 R arginine            4.1         40           2
 S serine              8.2         80           4
 T threonine           5.1         50           2
 V valine              7.7         75           3
 W tryptophan          1.7         17           1
 Y tyrosine            3.7         36           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   colony stimulating factor 1 receptor precursor [Homo... 
KIT                   0.328   v-kit Hardy-Zuckerman 4 feline sarcoma viral oncoge...
KIT                   0.326   v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene...
PDGFRA                0.238   platelet-derived growth factor receptor alpha precurs...
PDGFRB                0.237   platelet-derived growth factor receptor beta precurso...
FLT3                  0.213   fms-related tyrosine kinase 3 
FLT1                  0.171   fms-related tyrosine kinase 1 isoform 1 precursor [...
KDR                   0.160   kinase insert domain receptor precursor 
FLT4                  0.159   fms-related tyrosine kinase 4 isoform 1 precursor [...
FLT4                  0.159   fms-related tyrosine kinase 4 isoform 2 precursor [...
FGFR4                 0.130   fibroblast growth factor receptor 4 isoform 1 precur...
FGFR4                 0.130   fibroblast growth factor receptor 4 isoform 1 precur...
FGFR3                 0.130   fibroblast growth factor receptor 3 isoform 1 precurs...
FGFR3                 0.129   fibroblast growth factor receptor 3 isoform 3 precu...
FGFR2                 0.128   fibroblast growth factor receptor 2 isoform 6 precu...
FGFR2                 0.128   fibroblast growth factor receptor 2 isoform 1 precu...
FGFR2                 0.127   fibroblast growth factor receptor 2 isoform 8 precu...
FGFR2                 0.127   fibroblast growth factor receptor 2 isoform 5 precu...
FGFR3                 0.127   fibroblast growth factor receptor 3 isoform 2 precur...
FGFR1                 0.127   fibroblast growth factor receptor 1 isoform 4 precur...
FGFR1                 0.127   fibroblast growth factor receptor 1 isoform 3 precur...
FGFR1                 0.127   fibroblast growth factor receptor 1 isoform 2 precur...
FGFR1                 0.127   fibroblast growth factor receptor 1 isoform 1 precu...
FGFR2                 0.127   fibroblast growth factor receptor 2 isoform 2 precu...
FGFR2                 0.126   fibroblast growth factor receptor 2 isoform 9 precu...
FGFR2                 0.126   fibroblast growth factor receptor 2 isoform 3 precu...
FGFR4                 0.126   fibroblast growth factor receptor 4 isoform 2 precur...
FGFR2                 0.123   fibroblast growth factor receptor 2 isoform 7 precu...
FGFR2                 0.123   fibroblast growth factor receptor 2 isoform 4 precu...
RET                   0.122   ret proto-oncogene isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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