VCAN 10016

Name: VCAN	Sequence: fasta or formatted (655aa)		NCBI GI: 187607300
Description: versican isoform 2		Referenced in: Protein Glycosylation Extracellular Matrix
Other entries for this name: alt prot [3396aa] versican isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.3 41 2 C cysteine 5.0 33 1 D aspartate 6.4 42 1 E glutamate 4.9 32 2 F phenylalanine 4.4 29 2 G glycine 7.5 49 3 H histidine 3.2 21 1 I isoleucine 3.4 22 2 K lysine 5.2 34 2 L leucine 6.1 40 2 M methionine 1.7 11 1 N asparagine 4.3 28 1 P proline 4.9 32 3 Q glutamine 4.1 27 1 R arginine 6.1 40 2 S serine 6.0 39 3 T threonine 6.7 44 2 V valine 6.7 44 2 W tryptophan 2.3 15 1 Y tyrosine 4.9 32 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 versican isoform 2 VCAN 0.503 versican isoform 1 NCAN 0.256 chondroitin sulfate proteoglycan 3 ACAN 0.243 aggrecan isoform 2 precursor ACAN 0.243 aggrecan isoform 1 precursor BCAN 0.214 brevican isoform 2 BCAN 0.214 brevican isoform 1 HAPLN1 0.139 hyaluronan and proteoglycan link protein 1 HAPLN3 0.139 hyaluronan and proteoglycan link protein 3 HAPLN2 0.122 brain link protein-1 HAPLN4 0.122 hyaluronan and proteoglycan link protein 4 MRC2 0.061 mannose receptor, C type 2 NOTCH2 0.060 notch 2 preproprotein JAG2 0.054 jagged 2 isoform b precursor JAG2 0.053 jagged 2 isoform a precursor NOTCH3 0.053 Notch homolog 3 NOTCH1 0.053 notch1 preproprotein SVEP1 0.052 polydom SLIT2 0.049 slit homolog 2 DLL4 0.049 delta-like 4 protein precursor NOTCH4 0.049 notch4 preproprotein JAG1 0.048 jagged 1 precursor CLEC10A 0.048 C-type lectin, superfamily member 14 isoform 1 [Homo... CLEC10A 0.048 C-type lectin, superfamily member 14 isoform 2 [Homo... DLL1 0.048 delta-like 1 CRB2 0.048 crumbs homolog 2 COLEC12 0.048 collectin sub-family member 12 SNED1 0.048 6720455I24Rik homolog SLIT3 0.047 slit homolog 3 DLL3 0.046 delta-like 3 protein isoform 1 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.