Guide to the Human Genome
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Name: LOC100292149 Sequence: fasta or formatted (600aa) NCBI GI: 239757944
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         83           4
 C cysteine            3.3         20           3
 D aspartate           2.7         16           1
 E glutamate           5.5         33           2
 F phenylalanine       0.8          5           1
 G glycine            14.8         89           2
 H histidine           6.8         41           2
 I isoleucine          1.7         10           1
 K lysine              1.3          8           1
 L leucine             9.7         58           3
 M methionine          0.8          5           2
 N asparagine          0.8          5           1
 P proline             7.3         44           2
 Q glutamine           7.8         47           4
 R arginine            4.7         28           2
 S serine              5.7         34           3
 T threonine           1.5          9           1
 V valine              7.3         44           4
 W tryptophan          2.7         16           3
 Y tyrosine            0.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290187          0.019   PREDICTED: hypothetical protein XP_002348281 
GATA6                 0.014   GATA binding protein 6 
HRNR                  0.014   hornerin 
LOC100290946          0.013   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.013   PREDICTED: hypothetical protein XP_002344246 
CACNA1H               0.012   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1H               0.012   calcium channel, voltage-dependent, T type, alpha 1H...
LOC728767             0.010   PREDICTED: hypothetical protein 
LOC728767             0.010   PREDICTED: hypothetical protein 
TLX1                  0.009   T-cell leukemia homeobox 1 
LOC100293513          0.008   PREDICTED: hypothetical protein 
FLJ10357              0.008   hypothetical protein LOC55701 
COL4A3                0.008   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.008   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.008   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.008   alpha 3 type IV collagen isoform 1 precursor 
COL2A1                0.007   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.007   collagen, type II, alpha 1 isoform 2 precursor [Hom...
ELN                   0.007   elastin isoform e precursor 
ELN                   0.007   elastin isoform d precursor 
ELN                   0.007   elastin isoform c precursor 
ELN                   0.007   elastin isoform b precursor 
ELN                   0.007   elastin isoform a precursor 
LOC100130465          0.007   PREDICTED: hypothetical protein 
LOC729983             0.007   PREDICTED: hypothetical protein 
LOC100130465          0.007   PREDICTED: hypothetical protein 
LOC729983             0.007   PREDICTED: hypothetical protein 
LOC100130465          0.007   PREDICTED: hypothetical protein 
COL9A3                0.007   alpha 3 type IX collagen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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