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Search of human proteins with 113412653
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113412653 PREDICTED: hypothetical protein [Homo sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113412653 PREDICTED: hypothetical protein [Homo sapiens] 245 6e-66
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 38 0.002
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 38 0.002
gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 37 0.004
gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 37 0.004
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 36 0.006
gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens] 36 0.007
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 35 0.013
gi|4758410 fragile X mental retardation syndrome related protein... 35 0.013
gi|182765442 homeobox A10 isoform a [Homo sapiens] 34 0.022
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 34 0.022
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 34 0.028
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 34 0.028
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 34 0.028
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 34 0.028
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 33 0.037
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 33 0.037
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 33 0.037
gi|239752280 PREDICTED: similar to family with sequence similari... 33 0.063
gi|210032463 family with sequence similarity 48, member B2 [Homo... 33 0.063
gi|169160624 PREDICTED: hypothetical protein [Homo sapiens] 32 0.082
gi|7661936 scaffold attachment factor B2 [Homo sapiens] 32 0.082
gi|4507565 tumor necrosis factor receptor superfamily, member 11... 32 0.11
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 32 0.11
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 32 0.11
gi|55741677 SET domain containing 1A [Homo sapiens] 32 0.14
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 32 0.14
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 31 0.18
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 31 0.18
gi|4506501 regulatory factor X-associated protein [Homo sapiens] 31 0.18
>gi|113412653 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 245 bits (625), Expect = 6e-66
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MRAPPSQETADNQGSFPGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKE 60
MRAPPSQETADNQGSFPGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKE
Sbjct: 1 MRAPPSQETADNQGSFPGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKE 60
Query: 61 GCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPRGYAQLRS 117
GCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPRGYAQLRS
Sbjct: 61 GCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPRGYAQLRS 117
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 38.1 bits (87), Expect = 0.002
Identities = 34/122 (27%), Positives = 43/122 (35%), Gaps = 17/122 (13%)
Query: 2 RAPPSQETADNQGSFPGG-------QREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFK 54
+ PP Q QG P G Q + +R G QG P QGG+ G P +
Sbjct: 58 QGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGK----PQGPPAQ 113
Query: 55 GGSLKE------GCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGEL 108
GGS + G QG + G QG P G + +P P P G
Sbjct: 114 GGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRP 173
Query: 109 PR 110
R
Sbjct: 174 SR 175
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/55 (34%), Positives = 22/55 (40%)
Query: 57 SLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPRG 111
SL G QG S + G QG P G Q GG + P P G P+G
Sbjct: 30 SLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 84
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 37.7 bits (86), Expect = 0.002
Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 17/121 (14%)
Query: 2 RAPPSQETADNQGSFPGG-------QREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFK 54
+ PP Q QG P G Q + +R G QG P QGG G P
Sbjct: 180 QGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGN---QPQGPPPP 236
Query: 55 GGSLKEGCTQGTSTRAGP----CTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPR 110
G + QG + GP QG P QGGS + +S+ P + P P G P+
Sbjct: 237 PGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGS-KSQSARSPPGK--PQGPPQQEGNNPQ 293
Query: 111 G 111
G
Sbjct: 294 G 294
Score = 35.8 bits (81), Expect = 0.007
Identities = 37/119 (31%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 2 RAPPSQETADNQGSFPGG-------QREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFK 54
+ PP Q QG P G Q + +R G QG P QGG G P
Sbjct: 58 QGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGN---QPQGPPPP 114
Query: 55 GGSLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRP--FPAPSPAHAGELPRG 111
G + QG + GP G P QG Q + S PR P P P G P+G
Sbjct: 115 PGKPQGPPPQGGNRPQGPPPPGKP-QGPPPQGDKS-RSPRSPPGKPQGPPPQGGNQPQG 171
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 32 GSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGG 91
G QG P QG + R S G QG + G QG P G Q G
Sbjct: 136 GKPQGPPPQGDKSRSPRS---------PPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 186
Query: 92 GPRRPFPAPSPAHAGELPRG 111
G + P P G P+G
Sbjct: 187 GKKPQGPPPPGKPQGPPPQG 206
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 32 GSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGG 91
G QG P QG + R S S G QG + G QG P G Q G
Sbjct: 197 GKPQGPPPQGDKSRSSQS---------PPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 247
Query: 92 GPRRPFPAPSPAHAGELPRGYAQLRS 117
G + P P G +G ++ +S
Sbjct: 248 GNKPQGPPPPGKPQGPPAQGGSKSQS 273
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/55 (34%), Positives = 22/55 (40%)
Query: 57 SLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPRG 111
SL G QG S + G QG P G Q GG + P P G P+G
Sbjct: 30 SLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 84
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 2 RAPPSQETADNQGSFPGGQREAAREEAQRDGSTQGD--PTQGGR 43
+ PP QE + QG P + +A G QG P QGGR
Sbjct: 282 QGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGR 325
>gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 36.6 bits (83), Expect = 0.004
Identities = 39/124 (31%), Positives = 50/124 (40%), Gaps = 21/124 (16%)
Query: 11 DNQGSFPGGQRE--AAREEAQRDGSTQGDPTQGGRIRV-------STSGGPFKGG--SLK 59
+ QG GGQ+ +A + Q DG QG P QGG+ + G P +GG
Sbjct: 45 ERQGPPLGGQQSQPSAGDGNQNDGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPP 104
Query: 60 EGCTQGTSTRAG------PCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPRGYA 113
+G QG + G QG P QGG Q G P P P G P+G
Sbjct: 105 QGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ----GPPPPPPGKPQGPPPQGGRPQGPP 160
Query: 114 QLRS 117
Q +S
Sbjct: 161 QGQS 164
Score = 33.1 bits (74), Expect = 0.048
Identities = 30/98 (30%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 2 RAPPSQETADNQG-----SFPGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGG 56
+ PP Q QG P G + G QG P QGG R G P +G
Sbjct: 71 QGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQGGHPR-PPRGRP-QGP 128
Query: 57 SLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPR 94
+ G QG QG P QGG Q G P+
Sbjct: 129 PQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQSPQ 166
>gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 36.6 bits (83), Expect = 0.004
Identities = 39/124 (31%), Positives = 50/124 (40%), Gaps = 21/124 (16%)
Query: 11 DNQGSFPGGQRE--AAREEAQRDGSTQGDPTQGGRIRV-------STSGGPFKGG--SLK 59
+ QG GGQ+ +A + Q DG QG P QGG+ + G P +GG
Sbjct: 45 ERQGPPLGGQQSQPSAGDGNQNDGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPP 104
Query: 60 EGCTQGTSTRAG------PCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPRGYA 113
+G QG + G QG P QGG Q G P P P G P+G
Sbjct: 105 QGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ----GPPPPPPGKPQGPPPQGGRPQGPP 160
Query: 114 QLRS 117
Q +S
Sbjct: 161 QGQS 164
Score = 33.1 bits (74), Expect = 0.048
Identities = 30/98 (30%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 2 RAPPSQETADNQG-----SFPGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGG 56
+ PP Q QG P G + G QG P QGG R G P +G
Sbjct: 71 QGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQGGHPR-PPRGRP-QGP 128
Query: 57 SLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPR 94
+ G QG QG P QGG Q G P+
Sbjct: 129 PQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQSPQ 166
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 36.2 bits (82), Expect = 0.006
Identities = 35/119 (29%), Positives = 43/119 (36%), Gaps = 13/119 (10%)
Query: 2 RAPPSQETADNQGSFPGG-------QREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFK 54
+ PP Q QG P G Q + +R G QG P QGG G P
Sbjct: 79 QGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGN---QPQGPPPP 135
Query: 55 GGSLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRP--FPAPSPAHAGELPRG 111
G + QG + GP G P QG Q ++ R P P P G P+G
Sbjct: 136 PGKPQGPPPQGGNKPQGPPPPGKP-QGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQG 193
Score = 35.0 bits (79), Expect = 0.013
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 32 GSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGG 91
G QG P QGG S+ P G QG + G QG P G Q G
Sbjct: 281 GKPQGPPPQGGSKSRSSRSPP--------GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 332
Query: 92 GPRRPFPAPSPAHAGELPRGYAQLRS 117
G + P P G P+G ++ RS
Sbjct: 333 GNKPQGPPPPGKPQGPPPQGGSKSRS 358
Score = 32.7 bits (73), Expect = 0.063
Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 32 GSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGG 91
G QG P QG S P G QG + G QG P G Q G
Sbjct: 219 GKPQGPPPQGDNKSQSARSPP--------GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 270
Query: 92 GPRRPFPAPSPAHAGELPRGYAQLRS 117
G + P P G P+G ++ RS
Sbjct: 271 GNKPQGPPPPGKPQGPPPQGGSKSRS 296
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 32 GSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGG 91
G QG P QG + R S G QG + G QG P G Q G
Sbjct: 96 GKPQGPPPQGDKSRSPRS---------PPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 146
Query: 92 GPRRPFPAPSPAHAGELPRGYAQLRS 117
G + P P G P+G + RS
Sbjct: 147 GNKPQGPPPPGKPQGPPPQGDNKSRS 172
Score = 31.2 bits (69), Expect = 0.18
Identities = 25/80 (31%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 32 GSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGG 91
G+ QG P QGG G P G QG + G QG P G Q G
Sbjct: 34 GNPQGAPPQGGN---KPQGPPSPPGK-----PQGPPPQGGNQPQGPPPPPGKPQGPPPQG 85
Query: 92 GPRRPFPAPSPAHAGELPRG 111
G + P P G P+G
Sbjct: 86 GNKPQGPPPPGKPQGPPPQG 105
Score = 30.4 bits (67), Expect = 0.31
Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 8/80 (10%)
Query: 32 GSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGG 91
G QG P QG S+ P G QG + G QG P G Q G
Sbjct: 157 GKPQGPPPQGDNKSRSSRSPP--------GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 208
Query: 92 GPRRPFPAPSPAHAGELPRG 111
G + P P G P+G
Sbjct: 209 GNKPQGPPPPGKPQGPPPQG 228
Score = 30.4 bits (67), Expect = 0.31
Identities = 31/118 (26%), Positives = 38/118 (32%), Gaps = 16/118 (13%)
Query: 2 RAPPSQETADNQGSFPGGQREAAREEAQRD--------GSTQGDPTQGGRIRVSTSGGPF 53
+ PP Q QG P G+ + + G QG P QGG G P
Sbjct: 202 QGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGN---QPQGPPP 258
Query: 54 KGGSLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPRG 111
G QG + G QG P G GG R +P G P+G
Sbjct: 259 PPGK-----PQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQG 311
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 57 SLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGGG--PRRPFPAPS-----PAHAGELP 109
SL G QG + G QG P G Q GG P+ P P P P G P
Sbjct: 30 SLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 89
Query: 110 RG 111
+G
Sbjct: 90 QG 91
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 2 RAPPSQETADNQGSFPGGQREAAREEAQRDGSTQGD--PTQGGR 43
+ PP QE + QG P + +A G QG P QGGR
Sbjct: 367 QGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGR 410
>gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens]
Length = 166
Score = 35.8 bits (81), Expect = 0.007
Identities = 39/124 (31%), Positives = 50/124 (40%), Gaps = 21/124 (16%)
Query: 11 DNQGSFPGGQRE--AAREEAQRDGSTQGDPTQGGRIRV-------STSGGPFKGG--SLK 59
+ QG GGQ+ +A + Q DG QG P QGG+ + G P +GG
Sbjct: 45 ERQGPPLGGQQSQPSAGDGNQDDGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPP 104
Query: 60 EGCTQGTSTRAG------PCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPRGYA 113
+G QG + G QG P QGG Q G P P P G P+G
Sbjct: 105 QGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ----GPPPPPPGKPQGPPPQGGRPQGPP 160
Query: 114 QLRS 117
Q +S
Sbjct: 161 QGQS 164
Score = 33.1 bits (74), Expect = 0.048
Identities = 30/98 (30%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 2 RAPPSQETADNQG-----SFPGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGG 56
+ PP Q QG P G + G QG P QGG R G P +G
Sbjct: 71 QGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQGGHPR-PPRGRP-QGP 128
Query: 57 SLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPR 94
+ G QG QG P QGG Q G P+
Sbjct: 129 PQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQSPQ 166
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 35.0 bits (79), Expect = 0.013
Identities = 34/118 (28%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 4 PPSQETADNQG-----SFPGGQREAAREEAQ----RDGSTQGDPTQGGRIRVSTSGGPFK 54
PP Q +QG P GQ ++Q R G +G P QGG + S GP
Sbjct: 81 PPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGG----NQSQGP-- 134
Query: 55 GGSLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAH-AGELPRG 111
+ G +G + G +QG P + G + GG + P P P G P+G
Sbjct: 135 --PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQG 190
Score = 34.3 bits (77), Expect = 0.022
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 17 PGGQREAAREEAQRD----GSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTSTRAGP 72
P G+R + QR G +G P QGG + S GP + G +G + G
Sbjct: 36 PEGRRPQGGNQPQRTPPPPGKPEGRPPQGG----NQSQGP----PPRPGKPEGPPPQGGN 87
Query: 73 CTQGVPMQGGSVQDESSGGGPRRPFPAPSPAH-AGELPRG 111
+QG P + G + + GG + P P P G P+G
Sbjct: 88 QSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQG 127
Score = 34.3 bits (77), Expect = 0.022
Identities = 32/119 (26%), Positives = 41/119 (34%), Gaps = 25/119 (21%)
Query: 4 PPSQETADNQGSFPGGQREAAREEAQRDGSTQGDPTQGGRIRVST-------SGGPFKGG 56
PP Q +QG P R G +G P QGG G P +GG
Sbjct: 186 PPPQGGNQSQGPPP------------RPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGG 233
Query: 57 SLKEGCT------QGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELP 109
+ +G QG + G Q P G GG P++P P P+ G P
Sbjct: 234 NKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPP 292
Score = 33.1 bits (74), Expect = 0.048
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 2 RAPPSQETADNQGSFPGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKEG 61
R PP + + G Q + R G +G P QGG + S GP + G
Sbjct: 49 RTPPPPGKPEGRPPQGGNQSQGP---PPRPGKPEGPPPQGG----NQSQGP----PPRPG 97
Query: 62 CTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAH-AGELPRG 111
+G + G +QG P + G + GG + P P P G P+G
Sbjct: 98 KPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQG 148
Score = 33.1 bits (74), Expect = 0.048
Identities = 30/112 (26%), Positives = 41/112 (36%), Gaps = 25/112 (22%)
Query: 4 PPSQETADNQGSFPGGQREAAREEAQRDGSTQGDPTQGGRIRVST-------SGGPFKGG 56
PP Q +QG P R G +G P QGG G P +GG
Sbjct: 144 PPPQGGNQSQGPPP------------RPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGG 191
Query: 57 SLKEGCT------QGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSP 102
+ +G +G + G +QG P + G + S GG + P P P
Sbjct: 192 NQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHP 243
>gi|4758410 fragile X mental retardation syndrome related protein 2
[Homo sapiens]
Length = 673
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 41 GGRIRVSTSGGPFKGGSLKEGCTQGTST-------RAGPCTQGVPMQGGSVQDESSGGGP 93
GGR R +GGP G S T + RAGP + P +G + +GG
Sbjct: 430 GGRGRGRRTGGPAYGPSSDVSTASETESEKREEPNRAGPGDRDPPTRGEESRRRPTGGRG 489
Query: 94 RRPFPAPSP 102
R P PAP P
Sbjct: 490 RGPPPAPRP 498
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 34.3 bits (77), Expect = 0.022
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 20/75 (26%)
Query: 52 PFKGGSLKEGCTQGTSTRAGPCTQGVPMQG--------GSVQDESSGGGPRR-----PFP 98
PF G +GC GTS+ GVP+ G G+ + SGGG + PFP
Sbjct: 190 PFPRGPPPDGCALGTSS-------GVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFP 242
Query: 99 APSPAHAGELPRGYA 113
A P +LP A
Sbjct: 243 AQPPGRGFDLPPALA 257
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 34.3 bits (77), Expect = 0.022
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 32 GSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTSTRAGPCTQG---VPMQGGSVQDES 88
G + G P GR R S+ P GG G G+++ G G V GG V S
Sbjct: 5 GPSGGGPGGSGRARTSSFAEPGGGGGGGGGGPGGSASGPGGTGGGKASVGAMGGGVGASS 64
Query: 89 SGGGP 93
SGGGP
Sbjct: 65 SGGGP 69
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 33.9 bits (76), Expect = 0.028
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 19 GQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTSTRAGPCTQGVP 78
G+R AAR+ +R G P +G + G +GG T R P T
Sbjct: 282 GERRAARQWRKRGGGPGVSPREGAQ------GEGVRGGVTPRARGSSTCLRPSPAT---- 331
Query: 79 MQGGSVQDESSGGGPRRPFPAPSPAHAGELPRGY 112
QGG+ GPR P+ A A E+P G+
Sbjct: 332 WQGGAPYRAIFAAGPRLSAPS---AEAEEVPGGH 362
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 33.9 bits (76), Expect = 0.028
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 19 GQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTSTRAGPCTQGVP 78
G+R AAR+ +R G P +G + G +GG T R P T
Sbjct: 376 GERRAARQWRKRGGGPGVSPREGAQ------GEGVRGGVTPRARGSSTCLRPSPAT---- 425
Query: 79 MQGGSVQDESSGGGPRRPFPAPSPAHAGELPRGY 112
QGG+ GPR P+ A A E+P G+
Sbjct: 426 WQGGAPYRAIFAAGPRLSAPS---AEAEEVPGGH 456
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 33.9 bits (76), Expect = 0.028
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 19 GQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTSTRAGPCTQGVP 78
G+R AAR+ +R G P +G + G +GG T R P T
Sbjct: 376 GERRAARQWRKRGGGPGVSPREGAQ------GEGVRGGVTPRARGSSTCLRPSPAT---- 425
Query: 79 MQGGSVQDESSGGGPRRPFPAPSPAHAGELPRGY 112
QGG+ GPR P+ A A E+P G+
Sbjct: 426 WQGGAPYRAIFAAGPRLSAPS---AEAEEVPGGH 456
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 33.9 bits (76), Expect = 0.028
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 31 DGSTQGDPTQGGRI--RVSTSGGPFKGGSLKEGCTQGTSTRAGPCTQGVPMQG---GSVQ 85
DG+ G P QGGR+ R + G S G +G+S G QG P + S Q
Sbjct: 508 DGAGLGGPEQGGRLTPRARSEEGASSDSSASTGSHEGSSEWGGR-PQGCPGKARAETSQQ 566
Query: 86 DESSGGGPRRPFPAPSPAHAGEL 108
+ S GG P P + S + +L
Sbjct: 567 EASEGGDPASPALSLSSLRSDDL 589
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 4 PPSQETADNQGSFPGGQREAAREE--AQRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKEG 61
P Q + + GS + AR + ++G+ Q PT S GP G S +
Sbjct: 861 PCPQRRSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPTP--------SPGPNSGASRRSS 912
Query: 62 CTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSP 102
+QG +R + + GG E + G P SP
Sbjct: 913 ASQGAGSRGLSEEKTLRSGGGPQGQEEASGVSPSSLPRSSP 953
Score = 27.3 bits (59), Expect = 2.6
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 29 QRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTSTRAGPCTQGVPMQGGSVQDES 88
QR S+ G G ST+ GP GGS +EG Q GP P G S + +
Sbjct: 864 QRRSSSCGST---GSSHQSTARGP--GGSPQEGTRQ-----PGPTPSPGPNSGASRRSSA 913
Query: 89 SGGGPRRPFPAPSPAHAGELPRG 111
S G R +G P+G
Sbjct: 914 SQGAGSRGLSEEKTLRSGGGPQG 936
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 33.5 bits (75), Expect = 0.037
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 11 DNQGSFPGGQREAAREEAQRDGSTQG--DPTQGGRIRVSTSGGPFKGGSLKEGCTQGTST 68
D G PG A ++ G+ G P R R T G P K S ++ ++T
Sbjct: 163 DTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEG-PRKSVS---SASEHSTT 218
Query: 69 RAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPRG 111
P + P GG +Q +S P SPA +G RG
Sbjct: 219 EPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARG 261
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 33.5 bits (75), Expect = 0.037
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 11 DNQGSFPGGQREAAREEAQRDGSTQG--DPTQGGRIRVSTSGGPFKGGSLKEGCTQGTST 68
D G PG A ++ G+ G P R R T G P K S ++ ++T
Sbjct: 163 DTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEG-PRKSVS---SASEHSTT 218
Query: 69 RAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPRG 111
P + P GG +Q +S P SPA +G RG
Sbjct: 219 EPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARG 261
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 33.5 bits (75), Expect = 0.037
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 11 DNQGSFPGGQREAAREEAQRDGSTQG--DPTQGGRIRVSTSGGPFKGGSLKEGCTQGTST 68
D G PG A ++ G+ G P R R T G P K S ++ ++T
Sbjct: 154 DTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEG-PRKSVS---SASEHSTT 209
Query: 69 RAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPRG 111
P + P GG +Q +S P SPA +G RG
Sbjct: 210 EPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARG 252
>gi|239752280 PREDICTED: similar to family with sequence similarity
48, member B2 [Homo sapiens]
Length = 779
Score = 32.7 bits (73), Expect = 0.063
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 17 PGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCT---------QGTS 67
PG + +A R +Q S Q G++ S+SG P L T Q +
Sbjct: 357 PGSETDAGRAVSQAQESVQSKVKGPGKMSHSSSG-PASVSQLSSWKTPEQPDPVWVQSSV 415
Query: 68 TRAG----------PCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELP 109
+ G P + G G S + +G +RPFPA +PA A P
Sbjct: 416 SGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLKRPFPAAAPAVAAAAP 467
>gi|210032463 family with sequence similarity 48, member B2 [Homo
sapiens]
Length = 817
Score = 32.7 bits (73), Expect = 0.063
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 17 PGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCT---------QGTS 67
PG + +A R +Q S Q G++ S+SG P L T Q +
Sbjct: 395 PGSETDAGRAVSQAQESVQSKVKGPGKMSHSSSG-PASVSQLSSWKTPEQPDPVWVQSSV 453
Query: 68 TRAG----------PCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELP 109
+ G P + G G S + +G +RPFPA +PA A P
Sbjct: 454 SGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLKRPFPAAAPAVAAAAP 505
>gi|169160624 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 32.3 bits (72), Expect = 0.082
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 30 RDGSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESS 89
R S + P G + + S G GG+ G G G +GG+V +
Sbjct: 118 RRASPRHAPAAAGGVSMGPSPGGKDGGAFIWG---GARAGGGEALTRKRARGGAVPGDRP 174
Query: 90 GGGPRRPFPAPSPAHAGELPRG 111
GGG P PAP A + PRG
Sbjct: 175 GGGAASPLPAPLLA-SRPRPRG 195
>gi|7661936 scaffold attachment factor B2 [Homo sapiens]
Length = 953
Score = 32.3 bits (72), Expect = 0.082
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 13 QGSFPGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPF-KGGSLKEGCTQGTSTRAG 71
QG+ G A+RE A+ G +G G +++ GG +GG + G +QG G
Sbjct: 863 QGAMDAGA--ASREHARWQGGERGLSGPSGPGHMASRGGVAGRGGFAQGGHSQGHVVPGG 920
Query: 72 PCTQGVPMQGGSVQDESSGGGPRRPFPAPSP 102
++GG V + G P P P P
Sbjct: 921 G------LEGGGVASQDRGSRVPHPHPHPPP 945
>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
precursor [Homo sapiens]
Length = 616
Score = 32.0 bits (71), Expect = 0.11
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 2 RAPPSQETADNQGSFPGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKEG 61
R P S GS PGGQ A+ ST Q V G + +
Sbjct: 500 RLPSSARAGAGSGSSPGGQSPASGNVTGNSNSTFISSGQ-----VMNFKGDIIVVYVSQT 554
Query: 62 CTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSP 102
+G + A P + V + + +D +G GPR P P P
Sbjct: 555 SQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGP 595
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 32.0 bits (71), Expect = 0.11
Identities = 33/117 (28%), Positives = 45/117 (38%), Gaps = 9/117 (7%)
Query: 5 PSQETADNQGSFPGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCTQ 64
PS + QG P G + + G QG P QGG + GP G + Q
Sbjct: 29 PSLIAGNPQGPSPQGGNKP-QGPPPPPGKPQGPPPQGG----NKPQGPPPPGKPQGPPPQ 83
Query: 65 GTSTRAGPCT----QGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPRGYAQLRS 117
G +R+ QG P QGG Q GG + P P G +G ++ +S
Sbjct: 84 GDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQS 140
Score = 30.0 bits (66), Expect = 0.41
Identities = 30/113 (26%), Positives = 37/113 (32%), Gaps = 12/113 (10%)
Query: 2 RAPPSQ-ETADNQGSFPGGQREAAREEAQRD---GSTQGDPTQGGRIRVSTSGGPFKGGS 57
R+PP + + QG P G + Q G QG P QGG S P
Sbjct: 91 RSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPP----- 145
Query: 58 LKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELPR 110
G QG + G QG P G + +P P P G R
Sbjct: 146 ---GKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSR 195
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 32.0 bits (71), Expect = 0.11
Identities = 28/110 (25%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 2 RAPPSQETADNQGSFPGGQREAAREEAQRDGSTQGDPTQGGRIR--VSTSGGPFKGGSLK 59
R PP ++ P G+ E R Q +QG P G+ G +
Sbjct: 122 RPPPQGGNQSHRPPPPPGKPE--RPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSP 179
Query: 60 EGCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAGELP 109
G QG + G QG P G +GG P++P P+ G P
Sbjct: 180 PGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPPP 229
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 15/74 (20%)
Query: 51 GPFKGGSLKEGCTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRR------------PFP 98
G + G+ +E +A PC+ G M+ + D+ GG P P P
Sbjct: 555 GSGEPGATRESPKANGQNQASPCSSGDDME---ISDDDRGGSPPPAPTPPQQPPPPPPPP 611
Query: 99 APSPAHAGELPRGY 112
P P + LP GY
Sbjct: 612 PPPPPYLASLPLGY 625
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 63 TQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPS 101
+QG+ST A P TQ P GG GGG P PAP+
Sbjct: 1172 SQGSSTEAEPPTQPEPTGGG-------GGGGSSPSPAPA 1203
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 33 STQGDPTQGGRIRVSTSGGPFKGGS 57
ST P+ GR+ S GGPF GS
Sbjct: 934 STPPVPSSSGRLTPSPRGGPFNPGS 958
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 31.2 bits (69), Expect = 0.18
Identities = 28/103 (27%), Positives = 33/103 (32%), Gaps = 13/103 (12%)
Query: 4 PPSQETADNQGSFPGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCT 63
PP FPG A+ EA G+ + QG R T G P G+
Sbjct: 355 PPGPVGPAGGPGFPGAP--GAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGA------ 406
Query: 64 QGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAG 106
P T G+P GS G P P P P G
Sbjct: 407 -----SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG 444
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 31.2 bits (69), Expect = 0.18
Identities = 28/103 (27%), Positives = 33/103 (32%), Gaps = 13/103 (12%)
Query: 4 PPSQETADNQGSFPGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFKGGSLKEGCT 63
PP FPG A+ EA G+ + QG R T G P G+
Sbjct: 286 PPGPVGPAGGPGFPGAP--GAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGA------ 337
Query: 64 QGTSTRAGPCTQGVPMQGGSVQDESSGGGPRRPFPAPSPAHAG 106
P T G+P GS G P P P P G
Sbjct: 338 -----SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG 375
>gi|4506501 regulatory factor X-associated protein [Homo sapiens]
Length = 272
Score = 31.2 bits (69), Expect = 0.18
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 17 PGGQREAAREEAQRDGSTQ--GDPTQGGRIRVSTSGGPFKGGSLKEGCTQGTS 67
PGG AA E D T G+ + GG R + GG EGC++ TS
Sbjct: 99 PGGGESAASLEDLEDEETHSGGEGSSGGARRRGSGGGSMSKTCTYEGCSETTS 151
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.130 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,292,355
Number of Sequences: 37866
Number of extensions: 376207
Number of successful extensions: 1830
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 1601
Number of HSP's gapped (non-prelim): 398
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.