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Search of human proteins with 113206030
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113206030 mucin 1 isoform 8 precursor [Homo sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113206030 mucin 1 isoform 8 precursor [Homo sapiens] 338 1e-93
gi|113206024 mucin 1 isoform 5 precursor [Homo sapiens] 181 2e-46
gi|65301117 mucin 1 isoform 1 precursor [Homo sapiens] 106 9e-24
gi|67189069 mucin 1 isoform 3 precursor [Homo sapiens] 105 2e-23
gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens] 105 2e-23
gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens] 98 3e-21
gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens] 98 3e-21
gi|186700625 Rab-like GTP-binding protein 1 isoform 2 [Homo sapi... 35 0.020
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] 33 0.10
gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens] 33 0.10
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 33 0.10
gi|130980072 CD33 antigen isoform 2 precursor [Homo sapiens] 32 0.29
gi|130979981 CD33 antigen isoform 1 precursor [Homo sapiens] 32 0.29
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 30 0.86
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 30 1.1
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 30 1.1
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 30 1.1
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 30 1.1
gi|239757944 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|38788260 bromodomain PHD finger transcription factor isoform ... 30 1.1
gi|38788274 bromodomain PHD finger transcription factor isoform ... 30 1.1
gi|154426272 hypothetical protein LOC54540 [Homo sapiens] 29 1.5
gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens] 29 1.9
gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens] 29 1.9
gi|122891874 keratin associated protein 5-5 [Homo sapiens] 29 1.9
gi|161019170 mucin 5AC [Homo sapiens] 28 2.5
gi|108773804 Fraser syndrome 1 [Homo sapiens] 28 2.5
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 28 2.5
gi|145309328 papilin [Homo sapiens] 28 2.5
gi|51972220 keratin associated protein 5-2 [Homo sapiens] 28 2.5
>gi|113206030 mucin 1 isoform 8 precursor [Homo sapiens]
Length = 158
Score = 338 bits (867), Expect = 1e-93
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
Query: 61 KSCRETFLKCFCRFINKGVFWASPILSSVWGWGARLGHRAAGAGLCSGCAGHCLSHCLGC 120
KSCRETFLKCFCRFINKGVFWASPILSSVWGWGARLGHRAAGAGLCSGCAGHCLSHCLGC
Sbjct: 61 KSCRETFLKCFCRFINKGVFWASPILSSVWGWGARLGHRAAGAGLCSGCAGHCLSHCLGC 120
Query: 121 LSVPPKELRAAGHLSSPGYLPSYERVPHLPHPWALCAP 158
LSVPPKELRAAGHLSSPGYLPSYERVPHLPHPWALCAP
Sbjct: 121 LSVPPKELRAAGHLSSPGYLPSYERVPHLPHPWALCAP 158
>gi|113206024 mucin 1 isoform 5 precursor [Homo sapiens]
Length = 203
Score = 181 bits (459), Expect = 2e-46
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
Query: 61 KSCRETFLKCFCRFINKGVFWASPILSSV 89
KSCRETFLKCFCRFINKGVFWASPILSSV
Sbjct: 61 KSCRETFLKCFCRFINKGVFWASPILSSV 89
>gi|65301117 mucin 1 isoform 1 precursor [Homo sapiens]
Length = 273
Score = 106 bits (264), Expect = 9e-24
Identities = 53/54 (98%), Positives = 54/54 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAI 54
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA+
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAL 54
>gi|67189069 mucin 1 isoform 3 precursor [Homo sapiens]
Length = 255
Score = 105 bits (262), Expect = 2e-23
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA 53
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA 53
>gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens]
Length = 150
Score = 105 bits (262), Expect = 2e-23
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA 53
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA 53
>gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens]
Length = 264
Score = 97.8 bits (242), Expect = 3e-21
Identities = 53/62 (85%), Positives = 53/62 (85%), Gaps = 9/62 (14%)
Query: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
Query: 52 NA 53
NA
Sbjct: 61 NA 62
>gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens]
Length = 159
Score = 97.8 bits (242), Expect = 3e-21
Identities = 53/62 (85%), Positives = 53/62 (85%), Gaps = 9/62 (14%)
Query: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
Query: 52 NA 53
NA
Sbjct: 61 NA 62
>gi|186700625 Rab-like GTP-binding protein 1 isoform 2 [Homo
sapiens]
Length = 520
Score = 35.4 bits (80), Expect = 0.020
Identities = 41/150 (27%), Positives = 54/150 (36%), Gaps = 31/150 (20%)
Query: 2 TPGTQSPFFLLLLLTVLTVVTGSGHASST-PGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
+PG+QSP ++ V TGS + P + +A SSVP A+P P
Sbjct: 294 SPGSQSP-----VVPAGAVSTGSSSPGTPQPAPQLPLNAAPPSSVPPVPPSEALPPPACP 348
Query: 61 KSCRETFLKCFCRFINKGVFWASPILSSVWGWGAR--LGHRAAGAGLCSGCAGHCLSHCL 118
+ + + P WGW R LG R G A HCL L
Sbjct: 349 SAPAP----------RRSIISRPP----PWGWRLRGALGRRGQWPPWGGGRACHCLGRHL 394
Query: 119 GCL---------SVPPKELRAAGHLSSPGY 139
+V EL AGH SPG+
Sbjct: 395 PLYHRLCRCPVAAVCASELEEAGHWWSPGW 424
>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
Length = 587
Score = 33.1 bits (74), Expect = 0.10
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
ASST G E S T SS P STE A+P TTT E
Sbjct: 452 ASSTTLGRSEESTTVHSS-PGSTETTALPGSTTTAGLSE 489
Score = 27.3 bits (59), Expect = 5.6
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T S P ST A P TTT
Sbjct: 142 ASTTSSGVSEESTTSHSR-PGSTHTTAFPDSTTT 174
Score = 26.6 bits (57), Expect = 9.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
T T +++TPG + ++ + S P ST+ +PA TTT
Sbjct: 163 THTTAFPDSTTTPGLSRHSTTSHSS--PGSTDTTLLPASTTT 202
>gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens]
Length = 456
Score = 33.1 bits (74), Expect = 0.10
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
ASST G E S T SS P STE A+P TTT E
Sbjct: 346 ASSTTLGRSEESTTVHSS-PGSTETTALPGSTTTAGLSE 383
Score = 27.3 bits (59), Expect = 5.6
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T S P ST A P TTT
Sbjct: 36 ASTTSSGVSEESTTSHSR-PGSTHTTAFPDSTTT 68
Score = 26.6 bits (57), Expect = 9.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
T T +++TPG + ++ + S P ST+ +PA TTT
Sbjct: 57 THTTAFPDSTTTPGLSRHSTTSHSS--PGSTDTTLLPASTTT 96
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 33.1 bits (74), Expect = 0.10
Identities = 19/39 (48%), Positives = 20/39 (51%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
AS+T G E S T SS P STE P TTT RE
Sbjct: 3929 ASTTTPGLSEESTTVYSSSPGSTETTVFPRSTTTSVRRE 3967
Score = 31.2 bits (69), Expect = 0.38
Identities = 17/34 (50%), Positives = 18/34 (52%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T SS P STE P TTT
Sbjct: 2846 ASTTTPGLSEESTTVYSSSPGSTETTVFPRSTTT 2879
Score = 30.0 bits (66), Expect = 0.86
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGE--KETSATQRSSVPSSTEKNAIPAPT 58
+ P + LL T + TGS H + +P G ++ +T S PSS K+ +PAP
Sbjct: 1789 LLPDNTTASGLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWPSS--KDTMPAPP 1846
Query: 59 TTKS 62
TT S
Sbjct: 1847 TTTS 1850
Score = 29.3 bits (64), Expect = 1.5
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T RS P ST A P TTT
Sbjct: 983 ASTTSSGVSEESTTSRSR-PGSTHTTAFPDSTTT 1015
Score = 28.1 bits (61), Expect = 3.3
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGE--KETSATQRSSVPSSTEKNAIPAPT 58
+ P + LL T + TGS H + +P G ++ +T S P+S K+ PAP
Sbjct: 3346 LLPDNTTASGLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWPNS--KDTTPAPP 3403
Query: 59 TTKS 62
TT S
Sbjct: 3404 TTTS 3407
Score = 28.1 bits (61), Expect = 3.3
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGE--KETSATQRSSVPSSTEKNAIPAPT 58
+ P + LL T + TGS H + +P G ++ +T S P+S K+ PAP
Sbjct: 4429 LLPDNTTASGLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWPNS--KDTTPAPP 4486
Query: 59 TTKS 62
TT S
Sbjct: 4487 TTTS 4490
Score = 27.7 bits (60), Expect = 4.3
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
AS T G E S T RS P ST PA TTT E
Sbjct: 1261 ASMTSLGVGEESTTSRSQ-PGSTHSTVSPASTTTPGLSE 1298
Score = 27.7 bits (60), Expect = 4.3
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
AS T G E S T RS P ST PA TTT E
Sbjct: 2344 ASMTSLGVGEESTTSRSQ-PGSTHSTVSPASTTTPGLSE 2381
Score = 27.7 bits (60), Expect = 4.3
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
AS T G E S T RS P ST PA TTT E
Sbjct: 2818 ASMTSLGVGEESTTSRSQ-PGSTHSTVSPASTTTPGLSE 2855
Score = 27.7 bits (60), Expect = 4.3
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
AS T G E S T RS P ST PA TTT E
Sbjct: 3901 ASMTSLGVGEESTTSRSQ-PGSTHSTVSPASTTTPGLSE 3938
Score = 27.3 bits (59), Expect = 5.6
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T SS STE P TTT
Sbjct: 1289 ASTTTPGLSEESTTVYSSSRGSTETTVFPHSTTT 1322
Score = 27.3 bits (59), Expect = 5.6
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T S P ST A P TTT
Sbjct: 2066 ASTTSSGVSEESTTSHSR-PGSTHTTAFPDSTTT 2098
Score = 27.3 bits (59), Expect = 5.6
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T S P ST A P TTT
Sbjct: 3623 ASTTSSGVSEESTTSHSR-PGSTHTTAFPDSTTT 3655
Score = 26.6 bits (57), Expect = 9.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
T T +++TPG + ++ + S P ST+ +PA TTT
Sbjct: 1004 THTTAFPDSTTTPGLSRHSTTSHSS--PGSTDTTLLPASTTT 1043
Score = 26.6 bits (57), Expect = 9.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 24 SGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
S H++++ GE TS P STE +P TTT E
Sbjct: 1205 SAHSTTSGRGESTTSRIS----PGSTEITTLPGSTTTPGLSE 1242
Score = 26.6 bits (57), Expect = 9.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
T T +++TPG + ++ + S P ST+ +PA TTT
Sbjct: 2087 THTTAFPDSTTTPGLSRHSTTSHSS--PGSTDTTLLPASTTT 2126
Score = 26.6 bits (57), Expect = 9.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 24 SGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
S H++++ GE TS P STE +P TTT E
Sbjct: 2288 SAHSTTSGRGESTTSRIS----PGSTEITTLPGSTTTPGLSE 2325
Score = 26.6 bits (57), Expect = 9.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
T T +++TPG + ++ + S P ST+ +PA TTT
Sbjct: 2561 THTTAFPDSTTTPGLSRHSTTSHSS--PGSTDTTLLPASTTT 2600
Score = 26.6 bits (57), Expect = 9.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 24 SGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
S H++++ GE TS P STE +P TTT E
Sbjct: 2762 SAHSTTSGRGESTTSRIS----PGSTEITTLPGSTTTPGLSE 2799
Score = 26.6 bits (57), Expect = 9.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
T T +++TPG + ++ + S P ST+ +PA TTT
Sbjct: 3644 THTTAFPDSTTTPGLSRHSTTSHSS--PGSTDTTLLPASTTT 3683
Score = 26.6 bits (57), Expect = 9.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 24 SGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
S H++++ GE TS P STE +P TTT E
Sbjct: 3845 SAHSTTSGRGESTTSRIS----PGSTEITTLPGSTTTPGLSE 3882
>gi|130980072 CD33 antigen isoform 2 precursor [Homo sapiens]
Length = 237
Score = 31.6 bits (70), Expect = 0.29
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 4 GTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSC 63
G + L L L V T A+ T G +T T S+ P +K+ + PT T SC
Sbjct: 139 GVTALLALCLCLIFFIVKTHRRKAARTAVGRNDTHPTTGSASPKHQKKSKLHGPTETSSC 198
>gi|130979981 CD33 antigen isoform 1 precursor [Homo sapiens]
Length = 364
Score = 31.6 bits (70), Expect = 0.29
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 4 GTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSC 63
G + L L L V T A+ T G +T T S+ P +K+ + PT T SC
Sbjct: 266 GVTALLALCLCLIFFIVKTHRRKAARTAVGRNDTHPTTGSASPKHQKKSKLHGPTETSSC 325
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 30.0 bits (66), Expect = 0.86
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGE--KETSATQRSSVPSSTEKNAIPAPT 58
+ P + LL T + TGS H + +P G ++ +T S PSS K+ +PAP
Sbjct: 1276 LLPDNTTASGLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWPSS--KDTMPAPP 1333
Query: 59 TTKS 62
TT S
Sbjct: 1334 TTTS 1337
Score = 29.3 bits (64), Expect = 1.5
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T RS P ST A P TTT
Sbjct: 470 ASTTSSGVSEESTTSRSR-PGSTHTTAFPDSTTT 502
Score = 27.7 bits (60), Expect = 4.3
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
AS T G E S T RS P ST PA TTT E
Sbjct: 748 ASMTSLGVGEESTTSRSQ-PGSTHSTVSPASTTTPGLSE 785
Score = 27.3 bits (59), Expect = 5.6
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T SS STE P TTT
Sbjct: 776 ASTTTPGLSEESTTVYSSSRGSTETTVFPHSTTT 809
Score = 26.6 bits (57), Expect = 9.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
T T +++TPG + ++ + S P ST+ +PA TTT
Sbjct: 491 THTTAFPDSTTTPGLSRHSTTSHSS--PGSTDTTLLPASTTT 530
Score = 26.6 bits (57), Expect = 9.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 24 SGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
S H++++ GE TS P STE +P TTT E
Sbjct: 692 SAHSTTSGRGESTTSRIS----PGSTEITTLPGSTTTPGLSE 729
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 29.6 bits (65), Expect = 1.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 30 TPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRET 66
+P KE + T S P++T++ PAPTTTKS T
Sbjct: 381 SPTTPKEPAPTTTKSAPTTTKE---PAPTTTKSAPTT 414
Score = 28.9 bits (63), Expect = 1.9
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRET 66
T T AS+TP KE + T S P++ ++ PAPTTTKS T
Sbjct: 217 TPTTPKEPASTTP---KEPTPTTIKSAPTTPKE---PAPTTTKSAPTT 258
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 29.6 bits (65), Expect = 1.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 30 TPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRET 66
+P KE + T S P++T++ PAPTTTKS T
Sbjct: 422 SPTTPKEPAPTTTKSAPTTTKE---PAPTTTKSAPTT 455
Score = 28.9 bits (63), Expect = 1.9
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRET 66
T T AS+TP KE + T S P++ ++ PAPTTTKS T
Sbjct: 258 TPTTPKEPASTTP---KEPTPTTIKSAPTTPKE---PAPTTTKSAPTT 299
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 29.6 bits (65), Expect = 1.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 30 TPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRET 66
+P KE + T S P++T++ PAPTTTKS T
Sbjct: 474 SPTTPKEPAPTTTKSAPTTTKE---PAPTTTKSAPTT 507
Score = 28.9 bits (63), Expect = 1.9
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRET 66
T T AS+TP KE + T S P++ ++ PAPTTTKS T
Sbjct: 310 TPTTPKEPASTTP---KEPTPTTIKSAPTTPKE---PAPTTTKSAPTT 351
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 29.6 bits (65), Expect = 1.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 30 TPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRET 66
+P KE + T S P++T++ PAPTTTKS T
Sbjct: 515 SPTTPKEPAPTTTKSAPTTTKE---PAPTTTKSAPTT 548
Score = 28.9 bits (63), Expect = 1.9
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRET 66
T T AS+TP KE + T S P++ ++ PAPTTTKS T
Sbjct: 351 TPTTPKEPASTTP---KEPTPTTIKSAPTTPKE---PAPTTTKSAPTT 392
>gi|239757944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 1.1
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 73 RFINKGVFWASPILSSVW-GWGARLGHRAAGAGLCSGCAGHCLSHCLGCLSVPPKELRAA 131
++ ++GV WA+ + SV G+ GH A G H L++ +G P R
Sbjct: 490 KWCSRGVSWAAWHIRSVQLPQGSGDGHEMAAGG-------HSLAYLVGHRRGPSSSWRCQ 542
Query: 132 GHLS-SPGYLPSYERVPHLPHP 152
H+S SP P VP HP
Sbjct: 543 EHVSQSPSLPPHNAIVPSPTHP 564
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 29.6 bits (65), Expect = 1.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 17 VLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIP 55
V T V+ SSTPG + TSAT S++ SS + P
Sbjct: 2228 VSTAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQPPRP 2266
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 29.6 bits (65), Expect = 1.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 17 VLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIP 55
V T V+ SSTPG + TSAT S++ SS + P
Sbjct: 2102 VSTAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQPPRP 2140
>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
Length = 789
Score = 29.3 bits (64), Expect = 1.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 103 AGLCSGCAGHCLSHCLGCLSVPPKELRAAGHLSSPG 138
+G C+GHC HC G L PP PG
Sbjct: 214 SGCSHPCSGHCGGHCSGPLLPPPSSQPLPSTHRDPG 249
>gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens]
Length = 814
Score = 28.9 bits (63), Expect = 1.9
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 86 LSSVWGWGARLGHRAAGAGLCSGCAGHC-----LSHCLGC 120
L W GAR A A +C A HC L HC GC
Sbjct: 99 LGRAWPEGARWEPDACTACVCQDGAAHCGPQAHLPHCRGC 138
>gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens]
Length = 1503
Score = 28.9 bits (63), Expect = 1.9
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 86 LSSVWGWGARLGHRAAGAGLCSGCAGHC-----LSHCLGC 120
L W GAR A A +C A HC L HC GC
Sbjct: 99 LGRAWPEGARWEPDACTACVCQDGAAHCGPQAHLPHCRGC 138
>gi|122891874 keratin associated protein 5-5 [Homo sapiens]
Length = 237
Score = 28.9 bits (63), Expect = 1.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 91 GWGARLGHRAAGAGLCSGCAGHCLSHCLGC 120
G G+ G R +G G C G C S C GC
Sbjct: 9 GCGSGCGGRGSGCGGCGSGCGGCGSGCGGC 38
Score = 26.6 bits (57), Expect = 9.5
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 87 SSVWGWGARLGHRAAGAGLCSGCAGHCLSHCLGC 120
S G G+ G +G G C GC C + C GC
Sbjct: 26 SGCGGCGSGCGGCGSGCGGCGGCGSGC-AGCGGC 58
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 28.5 bits (62), Expect = 2.5
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 2 TPGTQSPFFLLLLLTVLTVVTGS-GHASSTPGGEKET-----SATQRSSVPSSTEKNAIP 55
TP T +L T TGS SSTPG T + T ++ PSS+ A+
Sbjct: 5028 TPETVHTSTVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTTTGFTATPSSSPGTALT 5087
Query: 56 APTTT 60
PTTT
Sbjct: 5088 PPTTT 5092
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 28.5 bits (62), Expect = 2.5
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 106 CSGCAGHCLSHCLGCLSVPPKELRAAGH 133
C+ C+G SHC C PPK LR GH
Sbjct: 612 CASCSGPTPSHCTAC--SPPKALR-QGH 636
Score = 26.6 bits (57), Expect = 9.5
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 106 CSGCAGHCLSHCLGCLSVPPKELRAAGHLSSPG 138
C+GC G HCL C P LR G SS G
Sbjct: 517 CAGCWGPTEKHCLACRD-PLHVLRDGGCESSCG 548
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 28.5 bits (62), Expect = 2.5
Identities = 20/67 (29%), Positives = 25/67 (37%)
Query: 91 GWGARLGHRAAGAGLCSGCAGHCLSHCLGCLSVPPKELRAAGHLSSPGYLPSYERVPHLP 150
G G G G G G G LG + P + + GHLS P + LP
Sbjct: 156 GGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLP 215
Query: 151 HPWALCA 157
HP + A
Sbjct: 216 HPGLVAA 222
>gi|145309328 papilin [Homo sapiens]
Length = 1251
Score = 28.5 bits (62), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 90 WGWGARLGHRAAGAGLCSGCAG---HCLSHCLGCLSVPPKELRAA 131
W WG LG RA G G +G H S+ + V P ++AA
Sbjct: 851 WPWGQELGSRAPGLGGDAGSPAPPFHSSSYRISLAGVEPSLVQAA 895
>gi|51972220 keratin associated protein 5-2 [Homo sapiens]
Length = 177
Score = 28.5 bits (62), Expect = 2.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 87 SSVWGWGARLGHRAAGAGLCSGCAGHCLSHCLGC 120
SS G G+ G +G G C G C S C GC
Sbjct: 19 SSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGC 52
Score = 26.9 bits (58), Expect = 7.3
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 87 SSVWGWGARLGHRAAGAGLCSGCAGHCLSHCLGCLS 122
S G G+ G +G G C G C S C GC S
Sbjct: 12 SGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSS 47
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,822,953
Number of Sequences: 37866
Number of extensions: 374294
Number of successful extensions: 1820
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1637
Number of HSP's gapped (non-prelim): 218
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.